Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17090

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17080 and ABZR87_RS17085 are separated by 96 nucleotidesABZR87_RS17085 and ABZR87_RS17090 are separated by 9 nucleotidesABZR87_RS17090 and ABZR87_RS17095 are separated by 2 nucleotides ABZR87_RS17080: ABZR87_RS17080 - DUF2946 family protein, at 179,867 to 180,262 _RS17080 ABZR87_RS17085: ABZR87_RS17085 - hypothetical protein, at 180,359 to 180,715 _RS17085 ABZR87_RS17090: ABZR87_RS17090 - TolC family protein, at 180,725 to 182,134 _RS17090 ABZR87_RS17095: ABZR87_RS17095 - copper oxidase, at 182,137 to 183,435 _RS17095 Position (kb) 180 181 182 183Strain fitness (log2 ratio) -2 -1 0 1 2at 179.819 kb on - strandat 179.823 kb on + strandat 179.823 kb on + strandat 179.823 kb on + strandat 179.824 kb on - strandat 180.008 kb on - strand, within ABZR87_RS17080at 180.015 kb on + strand, within ABZR87_RS17080at 180.280 kb on + strandat 180.280 kb on + strandat 180.280 kb on + strandat 180.280 kb on + strandat 180.281 kb on - strandat 180.281 kb on - strandat 180.330 kb on + strandat 180.330 kb on + strandat 180.331 kb on - strandat 180.331 kb on - strandat 180.382 kb on - strandat 180.417 kb on + strand, within ABZR87_RS17085at 180.536 kb on + strand, within ABZR87_RS17085at 180.537 kb on - strand, within ABZR87_RS17085at 180.537 kb on - strand, within ABZR87_RS17085at 180.546 kb on - strand, within ABZR87_RS17085at 180.820 kb on + strandat 180.821 kb on - strandat 180.966 kb on + strand, within ABZR87_RS17090at 180.995 kb on + strand, within ABZR87_RS17090at 180.995 kb on + strand, within ABZR87_RS17090at 180.995 kb on + strand, within ABZR87_RS17090at 181.170 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.243 kb on + strand, within ABZR87_RS17090at 181.244 kb on - strand, within ABZR87_RS17090at 181.244 kb on - strand, within ABZR87_RS17090at 181.244 kb on - strand, within ABZR87_RS17090at 181.275 kb on - strand, within ABZR87_RS17090at 181.275 kb on - strand, within ABZR87_RS17090at 181.383 kb on - strand, within ABZR87_RS17090at 181.512 kb on + strand, within ABZR87_RS17090at 181.513 kb on - strand, within ABZR87_RS17090at 181.513 kb on - strand, within ABZR87_RS17090at 181.550 kb on + strand, within ABZR87_RS17090at 181.550 kb on + strand, within ABZR87_RS17090at 181.550 kb on + strand, within ABZR87_RS17090at 181.551 kb on - strand, within ABZR87_RS17090at 181.664 kb on + strand, within ABZR87_RS17090at 181.665 kb on - strand, within ABZR87_RS17090at 181.665 kb on - strand, within ABZR87_RS17090at 181.775 kb on + strand, within ABZR87_RS17090at 181.776 kb on - strand, within ABZR87_RS17090at 181.776 kb on - strand, within ABZR87_RS17090at 181.776 kb on - strand, within ABZR87_RS17090at 181.841 kb on + strand, within ABZR87_RS17090at 181.842 kb on - strand, within ABZR87_RS17090at 181.842 kb on - strand, within ABZR87_RS17090at 181.842 kb on - strand, within ABZR87_RS17090at 181.850 kb on + strand, within ABZR87_RS17090at 181.862 kb on + strand, within ABZR87_RS17090at 181.862 kb on + strand, within ABZR87_RS17090at 181.862 kb on + strand, within ABZR87_RS17090at 181.862 kb on + strand, within ABZR87_RS17090at 181.862 kb on + strand, within ABZR87_RS17090at 181.863 kb on - strand, within ABZR87_RS17090at 181.863 kb on - strand, within ABZR87_RS17090at 181.929 kb on + strand, within ABZR87_RS17090at 181.930 kb on - strand, within ABZR87_RS17090at 181.930 kb on - strand, within ABZR87_RS17090at 181.930 kb on - strand, within ABZR87_RS17090at 181.930 kb on - strand, within ABZR87_RS17090at 181.937 kb on + strand, within ABZR87_RS17090at 181.937 kb on + strand, within ABZR87_RS17090at 181.938 kb on - strand, within ABZR87_RS17090at 181.938 kb on - strand, within ABZR87_RS17090at 182.010 kb on - strandat 182.290 kb on + strand, within ABZR87_RS17095at 182.291 kb on - strand, within ABZR87_RS17095at 182.422 kb on + strand, within ABZR87_RS17095at 182.422 kb on + strand, within ABZR87_RS17095at 182.423 kb on - strand, within ABZR87_RS17095at 182.605 kb on + strand, within ABZR87_RS17095at 182.605 kb on + strand, within ABZR87_RS17095at 182.605 kb on + strand, within ABZR87_RS17095at 182.605 kb on + strand, within ABZR87_RS17095at 182.606 kb on - strand, within ABZR87_RS17095at 182.641 kb on + strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.765 kb on - strand, within ABZR87_RS17095at 182.765 kb on - strand, within ABZR87_RS17095at 182.785 kb on + strand, within ABZR87_RS17095at 182.786 kb on - strand, within ABZR87_RS17095at 182.786 kb on - strand, within ABZR87_RS17095at 182.786 kb on - strand, within ABZR87_RS17095at 182.946 kb on + strand, within ABZR87_RS17095at 182.946 kb on + strand, within ABZR87_RS17095at 182.946 kb on + strand, within ABZR87_RS17095at 182.946 kb on + strand, within ABZR87_RS17095

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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179,819 - +0.7
179,823 + -0.8
179,823 + -0.3
179,823 + -0.1
179,824 - +0.8
180,008 - ABZR87_RS17080 0.36 -0.0
180,015 + ABZR87_RS17080 0.37 +0.9
180,280 + +0.3
180,280 + -1.0
180,280 + +1.3
180,280 + -0.0
180,281 - +0.1
180,281 - -0.0
180,330 + +0.0
180,330 + -0.8
180,331 - +1.1
180,331 - -0.8
180,382 - +0.7
180,417 + ABZR87_RS17085 0.16 -1.0
180,536 + ABZR87_RS17085 0.50 -0.5
180,537 - ABZR87_RS17085 0.50 -0.9
180,537 - ABZR87_RS17085 0.50 +0.2
180,546 - ABZR87_RS17085 0.52 +0.0
180,820 + +0.4
180,821 - -1.5
180,966 + ABZR87_RS17090 0.17 +0.2
180,995 + ABZR87_RS17090 0.19 +0.4
180,995 + ABZR87_RS17090 0.19 -1.0
180,995 + ABZR87_RS17090 0.19 -0.1
181,170 - ABZR87_RS17090 0.32 +0.2
181,239 - ABZR87_RS17090 0.36 +0.0
181,239 - ABZR87_RS17090 0.36 +0.8
181,239 - ABZR87_RS17090 0.36 -0.5
181,239 - ABZR87_RS17090 0.36 +0.1
181,243 + ABZR87_RS17090 0.37 +1.0
181,244 - ABZR87_RS17090 0.37 -2.0
181,244 - ABZR87_RS17090 0.37 -0.3
181,244 - ABZR87_RS17090 0.37 -0.3
181,275 - ABZR87_RS17090 0.39 -0.1
181,275 - ABZR87_RS17090 0.39 +0.7
181,383 - ABZR87_RS17090 0.47 +0.1
181,512 + ABZR87_RS17090 0.56 +0.0
181,513 - ABZR87_RS17090 0.56 +0.9
181,513 - ABZR87_RS17090 0.56 -0.3
181,550 + ABZR87_RS17090 0.59 +0.6
181,550 + ABZR87_RS17090 0.59 +0.2
181,550 + ABZR87_RS17090 0.59 -0.2
181,551 - ABZR87_RS17090 0.59 -0.3
181,664 + ABZR87_RS17090 0.67 -0.3
181,665 - ABZR87_RS17090 0.67 -0.2
181,665 - ABZR87_RS17090 0.67 -0.5
181,775 + ABZR87_RS17090 0.74 -1.4
181,776 - ABZR87_RS17090 0.75 -0.3
181,776 - ABZR87_RS17090 0.75 +0.3
181,776 - ABZR87_RS17090 0.75 +0.3
181,841 + ABZR87_RS17090 0.79 -0.3
181,842 - ABZR87_RS17090 0.79 +0.6
181,842 - ABZR87_RS17090 0.79 -0.4
181,842 - ABZR87_RS17090 0.79 +0.5
181,850 + ABZR87_RS17090 0.80 -0.1
181,862 + ABZR87_RS17090 0.81 -0.4
181,862 + ABZR87_RS17090 0.81 -0.5
181,862 + ABZR87_RS17090 0.81 +0.6
181,862 + ABZR87_RS17090 0.81 +2.3
181,862 + ABZR87_RS17090 0.81 -0.0
181,863 - ABZR87_RS17090 0.81 -0.4
181,863 - ABZR87_RS17090 0.81 -0.1
181,929 + ABZR87_RS17090 0.85 +0.4
181,930 - ABZR87_RS17090 0.85 +0.8
181,930 - ABZR87_RS17090 0.85 +0.0
181,930 - ABZR87_RS17090 0.85 +0.7
181,930 - ABZR87_RS17090 0.85 +0.3
181,937 + ABZR87_RS17090 0.86 +1.5
181,937 + ABZR87_RS17090 0.86 +0.4
181,938 - ABZR87_RS17090 0.86 +0.2
181,938 - ABZR87_RS17090 0.86 +0.0
182,010 - +0.3
182,290 + ABZR87_RS17095 0.12 +1.1
182,291 - ABZR87_RS17095 0.12 -1.0
182,422 + ABZR87_RS17095 0.22 -0.2
182,422 + ABZR87_RS17095 0.22 +0.5
182,423 - ABZR87_RS17095 0.22 -0.5
182,605 + ABZR87_RS17095 0.36 -0.1
182,605 + ABZR87_RS17095 0.36 +0.5
182,605 + ABZR87_RS17095 0.36 +0.5
182,605 + ABZR87_RS17095 0.36 -0.6
182,606 - ABZR87_RS17095 0.36 +0.5
182,641 + ABZR87_RS17095 0.39 -0.2
182,642 - ABZR87_RS17095 0.39 +0.5
182,642 - ABZR87_RS17095 0.39 +0.1
182,642 - ABZR87_RS17095 0.39 +1.1
182,642 - ABZR87_RS17095 0.39 +0.5
182,642 - ABZR87_RS17095 0.39 +0.8
182,642 - ABZR87_RS17095 0.39 +0.4
182,765 - ABZR87_RS17095 0.48 +0.2
182,765 - ABZR87_RS17095 0.48 -0.6
182,785 + ABZR87_RS17095 0.50 +0.5
182,786 - ABZR87_RS17095 0.50 +0.1
182,786 - ABZR87_RS17095 0.50 -0.9
182,786 - ABZR87_RS17095 0.50 +0.3
182,946 + ABZR87_RS17095 0.62 -0.1
182,946 + ABZR87_RS17095 0.62 +1.1
182,946 + ABZR87_RS17095 0.62 -0.7
182,946 + ABZR87_RS17095 0.62 -0.6

Or see this region's nucleotide sequence