Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11640 and ABZR87_RS11645 are separated by 173 nucleotides ABZR87_RS11645 and ABZR87_RS11650 overlap by 4 nucleotides ABZR87_RS11650 and ABZR87_RS11655 overlap by 4 nucleotides ABZR87_RS11655 and ABZR87_RS11660 are separated by 31 nucleotides
ABZR87_RS11640: ABZR87_RS11640 - acyl-CoA-binding protein, at 2,467,461 to 2,467,730
_RS11640
ABZR87_RS11645: ABZR87_RS11645 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 2,467,904 to 2,468,641
_RS11645
ABZR87_RS11650: ABZR87_RS11650 - ribosomal protein S18-alanine N-acetyltransferase, at 2,468,638 to 2,469,165
_RS11650
ABZR87_RS11655: ABZR87_RS11655 - uracil-DNA glycosylase, at 2,469,162 to 2,469,968
_RS11655
ABZR87_RS11660: ABZR87_RS11660 - lysophospholipid transporter LplT, at 2,470,000 to 2,471,316
_RS11660
Position (kb)
2468
2469
2470 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2467.639 kb on + strand, within ABZR87_RS11640 at 2467.639 kb on + strand, within ABZR87_RS11640 at 2467.640 kb on - strand, within ABZR87_RS11640 at 2467.640 kb on - strand, within ABZR87_RS11640 at 2467.768 kb on - strand at 2467.768 kb on - strand at 2467.892 kb on + strand at 2467.892 kb on + strand at 2467.892 kb on + strand at 2467.892 kb on + strand at 2467.893 kb on - strand at 2467.893 kb on - strand at 2467.893 kb on - strand at 2469.040 kb on + strand, within ABZR87_RS11650 at 2469.040 kb on + strand, within ABZR87_RS11650 at 2469.040 kb on + strand, within ABZR87_RS11650 at 2469.040 kb on + strand, within ABZR87_RS11650 at 2469.041 kb on - strand, within ABZR87_RS11650 at 2469.082 kb on + strand, within ABZR87_RS11650 at 2469.082 kb on + strand, within ABZR87_RS11650 at 2469.085 kb on + strand, within ABZR87_RS11650 at 2469.868 kb on - strand, within ABZR87_RS11655 at 2469.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 2,467,639 + ABZR87_RS11640 0.66 -0.3 2,467,639 + ABZR87_RS11640 0.66 +0.7 2,467,640 - ABZR87_RS11640 0.66 +0.5 2,467,640 - ABZR87_RS11640 0.66 -0.5 2,467,768 - -0.4 2,467,768 - +0.0 2,467,892 + -1.2 2,467,892 + -0.5 2,467,892 + -0.0 2,467,892 + +0.0 2,467,893 - -0.7 2,467,893 - -0.4 2,467,893 - -0.0 2,469,040 + ABZR87_RS11650 0.76 -0.8 2,469,040 + ABZR87_RS11650 0.76 -1.6 2,469,040 + ABZR87_RS11650 0.76 -0.9 2,469,040 + ABZR87_RS11650 0.76 -0.3 2,469,041 - ABZR87_RS11650 0.76 -0.5 2,469,082 + ABZR87_RS11650 0.84 -0.7 2,469,082 + ABZR87_RS11650 0.84 -0.8 2,469,085 + ABZR87_RS11650 0.85 -1.9 2,469,868 - ABZR87_RS11655 0.87 +2.1 2,469,966 + +0.1
Or see this region's nucleotide sequence