Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17325 and ABZR87_RS17330 overlap by 4 nucleotides ABZR87_RS17330 and ABZR87_RS17335 are separated by 32 nucleotides ABZR87_RS17335 and ABZR87_RS17340 are separated by 79 nucleotides ABZR87_RS17340 and ABZR87_RS17345 are separated by 106 nucleotides
ABZR87_RS17325: ABZR87_RS17325 - GNAT family N-acetyltransferase, at 243,334 to 243,783
_RS17325
ABZR87_RS17330: ABZR87_RS17330 - NAD(P)H-dependent oxidoreductase, at 243,780 to 244,406
_RS17330
ABZR87_RS17335: ABZR87_RS17335 - pyroglutamyl-peptidase I, at 244,439 to 245,086
_RS17335
ABZR87_RS17340: ABZR87_RS17340 - MarR family transcriptional regulator, at 245,166 to 245,585
_RS17340
ABZR87_RS17345: ABZR87_RS17345 - hypothetical protein, at 245,692 to 247,281
_RS17345
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.547 kb on + strand, within ABZR87_RS17325 at 243.562 kb on + strand, within ABZR87_RS17325 at 243.562 kb on + strand, within ABZR87_RS17325 at 243.562 kb on + strand, within ABZR87_RS17325 at 243.563 kb on - strand, within ABZR87_RS17325 at 243.563 kb on - strand, within ABZR87_RS17325 at 243.712 kb on + strand, within ABZR87_RS17325 at 243.712 kb on + strand, within ABZR87_RS17325 at 243.712 kb on + strand, within ABZR87_RS17325 at 243.712 kb on + strand, within ABZR87_RS17325 at 243.713 kb on - strand, within ABZR87_RS17325 at 244.058 kb on + strand, within ABZR87_RS17330 at 244.058 kb on + strand, within ABZR87_RS17330 at 244.058 kb on + strand, within ABZR87_RS17330 at 244.059 kb on - strand, within ABZR87_RS17330 at 244.059 kb on - strand, within ABZR87_RS17330 at 244.074 kb on + strand, within ABZR87_RS17330 at 244.075 kb on - strand, within ABZR87_RS17330 at 244.075 kb on - strand, within ABZR87_RS17330 at 244.075 kb on - strand, within ABZR87_RS17330 at 244.075 kb on - strand, within ABZR87_RS17330 at 244.075 kb on - strand, within ABZR87_RS17330 at 244.075 kb on - strand, within ABZR87_RS17330 at 244.075 kb on - strand, within ABZR87_RS17330 at 244.251 kb on + strand, within ABZR87_RS17330 at 244.252 kb on - strand, within ABZR87_RS17330 at 244.252 kb on - strand, within ABZR87_RS17330 at 244.260 kb on + strand, within ABZR87_RS17330 at 244.260 kb on + strand, within ABZR87_RS17330 at 244.261 kb on - strand, within ABZR87_RS17330 at 244.261 kb on - strand, within ABZR87_RS17330 at 244.492 kb on + strand at 244.492 kb on + strand at 244.493 kb on - strand at 244.493 kb on - strand at 244.645 kb on - strand, within ABZR87_RS17335 at 244.666 kb on - strand, within ABZR87_RS17335 at 244.666 kb on - strand, within ABZR87_RS17335 at 244.752 kb on + strand, within ABZR87_RS17335 at 244.752 kb on + strand, within ABZR87_RS17335 at 244.783 kb on + strand, within ABZR87_RS17335 at 244.858 kb on + strand, within ABZR87_RS17335 at 244.859 kb on - strand, within ABZR87_RS17335 at 244.859 kb on - strand, within ABZR87_RS17335 at 245.080 kb on + strand at 245.080 kb on + strand at 245.081 kb on - strand at 245.167 kb on + strand at 245.167 kb on + strand at 245.167 kb on + strand at 245.167 kb on + strand at 245.168 kb on - strand at 245.211 kb on - strand, within ABZR87_RS17340 at 245.211 kb on - strand, within ABZR87_RS17340 at 245.513 kb on - strand, within ABZR87_RS17340 at 245.566 kb on + strand at 245.567 kb on - strand at 245.597 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.693 kb on + strand at 245.723 kb on + strand at 245.723 kb on + strand at 245.723 kb on + strand at 245.861 kb on + strand, within ABZR87_RS17345
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 243,547 + ABZR87_RS17325 0.47 +0.5 243,562 + ABZR87_RS17325 0.51 -0.3 243,562 + ABZR87_RS17325 0.51 -0.3 243,562 + ABZR87_RS17325 0.51 -0.8 243,563 - ABZR87_RS17325 0.51 +0.5 243,563 - ABZR87_RS17325 0.51 +0.4 243,712 + ABZR87_RS17325 0.84 -1.5 243,712 + ABZR87_RS17325 0.84 -0.1 243,712 + ABZR87_RS17325 0.84 -0.2 243,712 + ABZR87_RS17325 0.84 -0.0 243,713 - ABZR87_RS17325 0.84 -1.0 244,058 + ABZR87_RS17330 0.44 -0.5 244,058 + ABZR87_RS17330 0.44 +0.8 244,058 + ABZR87_RS17330 0.44 -1.4 244,059 - ABZR87_RS17330 0.44 +0.6 244,059 - ABZR87_RS17330 0.44 +0.3 244,074 + ABZR87_RS17330 0.47 +0.4 244,075 - ABZR87_RS17330 0.47 -0.7 244,075 - ABZR87_RS17330 0.47 +1.1 244,075 - ABZR87_RS17330 0.47 -0.2 244,075 - ABZR87_RS17330 0.47 -2.1 244,075 - ABZR87_RS17330 0.47 -0.9 244,075 - ABZR87_RS17330 0.47 +2.0 244,075 - ABZR87_RS17330 0.47 +0.3 244,251 + ABZR87_RS17330 0.75 +0.8 244,252 - ABZR87_RS17330 0.75 -0.7 244,252 - ABZR87_RS17330 0.75 +0.6 244,260 + ABZR87_RS17330 0.77 +0.1 244,260 + ABZR87_RS17330 0.77 +0.9 244,261 - ABZR87_RS17330 0.77 +1.7 244,261 - ABZR87_RS17330 0.77 +0.7 244,492 + +0.1 244,492 + -0.2 244,493 - +0.7 244,493 - -0.0 244,645 - ABZR87_RS17335 0.32 -0.8 244,666 - ABZR87_RS17335 0.35 -0.2 244,666 - ABZR87_RS17335 0.35 -0.1 244,752 + ABZR87_RS17335 0.48 -2.3 244,752 + ABZR87_RS17335 0.48 -1.0 244,783 + ABZR87_RS17335 0.53 -0.6 244,858 + ABZR87_RS17335 0.65 -1.6 244,859 - ABZR87_RS17335 0.65 -0.6 244,859 - ABZR87_RS17335 0.65 -1.1 245,080 + -0.2 245,080 + -0.7 245,081 - -2.5 245,167 + -0.0 245,167 + +0.2 245,167 + -0.4 245,167 + +1.9 245,168 - +0.5 245,211 - ABZR87_RS17340 0.11 +0.4 245,211 - ABZR87_RS17340 0.11 +0.2 245,513 - ABZR87_RS17340 0.83 +1.4 245,566 + -0.9 245,567 - -0.9 245,597 + +0.1 245,693 + +0.0 245,693 + -0.6 245,693 + +0.0 245,693 + -0.5 245,693 + +0.3 245,693 + +0.7 245,693 + -0.5 245,723 + +0.3 245,723 + +0.2 245,723 + +0.1 245,861 + ABZR87_RS17345 0.11 +0.3
Or see this region's nucleotide sequence