Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07655

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07650 and ABZR87_RS07655 are separated by 195 nucleotidesABZR87_RS07655 and ABZR87_RS07660 are separated by 3 nucleotides ABZR87_RS07650: ABZR87_RS07650 - tRNA dihydrouridine synthase DusB, at 1,620,048 to 1,621,115 _RS07650 ABZR87_RS07655: ABZR87_RS07655 - FAD-dependent oxidoreductase, at 1,621,311 to 1,622,594 _RS07655 ABZR87_RS07660: ABZR87_RS07660 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase, at 1,622,598 to 1,623,833 _RS07660 Position (kb) 1621 1622 1623Strain fitness (log2 ratio) -1 0 1 2at 1620.581 kb on - strand, within ABZR87_RS07650at 1620.581 kb on - strand, within ABZR87_RS07650at 1620.581 kb on - strand, within ABZR87_RS07650at 1620.655 kb on - strand, within ABZR87_RS07650at 1620.655 kb on - strand, within ABZR87_RS07650at 1620.862 kb on + strand, within ABZR87_RS07650at 1620.863 kb on - strand, within ABZR87_RS07650at 1620.863 kb on - strand, within ABZR87_RS07650at 1620.863 kb on - strand, within ABZR87_RS07650at 1621.098 kb on - strandat 1621.248 kb on + strandat 1621.248 kb on + strandat 1621.249 kb on - strandat 1621.266 kb on + strandat 1621.267 kb on - strandat 1621.709 kb on + strand, within ABZR87_RS07655at 1621.732 kb on + strand, within ABZR87_RS07655at 1621.749 kb on + strand, within ABZR87_RS07655at 1621.749 kb on + strand, within ABZR87_RS07655at 1621.750 kb on - strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.146 kb on + strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.147 kb on - strand, within ABZR87_RS07655at 1622.179 kb on + strand, within ABZR87_RS07655at 1622.180 kb on - strand, within ABZR87_RS07655at 1622.180 kb on - strand, within ABZR87_RS07655at 1622.180 kb on - strand, within ABZR87_RS07655at 1622.180 kb on - strand, within ABZR87_RS07655at 1622.321 kb on - strand, within ABZR87_RS07655

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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1,620,581 - ABZR87_RS07650 0.50 -0.5
1,620,581 - ABZR87_RS07650 0.50 -0.7
1,620,581 - ABZR87_RS07650 0.50 +2.1
1,620,655 - ABZR87_RS07650 0.57 +0.2
1,620,655 - ABZR87_RS07650 0.57 -0.1
1,620,862 + ABZR87_RS07650 0.76 -0.7
1,620,863 - ABZR87_RS07650 0.76 +0.3
1,620,863 - ABZR87_RS07650 0.76 +0.3
1,620,863 - ABZR87_RS07650 0.76 +0.4
1,621,098 - +1.2
1,621,248 + +0.2
1,621,248 + -0.4
1,621,249 - +0.8
1,621,266 + -0.8
1,621,267 - +0.1
1,621,709 + ABZR87_RS07655 0.31 -0.3
1,621,732 + ABZR87_RS07655 0.33 -0.6
1,621,749 + ABZR87_RS07655 0.34 +0.1
1,621,749 + ABZR87_RS07655 0.34 -0.4
1,621,750 - ABZR87_RS07655 0.34 +1.0
1,622,146 + ABZR87_RS07655 0.65 -0.3
1,622,146 + ABZR87_RS07655 0.65 -0.8
1,622,146 + ABZR87_RS07655 0.65 +0.3
1,622,146 + ABZR87_RS07655 0.65 +0.2
1,622,146 + ABZR87_RS07655 0.65 +0.7
1,622,146 + ABZR87_RS07655 0.65 +0.1
1,622,146 + ABZR87_RS07655 0.65 +0.0
1,622,146 + ABZR87_RS07655 0.65 +0.3
1,622,146 + ABZR87_RS07655 0.65 +0.2
1,622,146 + ABZR87_RS07655 0.65 -0.6
1,622,146 + ABZR87_RS07655 0.65 +1.1
1,622,146 + ABZR87_RS07655 0.65 -0.1
1,622,146 + ABZR87_RS07655 0.65 -1.2
1,622,146 + ABZR87_RS07655 0.65 -0.3
1,622,146 + ABZR87_RS07655 0.65 +0.1
1,622,147 - ABZR87_RS07655 0.65 -0.2
1,622,147 - ABZR87_RS07655 0.65 +0.9
1,622,147 - ABZR87_RS07655 0.65 -0.9
1,622,147 - ABZR87_RS07655 0.65 +0.1
1,622,147 - ABZR87_RS07655 0.65 -0.0
1,622,147 - ABZR87_RS07655 0.65 -0.8
1,622,179 + ABZR87_RS07655 0.68 +0.1
1,622,180 - ABZR87_RS07655 0.68 +1.8
1,622,180 - ABZR87_RS07655 0.68 +0.1
1,622,180 - ABZR87_RS07655 0.68 +1.1
1,622,180 - ABZR87_RS07655 0.68 -0.2
1,622,321 - ABZR87_RS07655 0.79 +0.8

Or see this region's nucleotide sequence