Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17095 and ABZR87_RS17100 are separated by 47 nucleotides ABZR87_RS17100 and ABZR87_RS17105 are separated by 37 nucleotides ABZR87_RS17105 and ABZR87_RS17110 are separated by 521 nucleotides
ABZR87_RS17095: ABZR87_RS17095 - copper oxidase, at 182,137 to 183,435
_RS17095
ABZR87_RS17100: ABZR87_RS17100 - cupredoxin family protein, at 183,483 to 183,971
_RS17100
ABZR87_RS17105: ABZR87_RS17105 - copper-binding protein, at 184,009 to 184,329
_RS17105
ABZR87_RS17110: ABZR87_RS17110 - glycosyltransferase family 90 protein, at 184,851 to 185,711
_RS17110
Position (kb) 183
184 Strain fitness (log2 ratio) -2
-1
0
1
2 at 182.605 kb on + strand, within ABZR87_RS17095 at 182.605 kb on + strand, within ABZR87_RS17095 at 182.605 kb on + strand, within ABZR87_RS17095 at 182.605 kb on + strand, within ABZR87_RS17095 at 182.606 kb on - strand, within ABZR87_RS17095 at 182.641 kb on + strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.642 kb on - strand, within ABZR87_RS17095 at 182.765 kb on - strand, within ABZR87_RS17095 at 182.765 kb on - strand, within ABZR87_RS17095 at 182.785 kb on + strand, within ABZR87_RS17095 at 182.786 kb on - strand, within ABZR87_RS17095 at 182.786 kb on - strand, within ABZR87_RS17095 at 182.786 kb on - strand, within ABZR87_RS17095 at 182.946 kb on + strand, within ABZR87_RS17095 at 182.946 kb on + strand, within ABZR87_RS17095 at 182.946 kb on + strand, within ABZR87_RS17095 at 182.946 kb on + strand, within ABZR87_RS17095 at 183.193 kb on + strand, within ABZR87_RS17095 at 183.193 kb on + strand, within ABZR87_RS17095 at 183.193 kb on + strand, within ABZR87_RS17095 at 183.193 kb on + strand, within ABZR87_RS17095 at 183.193 kb on + strand, within ABZR87_RS17095 at 183.194 kb on - strand, within ABZR87_RS17095 at 183.194 kb on - strand, within ABZR87_RS17095 at 183.194 kb on - strand, within ABZR87_RS17095 at 183.194 kb on - strand, within ABZR87_RS17095 at 183.194 kb on - strand, within ABZR87_RS17095 at 183.359 kb on - strand at 183.359 kb on - strand at 183.359 kb on - strand at 183.359 kb on - strand at 183.359 kb on - strand at 183.376 kb on + strand at 183.376 kb on + strand at 183.377 kb on - strand at 183.377 kb on - strand at 183.403 kb on + strand at 183.409 kb on + strand at 183.410 kb on - strand at 183.410 kb on - strand at 183.410 kb on - strand at 183.410 kb on - strand at 183.410 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.468 kb on - strand at 183.468 kb on - strand at 183.468 kb on - strand at 183.468 kb on - strand at 183.665 kb on + strand, within ABZR87_RS17100 at 183.665 kb on + strand, within ABZR87_RS17100 at 183.666 kb on - strand, within ABZR87_RS17100 at 183.733 kb on + strand, within ABZR87_RS17100 at 183.838 kb on + strand, within ABZR87_RS17100 at 183.839 kb on - strand, within ABZR87_RS17100 at 183.839 kb on - strand, within ABZR87_RS17100 at 184.029 kb on - strand at 184.250 kb on + strand, within ABZR87_RS17105 at 184.250 kb on + strand, within ABZR87_RS17105 at 184.251 kb on - strand, within ABZR87_RS17105 at 184.251 kb on - strand, within ABZR87_RS17105 at 184.275 kb on + strand, within ABZR87_RS17105 at 184.276 kb on - strand, within ABZR87_RS17105 at 184.276 kb on - strand, within ABZR87_RS17105 at 184.308 kb on - strand at 184.327 kb on + strand at 184.327 kb on + strand at 184.328 kb on - strand at 184.328 kb on - strand at 184.367 kb on - strand at 184.367 kb on - strand at 184.456 kb on + strand at 184.456 kb on + strand at 184.457 kb on - strand at 184.457 kb on - strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.507 kb on + strand at 184.508 kb on - strand at 184.508 kb on - strand at 184.512 kb on + strand at 184.513 kb on - strand at 184.628 kb on + strand at 184.628 kb on + strand at 184.629 kb on - strand at 184.629 kb on - strand at 184.636 kb on - strand at 184.680 kb on - strand at 184.720 kb on - strand at 184.758 kb on + strand at 184.832 kb on + strand at 184.879 kb on - strand at 184.882 kb on - strand at 184.882 kb on - strand at 184.882 kb on - strand at 184.955 kb on + strand, within ABZR87_RS17110 at 184.956 kb on - strand, within ABZR87_RS17110
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 182,605 + ABZR87_RS17095 0.36 -0.1 182,605 + ABZR87_RS17095 0.36 +0.5 182,605 + ABZR87_RS17095 0.36 +0.5 182,605 + ABZR87_RS17095 0.36 -0.6 182,606 - ABZR87_RS17095 0.36 +0.5 182,641 + ABZR87_RS17095 0.39 -0.2 182,642 - ABZR87_RS17095 0.39 +0.5 182,642 - ABZR87_RS17095 0.39 +0.1 182,642 - ABZR87_RS17095 0.39 +1.1 182,642 - ABZR87_RS17095 0.39 +0.5 182,642 - ABZR87_RS17095 0.39 +0.8 182,642 - ABZR87_RS17095 0.39 +0.4 182,765 - ABZR87_RS17095 0.48 +0.2 182,765 - ABZR87_RS17095 0.48 -0.6 182,785 + ABZR87_RS17095 0.50 +0.5 182,786 - ABZR87_RS17095 0.50 +0.1 182,786 - ABZR87_RS17095 0.50 -0.9 182,786 - ABZR87_RS17095 0.50 +0.3 182,946 + ABZR87_RS17095 0.62 -0.1 182,946 + ABZR87_RS17095 0.62 +1.1 182,946 + ABZR87_RS17095 0.62 -0.7 182,946 + ABZR87_RS17095 0.62 -0.6 183,193 + ABZR87_RS17095 0.81 -1.8 183,193 + ABZR87_RS17095 0.81 -1.3 183,193 + ABZR87_RS17095 0.81 -0.3 183,193 + ABZR87_RS17095 0.81 -0.2 183,193 + ABZR87_RS17095 0.81 +0.3 183,194 - ABZR87_RS17095 0.81 -1.0 183,194 - ABZR87_RS17095 0.81 +2.2 183,194 - ABZR87_RS17095 0.81 -1.3 183,194 - ABZR87_RS17095 0.81 -0.9 183,194 - ABZR87_RS17095 0.81 -1.5 183,359 - -0.2 183,359 - +0.5 183,359 - +1.3 183,359 - +1.2 183,359 - +0.2 183,376 + -0.4 183,376 + +0.8 183,377 - +0.7 183,377 - +0.2 183,403 + -0.7 183,409 + +0.4 183,410 - +0.0 183,410 - -0.0 183,410 - -0.1 183,410 - -0.4 183,410 - -0.2 183,459 - +0.1 183,459 - +0.3 183,468 - -0.3 183,468 - -2.5 183,468 - -0.5 183,468 - -0.4 183,665 + ABZR87_RS17100 0.37 -0.8 183,665 + ABZR87_RS17100 0.37 -1.0 183,666 - ABZR87_RS17100 0.37 -0.8 183,733 + ABZR87_RS17100 0.51 -0.5 183,838 + ABZR87_RS17100 0.73 +0.2 183,839 - ABZR87_RS17100 0.73 -0.8 183,839 - ABZR87_RS17100 0.73 -0.1 184,029 - +0.8 184,250 + ABZR87_RS17105 0.75 -0.1 184,250 + ABZR87_RS17105 0.75 +0.0 184,251 - ABZR87_RS17105 0.75 -0.2 184,251 - ABZR87_RS17105 0.75 -0.1 184,275 + ABZR87_RS17105 0.83 -0.0 184,276 - ABZR87_RS17105 0.83 +0.7 184,276 - ABZR87_RS17105 0.83 -0.9 184,308 - +0.6 184,327 + +0.1 184,327 + +0.0 184,328 - +0.2 184,328 - -0.6 184,367 - -0.5 184,367 - -0.3 184,456 + +0.0 184,456 + -0.1 184,457 - +0.1 184,457 - -0.6 184,507 + -1.0 184,507 + -0.7 184,507 + +0.4 184,507 + +0.4 184,507 + -0.0 184,507 + -1.6 184,507 + -0.2 184,507 + -1.0 184,508 - -1.0 184,508 - -0.4 184,512 + +1.0 184,513 - +0.1 184,628 + +1.0 184,628 + +0.1 184,629 - -0.5 184,629 - -0.2 184,636 - -0.4 184,680 - +0.3 184,720 - -0.6 184,758 + +0.3 184,832 + -0.5 184,879 - +0.6 184,882 - -0.4 184,882 - -0.9 184,882 - -0.1 184,955 + ABZR87_RS17110 0.12 -0.2 184,956 - ABZR87_RS17110 0.12 +0.3
Or see this region's nucleotide sequence