Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04560 and ABZR87_RS04565 are separated by 23 nucleotides ABZR87_RS04565 and ABZR87_RS04570 are separated by 288 nucleotides ABZR87_RS04570 and ABZR87_RS04575 are separated by 17 nucleotides
ABZR87_RS04560: ABZR87_RS04560 - hydrolase, at 954,705 to 955,304
_RS04560
ABZR87_RS04565: ABZR87_RS04565 - PaaI family thioesterase, at 955,328 to 955,762
_RS04565
ABZR87_RS04570: ABZR87_RS04570 - porin, at 956,051 to 957,178
_RS04570
ABZR87_RS04575: ABZR87_RS04575 - ABC transporter substrate-binding protein, at 957,196 to 958,245
_RS04575
Position (kb) 956
957
958 Strain fitness (log2 ratio) -2
-1
0
1
2 at 955.099 kb on + strand, within ABZR87_RS04560 at 955.099 kb on + strand, within ABZR87_RS04560 at 955.100 kb on - strand, within ABZR87_RS04560 at 955.100 kb on - strand, within ABZR87_RS04560 at 955.185 kb on + strand, within ABZR87_RS04560 at 955.186 kb on - strand, within ABZR87_RS04560 at 955.199 kb on + strand, within ABZR87_RS04560 at 955.200 kb on - strand, within ABZR87_RS04560 at 955.329 kb on + strand at 955.330 kb on - strand at 955.331 kb on - strand at 955.463 kb on + strand, within ABZR87_RS04565 at 955.509 kb on + strand, within ABZR87_RS04565 at 955.531 kb on + strand, within ABZR87_RS04565 at 955.806 kb on - strand at 955.887 kb on + strand at 955.894 kb on + strand at 955.895 kb on - strand at 955.895 kb on - strand at 955.895 kb on - strand at 955.944 kb on + strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 956.144 kb on + strand at 956.144 kb on + strand at 956.291 kb on + strand, within ABZR87_RS04570 at 956.395 kb on + strand, within ABZR87_RS04570 at 956.396 kb on - strand, within ABZR87_RS04570 at 956.447 kb on + strand, within ABZR87_RS04570 at 956.447 kb on + strand, within ABZR87_RS04570 at 956.448 kb on - strand, within ABZR87_RS04570 at 956.459 kb on + strand, within ABZR87_RS04570 at 956.459 kb on + strand, within ABZR87_RS04570 at 956.460 kb on - strand, within ABZR87_RS04570 at 956.496 kb on - strand, within ABZR87_RS04570 at 956.531 kb on + strand, within ABZR87_RS04570 at 956.531 kb on + strand, within ABZR87_RS04570 at 956.532 kb on - strand, within ABZR87_RS04570 at 956.532 kb on - strand, within ABZR87_RS04570 at 956.540 kb on - strand, within ABZR87_RS04570 at 956.619 kb on - strand, within ABZR87_RS04570 at 956.681 kb on + strand, within ABZR87_RS04570 at 956.681 kb on + strand, within ABZR87_RS04570 at 956.681 kb on + strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.753 kb on + strand, within ABZR87_RS04570 at 956.754 kb on - strand, within ABZR87_RS04570 at 956.805 kb on - strand, within ABZR87_RS04570 at 956.861 kb on + strand, within ABZR87_RS04570 at 956.861 kb on + strand, within ABZR87_RS04570 at 956.861 kb on + strand, within ABZR87_RS04570 at 956.862 kb on - strand, within ABZR87_RS04570 at 956.904 kb on - strand, within ABZR87_RS04570 at 956.975 kb on + strand, within ABZR87_RS04570 at 956.975 kb on + strand, within ABZR87_RS04570 at 956.976 kb on - strand, within ABZR87_RS04570 at 956.976 kb on - strand, within ABZR87_RS04570 at 957.030 kb on - strand, within ABZR87_RS04570 at 957.044 kb on + strand, within ABZR87_RS04570 at 957.044 kb on + strand, within ABZR87_RS04570 at 957.044 kb on + strand, within ABZR87_RS04570 at 957.044 kb on + strand, within ABZR87_RS04570 at 957.045 kb on - strand, within ABZR87_RS04570 at 957.045 kb on - strand, within ABZR87_RS04570 at 957.045 kb on - strand, within ABZR87_RS04570 at 957.072 kb on - strand at 957.072 kb on - strand at 957.086 kb on + strand at 957.086 kb on + strand at 957.087 kb on - strand at 957.087 kb on - strand at 957.087 kb on - strand at 957.107 kb on + strand at 957.107 kb on + strand at 957.107 kb on + strand at 957.107 kb on + strand at 957.107 kb on + strand at 957.108 kb on - strand at 957.108 kb on - strand at 957.108 kb on - strand at 957.108 kb on - strand at 957.108 kb on - strand at 957.108 kb on - strand at 957.176 kb on + strand at 957.176 kb on + strand at 957.177 kb on - strand at 957.177 kb on - strand at 957.197 kb on + strand at 957.234 kb on + strand at 957.234 kb on + strand at 957.234 kb on + strand at 957.234 kb on + strand at 957.235 kb on - strand at 957.236 kb on + strand at 957.236 kb on + strand at 957.236 kb on + strand at 957.236 kb on + strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.378 kb on - strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.530 kb on + strand, within ABZR87_RS04575 at 957.531 kb on - strand, within ABZR87_RS04575 at 957.531 kb on - strand, within ABZR87_RS04575 at 957.725 kb on + strand, within ABZR87_RS04575 at 957.726 kb on - strand, within ABZR87_RS04575 at 957.726 kb on - strand, within ABZR87_RS04575 at 957.726 kb on - strand, within ABZR87_RS04575 at 957.726 kb on - strand, within ABZR87_RS04575 at 957.726 kb on - strand, within ABZR87_RS04575 at 957.761 kb on + strand, within ABZR87_RS04575 at 957.762 kb on - strand, within ABZR87_RS04575 at 957.895 kb on + strand, within ABZR87_RS04575 at 957.950 kb on + strand, within ABZR87_RS04575 at 957.950 kb on + strand, within ABZR87_RS04575 at 957.951 kb on - strand, within ABZR87_RS04575 at 957.961 kb on + strand, within ABZR87_RS04575 at 957.961 kb on + strand, within ABZR87_RS04575 at 957.962 kb on - strand, within ABZR87_RS04575 at 957.962 kb on - strand, within ABZR87_RS04575 at 957.962 kb on - strand, within ABZR87_RS04575 at 957.962 kb on - strand, within ABZR87_RS04575 at 957.962 kb on - strand, within ABZR87_RS04575 at 958.088 kb on + strand, within ABZR87_RS04575 at 958.088 kb on + strand, within ABZR87_RS04575 at 958.088 kb on + strand, within ABZR87_RS04575 at 958.089 kb on - strand, within ABZR87_RS04575 at 958.089 kb on - strand, within ABZR87_RS04575 at 958.089 kb on - strand, within ABZR87_RS04575 at 958.089 kb on - strand, within ABZR87_RS04575 at 958.089 kb on - strand, within ABZR87_RS04575
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 955,099 + ABZR87_RS04560 0.66 +0.0 955,099 + ABZR87_RS04560 0.66 +0.4 955,100 - ABZR87_RS04560 0.66 -0.5 955,100 - ABZR87_RS04560 0.66 -0.5 955,185 + ABZR87_RS04560 0.80 -0.9 955,186 - ABZR87_RS04560 0.80 +0.2 955,199 + ABZR87_RS04560 0.82 -0.1 955,200 - ABZR87_RS04560 0.82 +0.1 955,329 + +0.3 955,330 - +0.6 955,331 - -0.3 955,463 + ABZR87_RS04565 0.31 -0.9 955,509 + ABZR87_RS04565 0.42 -0.9 955,531 + ABZR87_RS04565 0.47 -0.3 955,806 - +0.2 955,887 + -0.1 955,894 + +0.2 955,895 - +0.9 955,895 - +0.5 955,895 - +0.3 955,944 + +2.2 955,945 - +0.4 955,945 - +0.5 955,945 - -0.1 955,945 - -0.8 955,945 - +0.6 955,945 - -1.2 955,945 - -0.5 956,144 + -1.9 956,144 + +1.0 956,291 + ABZR87_RS04570 0.21 -0.6 956,395 + ABZR87_RS04570 0.30 -1.1 956,396 - ABZR87_RS04570 0.31 -0.0 956,447 + ABZR87_RS04570 0.35 +0.2 956,447 + ABZR87_RS04570 0.35 +0.3 956,448 - ABZR87_RS04570 0.35 -0.1 956,459 + ABZR87_RS04570 0.36 +0.2 956,459 + ABZR87_RS04570 0.36 -1.2 956,460 - ABZR87_RS04570 0.36 -2.4 956,496 - ABZR87_RS04570 0.39 -1.5 956,531 + ABZR87_RS04570 0.43 +1.4 956,531 + ABZR87_RS04570 0.43 +0.5 956,532 - ABZR87_RS04570 0.43 +0.5 956,532 - ABZR87_RS04570 0.43 -0.1 956,540 - ABZR87_RS04570 0.43 -0.2 956,619 - ABZR87_RS04570 0.50 -0.6 956,681 + ABZR87_RS04570 0.56 +0.2 956,681 + ABZR87_RS04570 0.56 -0.3 956,681 + ABZR87_RS04570 0.56 -1.9 956,682 - ABZR87_RS04570 0.56 -2.6 956,682 - ABZR87_RS04570 0.56 +1.2 956,682 - ABZR87_RS04570 0.56 +1.2 956,682 - ABZR87_RS04570 0.56 +0.6 956,682 - ABZR87_RS04570 0.56 -0.1 956,753 + ABZR87_RS04570 0.62 +0.7 956,754 - ABZR87_RS04570 0.62 -0.3 956,805 - ABZR87_RS04570 0.67 +0.6 956,861 + ABZR87_RS04570 0.72 +0.3 956,861 + ABZR87_RS04570 0.72 +0.8 956,861 + ABZR87_RS04570 0.72 +0.6 956,862 - ABZR87_RS04570 0.72 -0.8 956,904 - ABZR87_RS04570 0.76 -1.5 956,975 + ABZR87_RS04570 0.82 +0.4 956,975 + ABZR87_RS04570 0.82 +0.3 956,976 - ABZR87_RS04570 0.82 +0.2 956,976 - ABZR87_RS04570 0.82 -0.5 957,030 - ABZR87_RS04570 0.87 +1.0 957,044 + ABZR87_RS04570 0.88 +1.4 957,044 + ABZR87_RS04570 0.88 +0.7 957,044 + ABZR87_RS04570 0.88 +0.4 957,044 + ABZR87_RS04570 0.88 +0.8 957,045 - ABZR87_RS04570 0.88 +0.4 957,045 - ABZR87_RS04570 0.88 -1.1 957,045 - ABZR87_RS04570 0.88 +0.5 957,072 - +0.5 957,072 - +0.1 957,086 + +0.2 957,086 + +0.2 957,087 - +0.3 957,087 - -0.2 957,087 - +0.4 957,107 + +1.2 957,107 + -0.2 957,107 + -0.7 957,107 + -0.1 957,107 + -0.1 957,108 - +0.2 957,108 - +0.3 957,108 - +0.6 957,108 - -0.7 957,108 - -0.6 957,108 - -0.5 957,176 + +0.6 957,176 + +0.0 957,177 - -0.1 957,177 - +0.0 957,197 + -1.4 957,234 + -0.1 957,234 + -0.4 957,234 + -0.1 957,234 + -0.0 957,235 - +0.1 957,236 + -0.3 957,236 + +0.0 957,236 + -0.3 957,236 + +0.5 957,237 - +1.2 957,237 - -0.9 957,237 - -1.4 957,237 - -0.9 957,237 - +0.1 957,237 - -0.8 957,237 - -0.5 957,378 - ABZR87_RS04575 0.17 -0.3 957,452 + ABZR87_RS04575 0.24 -0.4 957,452 + ABZR87_RS04575 0.24 -0.7 957,452 + ABZR87_RS04575 0.24 +1.1 957,452 + ABZR87_RS04575 0.24 +0.8 957,452 + ABZR87_RS04575 0.24 -0.4 957,452 + ABZR87_RS04575 0.24 +0.6 957,453 - ABZR87_RS04575 0.24 +0.4 957,453 - ABZR87_RS04575 0.24 -0.2 957,453 - ABZR87_RS04575 0.24 -0.5 957,453 - ABZR87_RS04575 0.24 -0.6 957,453 - ABZR87_RS04575 0.24 +1.0 957,453 - ABZR87_RS04575 0.24 +0.2 957,453 - ABZR87_RS04575 0.24 -1.1 957,453 - ABZR87_RS04575 0.24 +0.3 957,530 + ABZR87_RS04575 0.32 -0.5 957,531 - ABZR87_RS04575 0.32 +0.5 957,531 - ABZR87_RS04575 0.32 -0.7 957,725 + ABZR87_RS04575 0.50 +0.5 957,726 - ABZR87_RS04575 0.50 +0.9 957,726 - ABZR87_RS04575 0.50 +0.1 957,726 - ABZR87_RS04575 0.50 +0.8 957,726 - ABZR87_RS04575 0.50 -0.7 957,726 - ABZR87_RS04575 0.50 -2.0 957,761 + ABZR87_RS04575 0.54 -0.7 957,762 - ABZR87_RS04575 0.54 -0.1 957,895 + ABZR87_RS04575 0.67 +1.6 957,950 + ABZR87_RS04575 0.72 -0.3 957,950 + ABZR87_RS04575 0.72 +0.1 957,951 - ABZR87_RS04575 0.72 -0.4 957,961 + ABZR87_RS04575 0.73 -0.7 957,961 + ABZR87_RS04575 0.73 +0.5 957,962 - ABZR87_RS04575 0.73 +0.5 957,962 - ABZR87_RS04575 0.73 -0.2 957,962 - ABZR87_RS04575 0.73 +0.1 957,962 - ABZR87_RS04575 0.73 -1.7 957,962 - ABZR87_RS04575 0.73 +1.8 958,088 + ABZR87_RS04575 0.85 -0.5 958,088 + ABZR87_RS04575 0.85 +0.0 958,088 + ABZR87_RS04575 0.85 +0.2 958,089 - ABZR87_RS04575 0.85 +0.6 958,089 - ABZR87_RS04575 0.85 +0.6 958,089 - ABZR87_RS04575 0.85 -0.6 958,089 - ABZR87_RS04575 0.85 +0.2 958,089 - ABZR87_RS04575 0.85 -0.4
Or see this region's nucleotide sequence