Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07020

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07015 and ABZR87_RS07020 are separated by 291 nucleotidesABZR87_RS07020 and ABZR87_RS07025 are separated by 103 nucleotides ABZR87_RS07015: ABZR87_RS07015 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 1,481,381 to 1,482,256 _RS07015 ABZR87_RS07020: ABZR87_RS07020 - dynamin-like GTPase family protein, at 1,482,548 to 1,484,491 _RS07020 ABZR87_RS07025: ABZR87_RS07025 - A/G-specific adenine glycosylase, at 1,484,595 to 1,485,743 _RS07025 Position (kb) 1482 1483 1484 1485Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1481.555 kb on + strand, within ABZR87_RS07015at 1481.555 kb on + strand, within ABZR87_RS07015at 1481.555 kb on + strand, within ABZR87_RS07015at 1481.555 kb on + strand, within ABZR87_RS07015at 1481.556 kb on - strand, within ABZR87_RS07015at 1481.556 kb on - strand, within ABZR87_RS07015at 1481.556 kb on - strand, within ABZR87_RS07015at 1481.556 kb on - strand, within ABZR87_RS07015at 1481.556 kb on - strand, within ABZR87_RS07015at 1481.650 kb on + strand, within ABZR87_RS07015at 1481.651 kb on - strand, within ABZR87_RS07015at 1481.706 kb on + strand, within ABZR87_RS07015at 1481.730 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.953 kb on + strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.954 kb on - strand, within ABZR87_RS07015at 1481.955 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.957 kb on + strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1481.958 kb on - strand, within ABZR87_RS07015at 1482.029 kb on + strand, within ABZR87_RS07015at 1482.131 kb on + strand, within ABZR87_RS07015at 1482.132 kb on - strand, within ABZR87_RS07015at 1482.132 kb on - strand, within ABZR87_RS07015at 1482.155 kb on + strand, within ABZR87_RS07015at 1482.156 kb on - strand, within ABZR87_RS07015at 1482.233 kb on + strandat 1482.233 kb on + strandat 1482.233 kb on + strandat 1482.234 kb on - strandat 1482.234 kb on - strandat 1482.310 kb on + strandat 1482.310 kb on + strandat 1482.310 kb on + strandat 1482.311 kb on - strandat 1482.311 kb on - strandat 1482.432 kb on + strandat 1482.433 kb on - strandat 1482.433 kb on - strandat 1482.433 kb on - strandat 1482.444 kb on + strandat 1482.444 kb on + strandat 1482.445 kb on - strandat 1482.467 kb on + strandat 1482.467 kb on + strandat 1482.468 kb on - strandat 1482.468 kb on - strandat 1482.478 kb on + strandat 1482.536 kb on + strandat 1482.537 kb on - strandat 1482.537 kb on - strandat 1482.537 kb on - strandat 1482.537 kb on - strandat 1482.537 kb on - strandat 1482.581 kb on + strandat 1482.581 kb on + strandat 1482.581 kb on + strandat 1482.581 kb on + strandat 1482.582 kb on - strandat 1482.582 kb on - strandat 1482.604 kb on - strandat 1482.653 kb on + strandat 1482.653 kb on + strandat 1482.654 kb on - strandat 1482.654 kb on - strandat 1482.654 kb on - strandat 1482.654 kb on - strandat 1482.848 kb on + strand, within ABZR87_RS07020at 1482.848 kb on + strand, within ABZR87_RS07020at 1482.848 kb on + strand, within ABZR87_RS07020at 1482.849 kb on - strand, within ABZR87_RS07020at 1482.849 kb on - strand, within ABZR87_RS07020at 1482.849 kb on - strand, within ABZR87_RS07020at 1482.849 kb on - strand, within ABZR87_RS07020at 1482.861 kb on - strand, within ABZR87_RS07020at 1482.861 kb on - strand, within ABZR87_RS07020at 1483.055 kb on + strand, within ABZR87_RS07020at 1483.055 kb on + strand, within ABZR87_RS07020at 1483.055 kb on + strand, within ABZR87_RS07020at 1483.056 kb on - strand, within ABZR87_RS07020at 1483.056 kb on - strand, within ABZR87_RS07020at 1483.056 kb on - strand, within ABZR87_RS07020at 1483.056 kb on - strand, within ABZR87_RS07020at 1483.056 kb on - strand, within ABZR87_RS07020at 1483.058 kb on - strand, within ABZR87_RS07020at 1483.843 kb on + strand, within ABZR87_RS07020at 1483.843 kb on + strand, within ABZR87_RS07020at 1483.844 kb on - strand, within ABZR87_RS07020at 1483.844 kb on - strand, within ABZR87_RS07020at 1483.844 kb on - strand, within ABZR87_RS07020at 1483.844 kb on - strand, within ABZR87_RS07020at 1483.844 kb on - strand, within ABZR87_RS07020at 1484.024 kb on + strand, within ABZR87_RS07020at 1484.024 kb on + strand, within ABZR87_RS07020at 1484.024 kb on + strand, within ABZR87_RS07020at 1484.024 kb on + strand, within ABZR87_RS07020at 1484.024 kb on + strand, within ABZR87_RS07020at 1484.025 kb on - strand, within ABZR87_RS07020at 1484.025 kb on - strand, within ABZR87_RS07020at 1484.025 kb on - strand, within ABZR87_RS07020at 1484.025 kb on - strand, within ABZR87_RS07020at 1484.025 kb on - strand, within ABZR87_RS07020at 1484.025 kb on - strand, within ABZR87_RS07020at 1484.025 kb on - strand, within ABZR87_RS07020at 1484.025 kb on - strand, within ABZR87_RS07020at 1484.090 kb on + strand, within ABZR87_RS07020at 1484.091 kb on - strand, within ABZR87_RS07020at 1484.357 kb on - strandat 1484.432 kb on + strandat 1484.432 kb on + strandat 1484.432 kb on + strandat 1484.432 kb on + strandat 1484.432 kb on + strandat 1484.433 kb on - strandat 1484.433 kb on - strandat 1484.433 kb on - strandat 1484.544 kb on + strandat 1484.544 kb on + strandat 1484.544 kb on + strandat 1484.545 kb on - strandat 1484.645 kb on - strandat 1484.645 kb on - strandat 1484.802 kb on + strand, within ABZR87_RS07025at 1484.803 kb on - strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.805 kb on + strand, within ABZR87_RS07025at 1484.806 kb on - strand, within ABZR87_RS07025at 1484.806 kb on - strand, within ABZR87_RS07025at 1484.895 kb on + strand, within ABZR87_RS07025at 1484.898 kb on + strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.899 kb on - strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.980 kb on + strand, within ABZR87_RS07025at 1484.981 kb on - strand, within ABZR87_RS07025at 1485.040 kb on - strand, within ABZR87_RS07025at 1485.040 kb on - strand, within ABZR87_RS07025at 1485.163 kb on + strand, within ABZR87_RS07025at 1485.164 kb on - strand, within ABZR87_RS07025at 1485.193 kb on - strand, within ABZR87_RS07025at 1485.286 kb on + strand, within ABZR87_RS07025at 1485.287 kb on - strand, within ABZR87_RS07025

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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1,481,555 + ABZR87_RS07015 0.20 -1.0
1,481,555 + ABZR87_RS07015 0.20 +0.6
1,481,555 + ABZR87_RS07015 0.20 -0.1
1,481,555 + ABZR87_RS07015 0.20 +0.9
1,481,556 - ABZR87_RS07015 0.20 +0.2
1,481,556 - ABZR87_RS07015 0.20 -0.9
1,481,556 - ABZR87_RS07015 0.20 -0.7
1,481,556 - ABZR87_RS07015 0.20 +1.4
1,481,556 - ABZR87_RS07015 0.20 +0.8
1,481,650 + ABZR87_RS07015 0.31 -0.4
1,481,651 - ABZR87_RS07015 0.31 -2.1
1,481,706 + ABZR87_RS07015 0.37 +0.7
1,481,730 + ABZR87_RS07015 0.40 +0.2
1,481,953 + ABZR87_RS07015 0.65 -1.4
1,481,953 + ABZR87_RS07015 0.65 +0.3
1,481,953 + ABZR87_RS07015 0.65 -0.1
1,481,953 + ABZR87_RS07015 0.65 -1.9
1,481,953 + ABZR87_RS07015 0.65 -0.9
1,481,953 + ABZR87_RS07015 0.65 -0.4
1,481,953 + ABZR87_RS07015 0.65 -0.2
1,481,953 + ABZR87_RS07015 0.65 -0.7
1,481,953 + ABZR87_RS07015 0.65 +0.4
1,481,954 - ABZR87_RS07015 0.65 +0.2
1,481,954 - ABZR87_RS07015 0.65 +0.4
1,481,954 - ABZR87_RS07015 0.65 -0.1
1,481,954 - ABZR87_RS07015 0.65 +0.5
1,481,954 - ABZR87_RS07015 0.65 +0.4
1,481,954 - ABZR87_RS07015 0.65 +0.1
1,481,955 + ABZR87_RS07015 0.66 -0.2
1,481,957 + ABZR87_RS07015 0.66 +0.1
1,481,957 + ABZR87_RS07015 0.66 -0.4
1,481,957 + ABZR87_RS07015 0.66 +0.5
1,481,957 + ABZR87_RS07015 0.66 -0.4
1,481,957 + ABZR87_RS07015 0.66 +0.8
1,481,957 + ABZR87_RS07015 0.66 +0.2
1,481,957 + ABZR87_RS07015 0.66 +0.4
1,481,958 - ABZR87_RS07015 0.66 +0.3
1,481,958 - ABZR87_RS07015 0.66 -0.2
1,481,958 - ABZR87_RS07015 0.66 +0.2
1,481,958 - ABZR87_RS07015 0.66 -0.3
1,481,958 - ABZR87_RS07015 0.66 +1.9
1,481,958 - ABZR87_RS07015 0.66 -0.5
1,481,958 - ABZR87_RS07015 0.66 -0.4
1,481,958 - ABZR87_RS07015 0.66 -1.2
1,482,029 + ABZR87_RS07015 0.74 -0.7
1,482,131 + ABZR87_RS07015 0.86 -0.0
1,482,132 - ABZR87_RS07015 0.86 -0.1
1,482,132 - ABZR87_RS07015 0.86 -0.3
1,482,155 + ABZR87_RS07015 0.88 +0.2
1,482,156 - ABZR87_RS07015 0.88 +0.2
1,482,233 + +0.1
1,482,233 + +0.1
1,482,233 + +1.1
1,482,234 - -0.8
1,482,234 - -0.3
1,482,310 + -0.7
1,482,310 + -0.6
1,482,310 + +0.9
1,482,311 - +0.4
1,482,311 - -0.2
1,482,432 + -0.0
1,482,433 - -2.3
1,482,433 - -2.6
1,482,433 - -1.1
1,482,444 + -2.5
1,482,444 + +0.7
1,482,445 - -0.4
1,482,467 + -0.8
1,482,467 + -0.9
1,482,468 - -2.4
1,482,468 - -2.5
1,482,478 + +0.6
1,482,536 + +0.3
1,482,537 - -2.7
1,482,537 - -2.2
1,482,537 - -2.4
1,482,537 - -2.9
1,482,537 - -3.3
1,482,581 + -0.3
1,482,581 + -1.4
1,482,581 + -3.1
1,482,581 + -5.0
1,482,582 - -5.9
1,482,582 - -3.6
1,482,604 - -2.6
1,482,653 + -2.4
1,482,653 + -1.8
1,482,654 - -0.4
1,482,654 - -2.7
1,482,654 - -2.8
1,482,654 - -3.8
1,482,848 + ABZR87_RS07020 0.15 -1.9
1,482,848 + ABZR87_RS07020 0.15 -2.9
1,482,848 + ABZR87_RS07020 0.15 -5.0
1,482,849 - ABZR87_RS07020 0.15 -4.5
1,482,849 - ABZR87_RS07020 0.15 -3.8
1,482,849 - ABZR87_RS07020 0.15 -4.0
1,482,849 - ABZR87_RS07020 0.15 -3.4
1,482,861 - ABZR87_RS07020 0.16 -4.2
1,482,861 - ABZR87_RS07020 0.16 -3.6
1,483,055 + ABZR87_RS07020 0.26 -1.5
1,483,055 + ABZR87_RS07020 0.26 -4.1
1,483,055 + ABZR87_RS07020 0.26 -3.0
1,483,056 - ABZR87_RS07020 0.26 -2.0
1,483,056 - ABZR87_RS07020 0.26 -3.3
1,483,056 - ABZR87_RS07020 0.26 -3.6
1,483,056 - ABZR87_RS07020 0.26 -1.4
1,483,056 - ABZR87_RS07020 0.26 -2.4
1,483,058 - ABZR87_RS07020 0.26 -5.1
1,483,843 + ABZR87_RS07020 0.67 -3.3
1,483,843 + ABZR87_RS07020 0.67 -3.3
1,483,844 - ABZR87_RS07020 0.67 -3.4
1,483,844 - ABZR87_RS07020 0.67 -3.1
1,483,844 - ABZR87_RS07020 0.67 -3.0
1,483,844 - ABZR87_RS07020 0.67 -5.0
1,483,844 - ABZR87_RS07020 0.67 -3.9
1,484,024 + ABZR87_RS07020 0.76 -4.3
1,484,024 + ABZR87_RS07020 0.76 -3.9
1,484,024 + ABZR87_RS07020 0.76 -5.2
1,484,024 + ABZR87_RS07020 0.76 -2.3
1,484,024 + ABZR87_RS07020 0.76 -2.6
1,484,025 - ABZR87_RS07020 0.76 -4.9
1,484,025 - ABZR87_RS07020 0.76 -2.7
1,484,025 - ABZR87_RS07020 0.76 -4.8
1,484,025 - ABZR87_RS07020 0.76 -2.6
1,484,025 - ABZR87_RS07020 0.76 -1.5
1,484,025 - ABZR87_RS07020 0.76 -3.2
1,484,025 - ABZR87_RS07020 0.76 -3.4
1,484,025 - ABZR87_RS07020 0.76 -3.2
1,484,090 + ABZR87_RS07020 0.79 -1.2
1,484,091 - ABZR87_RS07020 0.79 -1.4
1,484,357 - -2.9
1,484,432 + -0.2
1,484,432 + -0.6
1,484,432 + -0.5
1,484,432 + -1.2
1,484,432 + +0.6
1,484,433 - -1.3
1,484,433 - -0.2
1,484,433 - -1.5
1,484,544 + -0.1
1,484,544 + +0.1
1,484,544 + +0.3
1,484,545 - +0.2
1,484,645 - +0.1
1,484,645 - -0.4
1,484,802 + ABZR87_RS07025 0.18 +0.7
1,484,803 - ABZR87_RS07025 0.18 +0.5
1,484,805 + ABZR87_RS07025 0.18 +0.3
1,484,805 + ABZR87_RS07025 0.18 -0.9
1,484,805 + ABZR87_RS07025 0.18 -1.1
1,484,805 + ABZR87_RS07025 0.18 +0.1
1,484,805 + ABZR87_RS07025 0.18 +0.1
1,484,805 + ABZR87_RS07025 0.18 +0.1
1,484,806 - ABZR87_RS07025 0.18 -0.6
1,484,806 - ABZR87_RS07025 0.18 -0.7
1,484,895 + ABZR87_RS07025 0.26 -0.8
1,484,898 + ABZR87_RS07025 0.26 +0.1
1,484,899 - ABZR87_RS07025 0.26 +0.1
1,484,899 - ABZR87_RS07025 0.26 +1.5
1,484,899 - ABZR87_RS07025 0.26 -1.0
1,484,899 - ABZR87_RS07025 0.26 -1.0
1,484,899 - ABZR87_RS07025 0.26 -0.2
1,484,899 - ABZR87_RS07025 0.26 -0.9
1,484,899 - ABZR87_RS07025 0.26 -0.8
1,484,980 + ABZR87_RS07025 0.34 -0.4
1,484,980 + ABZR87_RS07025 0.34 -0.4
1,484,980 + ABZR87_RS07025 0.34 -0.5
1,484,980 + ABZR87_RS07025 0.34 -0.7
1,484,980 + ABZR87_RS07025 0.34 -0.1
1,484,980 + ABZR87_RS07025 0.34 -0.1
1,484,981 - ABZR87_RS07025 0.34 +2.2
1,485,040 - ABZR87_RS07025 0.39 -0.2
1,485,040 - ABZR87_RS07025 0.39 -0.2
1,485,163 + ABZR87_RS07025 0.49 +0.1
1,485,164 - ABZR87_RS07025 0.50 -0.1
1,485,193 - ABZR87_RS07025 0.52 +0.2
1,485,286 + ABZR87_RS07025 0.60 -1.0
1,485,287 - ABZR87_RS07025 0.60 -0.3

Or see this region's nucleotide sequence