Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14875 and ABZR87_RS14880 are separated by 6 nucleotides ABZR87_RS14880 and ABZR87_RS14885 are separated by 163 nucleotides ABZR87_RS14885 and ABZR87_RS14890 are separated by 180 nucleotides ABZR87_RS14890 and ABZR87_RS14895 are separated by 61 nucleotides ABZR87_RS14895 and ABZR87_RS14900 are separated by 79 nucleotides
ABZR87_RS14875: ABZR87_RS14875 - NADH-quinone oxidoreductase subunit B family protein, at 3,139,861 to 3,140,343
_RS14875
ABZR87_RS14880: ABZR87_RS14880 - NADH-quinone oxidoreductase subunit A, at 3,140,350 to 3,140,709
_RS14880
ABZR87_RS14885: ABZR87_RS14885 - tRNA-Leu, at 3,140,873 to 3,140,957
_RS14885
ABZR87_RS14890: ABZR87_RS14890 - preprotein translocase subunit SecG, at 3,141,138 to 3,141,500
_RS14890
ABZR87_RS14895: ABZR87_RS14895 - triose-phosphate isomerase, at 3,141,562 to 3,142,308
_RS14895
ABZR87_RS14900: ABZR87_RS14900 - NAD(P)H-quinone oxidoreductase, at 3,142,388 to 3,143,392
_RS14900
Position (kb)
3141
3142 Strain fitness (log2 ratio)
-1
0
1 at 3140.974 kb on - strand at 3140.996 kb on - strand at 3140.996 kb on - strand at 3141.129 kb on + strand at 3141.130 kb on - strand at 3141.219 kb on - strand, within ABZR87_RS14890 at 3141.519 kb on - strand at 3141.519 kb on - strand at 3141.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 3,140,974 - -0.1 3,140,996 - -0.9 3,140,996 - +1.3 3,141,129 + -0.0 3,141,130 - +0.4 3,141,219 - ABZR87_RS14890 0.22 -0.5 3,141,519 - +0.6 3,141,519 - -0.6 3,141,564 - +0.4
Or see this region's nucleotide sequence