Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04670 and ABZR87_RS04675 are separated by 54 nucleotides ABZR87_RS04675 and ABZR87_RS04680 are separated by 219 nucleotides ABZR87_RS04680 and ABZR87_RS04685 are separated by 96 nucleotides ABZR87_RS04685 and ABZR87_RS04690 are separated by 373 nucleotides
ABZR87_RS04670: ABZR87_RS04670 - LysR family transcriptional regulator, at 976,115 to 977,011
_RS04670
ABZR87_RS04675: ABZR87_RS04675 - hypothetical protein, at 977,066 to 977,374
_RS04675
ABZR87_RS04680: ABZR87_RS04680 - nickel/cobalt efflux protein RcnA, at 977,594 to 978,721
_RS04680
ABZR87_RS04685: ABZR87_RS04685 - metal/formaldehyde-sensitive transcriptional repressor, at 978,818 to 979,090
_RS04685
ABZR87_RS04690: ABZR87_RS04690 - DMT family transporter, at 979,464 to 980,327
_RS04690
Position (kb) 977
978
979 Strain fitness (log2 ratio) -2
-1
0
1
2 at 976.614 kb on - strand, within ABZR87_RS04670 at 976.614 kb on - strand, within ABZR87_RS04670 at 976.614 kb on - strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.776 kb on - strand, within ABZR87_RS04670 at 976.776 kb on - strand, within ABZR87_RS04670 at 976.882 kb on + strand, within ABZR87_RS04670 at 976.883 kb on - strand, within ABZR87_RS04670 at 976.883 kb on - strand, within ABZR87_RS04670 at 976.951 kb on - strand at 976.951 kb on - strand at 976.973 kb on + strand at 976.973 kb on + strand at 976.974 kb on - strand at 976.974 kb on - strand at 976.974 kb on - strand at 977.035 kb on + strand at 977.097 kb on + strand, within ABZR87_RS04675 at 977.097 kb on + strand, within ABZR87_RS04675 at 977.105 kb on - strand, within ABZR87_RS04675 at 977.164 kb on - strand, within ABZR87_RS04675 at 977.181 kb on + strand, within ABZR87_RS04675 at 977.186 kb on - strand, within ABZR87_RS04675 at 977.196 kb on + strand, within ABZR87_RS04675 at 977.196 kb on + strand, within ABZR87_RS04675 at 977.196 kb on + strand, within ABZR87_RS04675 at 977.197 kb on - strand, within ABZR87_RS04675 at 977.197 kb on - strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.202 kb on + strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.203 kb on - strand, within ABZR87_RS04675 at 977.268 kb on + strand, within ABZR87_RS04675 at 977.269 kb on - strand, within ABZR87_RS04675 at 977.277 kb on + strand, within ABZR87_RS04675 at 977.278 kb on - strand, within ABZR87_RS04675 at 977.356 kb on + strand at 977.357 kb on - strand at 977.528 kb on + strand at 977.529 kb on - strand at 977.529 kb on - strand at 977.538 kb on + strand at 977.539 kb on - strand at 977.539 kb on - strand at 977.539 kb on - strand at 977.539 kb on - strand at 977.595 kb on + strand at 977.595 kb on + strand at 977.637 kb on + strand at 977.637 kb on + strand at 977.637 kb on + strand at 977.637 kb on + strand at 977.637 kb on + strand at 977.637 kb on + strand at 977.637 kb on + strand at 977.637 kb on + strand at 977.638 kb on - strand at 977.638 kb on - strand at 977.638 kb on - strand at 977.638 kb on - strand at 977.638 kb on - strand at 977.638 kb on - strand at 977.638 kb on - strand at 977.638 kb on - strand at 977.638 kb on - strand at 977.638 kb on - strand at 977.673 kb on + strand at 977.979 kb on + strand, within ABZR87_RS04680 at 977.980 kb on - strand, within ABZR87_RS04680 at 978.060 kb on + strand, within ABZR87_RS04680 at 978.060 kb on + strand, within ABZR87_RS04680 at 978.060 kb on + strand, within ABZR87_RS04680 at 978.060 kb on + strand, within ABZR87_RS04680 at 978.061 kb on - strand, within ABZR87_RS04680 at 978.102 kb on - strand, within ABZR87_RS04680 at 978.102 kb on - strand, within ABZR87_RS04680 at 978.456 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.495 kb on + strand, within ABZR87_RS04680 at 978.533 kb on - strand, within ABZR87_RS04680 at 978.533 kb on - strand, within ABZR87_RS04680 at 978.754 kb on + strand at 978.769 kb on + strand at 978.770 kb on - strand at 978.770 kb on - strand at 978.770 kb on - strand at 978.826 kb on + strand at 978.826 kb on + strand at 978.826 kb on + strand at 978.827 kb on - strand at 978.827 kb on - strand at 978.827 kb on - strand at 978.838 kb on + strand at 978.839 kb on - strand at 979.095 kb on - strand at 979.130 kb on + strand at 979.307 kb on - strand at 979.510 kb on + strand at 979.510 kb on + strand at 979.510 kb on + strand at 979.511 kb on - strand at 979.598 kb on + strand, within ABZR87_RS04690 at 979.710 kb on + strand, within ABZR87_RS04690
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 976,614 - ABZR87_RS04670 0.56 -0.1 976,614 - ABZR87_RS04670 0.56 -0.1 976,614 - ABZR87_RS04670 0.56 -0.9 976,775 + ABZR87_RS04670 0.74 +2.2 976,775 + ABZR87_RS04670 0.74 +1.7 976,775 + ABZR87_RS04670 0.74 +0.3 976,775 + ABZR87_RS04670 0.74 +0.2 976,775 + ABZR87_RS04670 0.74 -0.5 976,775 + ABZR87_RS04670 0.74 +0.7 976,775 + ABZR87_RS04670 0.74 -0.1 976,776 - ABZR87_RS04670 0.74 -0.1 976,776 - ABZR87_RS04670 0.74 -1.1 976,882 + ABZR87_RS04670 0.86 -0.7 976,883 - ABZR87_RS04670 0.86 -0.8 976,883 - ABZR87_RS04670 0.86 +1.1 976,951 - +0.2 976,951 - +0.7 976,973 + +0.7 976,973 + -0.5 976,974 - -0.4 976,974 - -1.2 976,974 - +0.2 977,035 + -0.2 977,097 + ABZR87_RS04675 0.10 -0.9 977,097 + ABZR87_RS04675 0.10 +0.6 977,105 - ABZR87_RS04675 0.13 -0.1 977,164 - ABZR87_RS04675 0.32 +0.5 977,181 + ABZR87_RS04675 0.37 -0.1 977,186 - ABZR87_RS04675 0.39 +0.9 977,196 + ABZR87_RS04675 0.42 -0.8 977,196 + ABZR87_RS04675 0.42 -0.5 977,196 + ABZR87_RS04675 0.42 +0.2 977,197 - ABZR87_RS04675 0.42 -1.9 977,197 - ABZR87_RS04675 0.42 +1.2 977,202 + ABZR87_RS04675 0.44 +0.1 977,202 + ABZR87_RS04675 0.44 +0.3 977,202 + ABZR87_RS04675 0.44 -0.3 977,202 + ABZR87_RS04675 0.44 -0.5 977,202 + ABZR87_RS04675 0.44 -0.2 977,202 + ABZR87_RS04675 0.44 -0.4 977,202 + ABZR87_RS04675 0.44 +0.5 977,202 + ABZR87_RS04675 0.44 +0.8 977,202 + ABZR87_RS04675 0.44 +0.4 977,202 + ABZR87_RS04675 0.44 +1.3 977,202 + ABZR87_RS04675 0.44 -0.3 977,202 + ABZR87_RS04675 0.44 -0.8 977,202 + ABZR87_RS04675 0.44 +1.1 977,202 + ABZR87_RS04675 0.44 -0.1 977,202 + ABZR87_RS04675 0.44 -0.3 977,202 + ABZR87_RS04675 0.44 +0.2 977,202 + ABZR87_RS04675 0.44 +1.7 977,203 - ABZR87_RS04675 0.44 -0.1 977,203 - ABZR87_RS04675 0.44 +0.3 977,203 - ABZR87_RS04675 0.44 +0.4 977,203 - ABZR87_RS04675 0.44 -0.5 977,203 - ABZR87_RS04675 0.44 +0.7 977,203 - ABZR87_RS04675 0.44 -0.1 977,203 - ABZR87_RS04675 0.44 +2.5 977,203 - ABZR87_RS04675 0.44 -0.0 977,203 - ABZR87_RS04675 0.44 +0.1 977,203 - ABZR87_RS04675 0.44 -0.6 977,203 - ABZR87_RS04675 0.44 -0.0 977,203 - ABZR87_RS04675 0.44 -0.7 977,203 - ABZR87_RS04675 0.44 -0.3 977,203 - ABZR87_RS04675 0.44 -0.3 977,203 - ABZR87_RS04675 0.44 +1.7 977,203 - ABZR87_RS04675 0.44 +0.7 977,203 - ABZR87_RS04675 0.44 -2.4 977,203 - ABZR87_RS04675 0.44 +0.1 977,203 - ABZR87_RS04675 0.44 -0.0 977,268 + ABZR87_RS04675 0.65 +0.5 977,269 - ABZR87_RS04675 0.66 -0.3 977,277 + ABZR87_RS04675 0.68 +0.6 977,278 - ABZR87_RS04675 0.69 -0.5 977,356 + +0.0 977,357 - -0.3 977,528 + +0.0 977,529 - -0.0 977,529 - +0.1 977,538 + +0.1 977,539 - +1.3 977,539 - +0.5 977,539 - +0.2 977,539 - +0.7 977,595 + -0.5 977,595 + -0.2 977,637 + -0.3 977,637 + +0.0 977,637 + +0.2 977,637 + +0.1 977,637 + +0.4 977,637 + +1.0 977,637 + -0.9 977,637 + -0.2 977,638 - +0.7 977,638 - -0.5 977,638 - -0.3 977,638 - +0.4 977,638 - +0.5 977,638 - +0.3 977,638 - -0.7 977,638 - +0.2 977,638 - -0.7 977,638 - -1.3 977,673 + -0.9 977,979 + ABZR87_RS04680 0.34 +1.0 977,980 - ABZR87_RS04680 0.34 -0.7 978,060 + ABZR87_RS04680 0.41 +0.1 978,060 + ABZR87_RS04680 0.41 +1.3 978,060 + ABZR87_RS04680 0.41 +0.3 978,060 + ABZR87_RS04680 0.41 +0.3 978,061 - ABZR87_RS04680 0.41 +0.5 978,102 - ABZR87_RS04680 0.45 -0.8 978,102 - ABZR87_RS04680 0.45 -0.5 978,456 + ABZR87_RS04680 0.76 -0.0 978,495 + ABZR87_RS04680 0.80 -1.0 978,495 + ABZR87_RS04680 0.80 +0.4 978,495 + ABZR87_RS04680 0.80 -0.6 978,495 + ABZR87_RS04680 0.80 +2.2 978,495 + ABZR87_RS04680 0.80 +0.1 978,533 - ABZR87_RS04680 0.83 -0.3 978,533 - ABZR87_RS04680 0.83 +0.1 978,754 + +0.0 978,769 + -1.1 978,770 - +0.2 978,770 - -0.7 978,770 - +0.2 978,826 + +0.7 978,826 + +0.1 978,826 + +1.7 978,827 - -0.9 978,827 - -0.1 978,827 - -0.2 978,838 + +1.1 978,839 - -0.6 979,095 - +0.4 979,130 + +0.8 979,307 - -0.5 979,510 + -1.6 979,510 + -0.7 979,510 + -0.2 979,511 - +0.6 979,598 + ABZR87_RS04690 0.16 +0.7 979,710 + ABZR87_RS04690 0.28 +0.1
Or see this region's nucleotide sequence