Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15440 and ABZR87_RS15445 are separated by 22 nucleotides ABZR87_RS15445 and ABZR87_RS15450 are separated by 146 nucleotides
ABZR87_RS15440: ABZR87_RS15440 - ribonuclease G, at 3,248,347 to 3,249,816
_RS15440
ABZR87_RS15445: ABZR87_RS15445 - MFS transporter, at 3,249,839 to 3,251,230
_RS15445
ABZR87_RS15450: ABZR87_RS15450 - 2-dehydropantoate 2-reductase, at 3,251,377 to 3,252,318
_RS15450
Position (kb)
3249
3250
3251
3252 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3248.906 kb on - strand, within ABZR87_RS15440 at 3248.972 kb on - strand, within ABZR87_RS15440 at 3249.121 kb on + strand, within ABZR87_RS15440 at 3249.121 kb on + strand, within ABZR87_RS15440 at 3249.121 kb on + strand, within ABZR87_RS15440 at 3249.151 kb on + strand, within ABZR87_RS15440 at 3249.152 kb on - strand, within ABZR87_RS15440 at 3249.214 kb on + strand, within ABZR87_RS15440 at 3249.272 kb on - strand, within ABZR87_RS15440 at 3249.796 kb on + strand at 3249.815 kb on - strand at 3249.815 kb on - strand at 3249.947 kb on + strand at 3249.948 kb on - strand at 3249.948 kb on - strand at 3250.104 kb on + strand, within ABZR87_RS15445 at 3250.104 kb on + strand, within ABZR87_RS15445 at 3250.104 kb on + strand, within ABZR87_RS15445 at 3250.104 kb on + strand, within ABZR87_RS15445 at 3250.105 kb on - strand, within ABZR87_RS15445 at 3250.119 kb on + strand, within ABZR87_RS15445 at 3250.120 kb on - strand, within ABZR87_RS15445 at 3250.120 kb on - strand, within ABZR87_RS15445 at 3250.120 kb on - strand, within ABZR87_RS15445 at 3250.120 kb on - strand, within ABZR87_RS15445 at 3250.327 kb on - strand, within ABZR87_RS15445 at 3250.355 kb on + strand, within ABZR87_RS15445 at 3250.355 kb on + strand, within ABZR87_RS15445 at 3250.355 kb on + strand, within ABZR87_RS15445 at 3250.407 kb on + strand, within ABZR87_RS15445 at 3250.408 kb on - strand, within ABZR87_RS15445 at 3250.408 kb on - strand, within ABZR87_RS15445 at 3250.704 kb on + strand, within ABZR87_RS15445 at 3250.705 kb on - strand, within ABZR87_RS15445 at 3251.410 kb on + strand at 3251.411 kb on - strand at 3251.425 kb on + strand at 3251.425 kb on + strand at 3251.619 kb on + strand, within ABZR87_RS15450 at 3251.620 kb on - strand, within ABZR87_RS15450 at 3251.690 kb on - strand, within ABZR87_RS15450
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 3,248,906 - ABZR87_RS15440 0.38 -1.7 3,248,972 - ABZR87_RS15440 0.43 +0.0 3,249,121 + ABZR87_RS15440 0.53 -1.7 3,249,121 + ABZR87_RS15440 0.53 +3.0 3,249,121 + ABZR87_RS15440 0.53 -0.4 3,249,151 + ABZR87_RS15440 0.55 -0.7 3,249,152 - ABZR87_RS15440 0.55 +0.0 3,249,214 + ABZR87_RS15440 0.59 -0.7 3,249,272 - ABZR87_RS15440 0.63 -1.2 3,249,796 + +0.1 3,249,815 - +0.3 3,249,815 - -0.1 3,249,947 + -0.2 3,249,948 - -1.6 3,249,948 - +0.0 3,250,104 + ABZR87_RS15445 0.19 -1.7 3,250,104 + ABZR87_RS15445 0.19 -0.2 3,250,104 + ABZR87_RS15445 0.19 -0.7 3,250,104 + ABZR87_RS15445 0.19 -0.8 3,250,105 - ABZR87_RS15445 0.19 +0.1 3,250,119 + ABZR87_RS15445 0.20 +0.3 3,250,120 - ABZR87_RS15445 0.20 -0.3 3,250,120 - ABZR87_RS15445 0.20 -1.1 3,250,120 - ABZR87_RS15445 0.20 -0.2 3,250,120 - ABZR87_RS15445 0.20 -0.7 3,250,327 - ABZR87_RS15445 0.35 -0.1 3,250,355 + ABZR87_RS15445 0.37 -0.6 3,250,355 + ABZR87_RS15445 0.37 +0.1 3,250,355 + ABZR87_RS15445 0.37 -0.1 3,250,407 + ABZR87_RS15445 0.41 +0.1 3,250,408 - ABZR87_RS15445 0.41 -0.1 3,250,408 - ABZR87_RS15445 0.41 -0.6 3,250,704 + ABZR87_RS15445 0.62 -1.6 3,250,705 - ABZR87_RS15445 0.62 -0.1 3,251,410 + +1.1 3,251,411 - +0.6 3,251,425 + -0.3 3,251,425 + +0.4 3,251,619 + ABZR87_RS15450 0.26 +0.2 3,251,620 - ABZR87_RS15450 0.26 +0.1 3,251,690 - ABZR87_RS15450 0.33 +0.1
Or see this region's nucleotide sequence