Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17075 and ABZR87_RS17080 are separated by 172 nucleotides ABZR87_RS17080 and ABZR87_RS17085 are separated by 96 nucleotides ABZR87_RS17085 and ABZR87_RS17090 are separated by 9 nucleotides
ABZR87_RS17075: ABZR87_RS17075 - acyl-CoA thioesterase, at 179,191 to 179,694
_RS17075
ABZR87_RS17080: ABZR87_RS17080 - DUF2946 family protein, at 179,867 to 180,262
_RS17080
ABZR87_RS17085: ABZR87_RS17085 - hypothetical protein, at 180,359 to 180,715
_RS17085
ABZR87_RS17090: ABZR87_RS17090 - TolC family protein, at 180,725 to 182,134
_RS17090
Position (kb) 180
181 Strain fitness (log2 ratio) -2
-1
0
1 at 179.375 kb on + strand, within ABZR87_RS17075 at 179.376 kb on - strand, within ABZR87_RS17075 at 179.376 kb on - strand, within ABZR87_RS17075 at 179.376 kb on - strand, within ABZR87_RS17075 at 179.388 kb on + strand, within ABZR87_RS17075 at 179.388 kb on + strand, within ABZR87_RS17075 at 179.388 kb on + strand, within ABZR87_RS17075 at 179.462 kb on + strand, within ABZR87_RS17075 at 179.462 kb on + strand, within ABZR87_RS17075 at 179.462 kb on + strand, within ABZR87_RS17075 at 179.463 kb on - strand, within ABZR87_RS17075 at 179.463 kb on - strand, within ABZR87_RS17075 at 179.463 kb on - strand, within ABZR87_RS17075 at 179.550 kb on - strand, within ABZR87_RS17075 at 179.550 kb on - strand, within ABZR87_RS17075 at 179.579 kb on + strand, within ABZR87_RS17075 at 179.579 kb on + strand, within ABZR87_RS17075 at 179.580 kb on - strand, within ABZR87_RS17075 at 179.580 kb on - strand, within ABZR87_RS17075 at 179.580 kb on - strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.688 kb on + strand at 179.689 kb on - strand at 179.689 kb on - strand at 179.689 kb on - strand at 179.819 kb on - strand at 179.823 kb on + strand at 179.823 kb on + strand at 179.823 kb on + strand at 179.824 kb on - strand at 180.008 kb on - strand, within ABZR87_RS17080 at 180.015 kb on + strand, within ABZR87_RS17080 at 180.280 kb on + strand at 180.280 kb on + strand at 180.280 kb on + strand at 180.280 kb on + strand at 180.281 kb on - strand at 180.281 kb on - strand at 180.330 kb on + strand at 180.330 kb on + strand at 180.331 kb on - strand at 180.331 kb on - strand at 180.382 kb on - strand at 180.417 kb on + strand, within ABZR87_RS17085 at 180.536 kb on + strand, within ABZR87_RS17085 at 180.537 kb on - strand, within ABZR87_RS17085 at 180.537 kb on - strand, within ABZR87_RS17085 at 180.546 kb on - strand, within ABZR87_RS17085 at 180.820 kb on + strand at 180.821 kb on - strand at 180.966 kb on + strand, within ABZR87_RS17090 at 180.995 kb on + strand, within ABZR87_RS17090 at 180.995 kb on + strand, within ABZR87_RS17090 at 180.995 kb on + strand, within ABZR87_RS17090 at 181.170 kb on - strand, within ABZR87_RS17090 at 181.239 kb on - strand, within ABZR87_RS17090 at 181.239 kb on - strand, within ABZR87_RS17090 at 181.239 kb on - strand, within ABZR87_RS17090 at 181.239 kb on - strand, within ABZR87_RS17090 at 181.243 kb on + strand, within ABZR87_RS17090 at 181.244 kb on - strand, within ABZR87_RS17090 at 181.244 kb on - strand, within ABZR87_RS17090 at 181.244 kb on - strand, within ABZR87_RS17090 at 181.275 kb on - strand, within ABZR87_RS17090 at 181.275 kb on - strand, within ABZR87_RS17090 at 181.383 kb on - strand, within ABZR87_RS17090 at 181.512 kb on + strand, within ABZR87_RS17090 at 181.513 kb on - strand, within ABZR87_RS17090 at 181.513 kb on - strand, within ABZR87_RS17090 at 181.550 kb on + strand, within ABZR87_RS17090 at 181.550 kb on + strand, within ABZR87_RS17090 at 181.550 kb on + strand, within ABZR87_RS17090 at 181.551 kb on - strand, within ABZR87_RS17090 at 181.664 kb on + strand, within ABZR87_RS17090 at 181.665 kb on - strand, within ABZR87_RS17090 at 181.665 kb on - strand, within ABZR87_RS17090
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 179,375 + ABZR87_RS17075 0.37 -0.2 179,376 - ABZR87_RS17075 0.37 -1.2 179,376 - ABZR87_RS17075 0.37 +0.8 179,376 - ABZR87_RS17075 0.37 +0.4 179,388 + ABZR87_RS17075 0.39 -0.1 179,388 + ABZR87_RS17075 0.39 -0.0 179,388 + ABZR87_RS17075 0.39 -0.6 179,462 + ABZR87_RS17075 0.54 -0.4 179,462 + ABZR87_RS17075 0.54 +0.1 179,462 + ABZR87_RS17075 0.54 -0.3 179,463 - ABZR87_RS17075 0.54 -0.8 179,463 - ABZR87_RS17075 0.54 -0.6 179,463 - ABZR87_RS17075 0.54 +0.1 179,550 - ABZR87_RS17075 0.71 -0.7 179,550 - ABZR87_RS17075 0.71 -0.9 179,579 + ABZR87_RS17075 0.77 +0.2 179,579 + ABZR87_RS17075 0.77 +0.3 179,580 - ABZR87_RS17075 0.77 +0.2 179,580 - ABZR87_RS17075 0.77 -0.4 179,580 - ABZR87_RS17075 0.77 -0.2 179,620 + ABZR87_RS17075 0.85 +0.3 179,620 + ABZR87_RS17075 0.85 -0.3 179,620 + ABZR87_RS17075 0.85 +0.7 179,620 + ABZR87_RS17075 0.85 -0.2 179,688 + +0.7 179,689 - -0.2 179,689 - +0.4 179,689 - -0.3 179,819 - +0.7 179,823 + -0.8 179,823 + -0.3 179,823 + -0.1 179,824 - +0.8 180,008 - ABZR87_RS17080 0.36 -0.0 180,015 + ABZR87_RS17080 0.37 +0.9 180,280 + +0.3 180,280 + -1.0 180,280 + +1.3 180,280 + -0.0 180,281 - +0.1 180,281 - -0.0 180,330 + +0.0 180,330 + -0.8 180,331 - +1.1 180,331 - -0.8 180,382 - +0.7 180,417 + ABZR87_RS17085 0.16 -1.0 180,536 + ABZR87_RS17085 0.50 -0.5 180,537 - ABZR87_RS17085 0.50 -0.9 180,537 - ABZR87_RS17085 0.50 +0.2 180,546 - ABZR87_RS17085 0.52 +0.0 180,820 + +0.4 180,821 - -1.5 180,966 + ABZR87_RS17090 0.17 +0.2 180,995 + ABZR87_RS17090 0.19 +0.4 180,995 + ABZR87_RS17090 0.19 -1.0 180,995 + ABZR87_RS17090 0.19 -0.1 181,170 - ABZR87_RS17090 0.32 +0.2 181,239 - ABZR87_RS17090 0.36 +0.0 181,239 - ABZR87_RS17090 0.36 +0.8 181,239 - ABZR87_RS17090 0.36 -0.5 181,239 - ABZR87_RS17090 0.36 +0.1 181,243 + ABZR87_RS17090 0.37 +1.0 181,244 - ABZR87_RS17090 0.37 -2.0 181,244 - ABZR87_RS17090 0.37 -0.3 181,244 - ABZR87_RS17090 0.37 -0.3 181,275 - ABZR87_RS17090 0.39 -0.1 181,275 - ABZR87_RS17090 0.39 +0.7 181,383 - ABZR87_RS17090 0.47 +0.1 181,512 + ABZR87_RS17090 0.56 +0.0 181,513 - ABZR87_RS17090 0.56 +0.9 181,513 - ABZR87_RS17090 0.56 -0.3 181,550 + ABZR87_RS17090 0.59 +0.6 181,550 + ABZR87_RS17090 0.59 +0.2 181,550 + ABZR87_RS17090 0.59 -0.2 181,551 - ABZR87_RS17090 0.59 -0.3 181,664 + ABZR87_RS17090 0.67 -0.3 181,665 - ABZR87_RS17090 0.67 -0.2 181,665 - ABZR87_RS17090 0.67 -0.5
Or see this region's nucleotide sequence