Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16265 and ABZR87_RS16270 are separated by 78 nucleotides ABZR87_RS16270 and ABZR87_RS16275 are separated by 415 nucleotides
ABZR87_RS16265: ABZR87_RS16265 - replication protein RepA, at 1 to 1,077
_RS16265
ABZR87_RS16270: ABZR87_RS16270 - cold-shock protein, at 1,156 to 1,359
_RS16270
ABZR87_RS16275: ABZR87_RS16275 - ParA family protein, at 1,775 to 2,443
_RS16275
Position (kb)
1
2 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1.157 kb on + strand at 1.158 kb on - strand at 1.158 kb on - strand at 1.333 kb on - strand, within ABZR87_RS16270 at 1.348 kb on - strand at 1.445 kb on + strand at 1.445 kb on + strand at 1.470 kb on + strand at 1.471 kb on - strand at 1.471 kb on - strand at 1.471 kb on - strand at 1.534 kb on - strand at 1.534 kb on - strand at 1.548 kb on + strand at 1.549 kb on - strand at 1.556 kb on + strand at 1.556 kb on + strand at 1.556 kb on + strand at 1.556 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.568 kb on - strand at 1.568 kb on - strand at 1.568 kb on - strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.593 kb on + strand at 1.593 kb on + strand at 1.594 kb on - strand at 1.594 kb on - strand at 1.594 kb on - strand at 1.613 kb on + strand at 1.614 kb on - strand at 1.687 kb on - strand at 1.687 kb on - strand at 1.700 kb on + strand at 1.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 1,157 + -0.0 1,158 - -0.2 1,158 - -0.3 1,333 - ABZR87_RS16270 0.87 -0.8 1,348 - +0.1 1,445 + -0.1 1,445 + -2.9 1,470 + +0.3 1,471 - +0.5 1,471 - +0.3 1,471 - -0.2 1,534 - -0.2 1,534 - +0.4 1,548 + -0.1 1,549 - -0.4 1,556 + -0.2 1,556 + -0.0 1,556 + -0.1 1,556 + +0.2 1,567 + -2.0 1,567 + +0.6 1,567 + -0.4 1,567 + -0.0 1,567 + -0.3 1,568 - +1.4 1,568 - -0.2 1,568 - +0.3 1,589 + +0.3 1,589 + -0.3 1,589 + -0.2 1,589 + -0.7 1,589 + -0.3 1,590 - +0.1 1,590 - +0.4 1,590 - +0.2 1,590 - -2.8 1,590 - -0.3 1,590 - -1.3 1,590 - -0.5 1,590 - -0.2 1,590 - -0.5 1,590 - +0.7 1,593 + -1.2 1,593 + -0.3 1,594 - -0.4 1,594 - -0.6 1,594 - +0.5 1,613 + -0.9 1,614 - +0.0 1,687 - -0.8 1,687 - -0.1 1,700 + -0.1 1,701 - +0.5
Or see this region's nucleotide sequence