Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04565

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04555 and ABZR87_RS04560 are separated by 19 nucleotidesABZR87_RS04560 and ABZR87_RS04565 are separated by 23 nucleotidesABZR87_RS04565 and ABZR87_RS04570 are separated by 288 nucleotides ABZR87_RS04555: ABZR87_RS04555 - helix-turn-helix transcriptional regulator, at 953,792 to 954,685 _RS04555 ABZR87_RS04560: ABZR87_RS04560 - hydrolase, at 954,705 to 955,304 _RS04560 ABZR87_RS04565: ABZR87_RS04565 - PaaI family thioesterase, at 955,328 to 955,762 _RS04565 ABZR87_RS04570: ABZR87_RS04570 - porin, at 956,051 to 957,178 _RS04570 Position (kb) 955 956Strain fitness (log2 ratio) -2 -1 0 1 2at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.363 kb on - strand, within ABZR87_RS04555at 954.363 kb on - strand, within ABZR87_RS04555at 954.363 kb on - strand, within ABZR87_RS04555at 954.374 kb on + strand, within ABZR87_RS04555at 954.375 kb on - strand, within ABZR87_RS04555at 954.375 kb on - strand, within ABZR87_RS04555at 954.375 kb on - strand, within ABZR87_RS04555at 954.375 kb on - strand, within ABZR87_RS04555at 954.523 kb on + strand, within ABZR87_RS04555at 954.611 kb on + strandat 954.612 kb on - strandat 954.612 kb on - strandat 954.612 kb on - strandat 954.612 kb on - strandat 954.659 kb on + strandat 954.659 kb on + strandat 954.659 kb on + strandat 954.659 kb on + strandat 954.659 kb on + strandat 954.659 kb on + strandat 954.660 kb on - strandat 954.660 kb on - strandat 954.660 kb on - strandat 954.660 kb on - strandat 954.765 kb on + strand, within ABZR87_RS04560at 954.765 kb on + strand, within ABZR87_RS04560at 954.765 kb on + strand, within ABZR87_RS04560at 954.766 kb on - strand, within ABZR87_RS04560at 954.955 kb on + strand, within ABZR87_RS04560at 954.956 kb on - strand, within ABZR87_RS04560at 955.099 kb on + strand, within ABZR87_RS04560at 955.099 kb on + strand, within ABZR87_RS04560at 955.100 kb on - strand, within ABZR87_RS04560at 955.100 kb on - strand, within ABZR87_RS04560at 955.185 kb on + strand, within ABZR87_RS04560at 955.186 kb on - strand, within ABZR87_RS04560at 955.199 kb on + strand, within ABZR87_RS04560at 955.200 kb on - strand, within ABZR87_RS04560at 955.329 kb on + strandat 955.330 kb on - strandat 955.331 kb on - strandat 955.463 kb on + strand, within ABZR87_RS04565at 955.509 kb on + strand, within ABZR87_RS04565at 955.531 kb on + strand, within ABZR87_RS04565at 955.806 kb on - strandat 955.887 kb on + strandat 955.894 kb on + strandat 955.895 kb on - strandat 955.895 kb on - strandat 955.895 kb on - strandat 955.944 kb on + strandat 955.945 kb on - strandat 955.945 kb on - strandat 955.945 kb on - strandat 955.945 kb on - strandat 955.945 kb on - strandat 955.945 kb on - strandat 955.945 kb on - strandat 956.144 kb on + strandat 956.144 kb on + strandat 956.291 kb on + strand, within ABZR87_RS04570at 956.395 kb on + strand, within ABZR87_RS04570at 956.396 kb on - strand, within ABZR87_RS04570at 956.447 kb on + strand, within ABZR87_RS04570at 956.447 kb on + strand, within ABZR87_RS04570at 956.448 kb on - strand, within ABZR87_RS04570at 956.459 kb on + strand, within ABZR87_RS04570at 956.459 kb on + strand, within ABZR87_RS04570at 956.460 kb on - strand, within ABZR87_RS04570at 956.496 kb on - strand, within ABZR87_RS04570at 956.531 kb on + strand, within ABZR87_RS04570at 956.531 kb on + strand, within ABZR87_RS04570at 956.532 kb on - strand, within ABZR87_RS04570at 956.532 kb on - strand, within ABZR87_RS04570at 956.540 kb on - strand, within ABZR87_RS04570at 956.619 kb on - strand, within ABZR87_RS04570at 956.681 kb on + strand, within ABZR87_RS04570at 956.681 kb on + strand, within ABZR87_RS04570at 956.681 kb on + strand, within ABZR87_RS04570at 956.682 kb on - strand, within ABZR87_RS04570at 956.682 kb on - strand, within ABZR87_RS04570at 956.682 kb on - strand, within ABZR87_RS04570at 956.682 kb on - strand, within ABZR87_RS04570at 956.682 kb on - strand, within ABZR87_RS04570at 956.753 kb on + strand, within ABZR87_RS04570at 956.754 kb on - strand, within ABZR87_RS04570

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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954,362 + ABZR87_RS04555 0.64 -0.6
954,362 + ABZR87_RS04555 0.64 -0.4
954,362 + ABZR87_RS04555 0.64 +0.2
954,362 + ABZR87_RS04555 0.64 +0.3
954,362 + ABZR87_RS04555 0.64 +0.4
954,362 + ABZR87_RS04555 0.64 -0.5
954,362 + ABZR87_RS04555 0.64 -0.4
954,362 + ABZR87_RS04555 0.64 -0.1
954,362 + ABZR87_RS04555 0.64 -0.5
954,362 + ABZR87_RS04555 0.64 +0.3
954,362 + ABZR87_RS04555 0.64 -0.2
954,362 + ABZR87_RS04555 0.64 -0.9
954,362 + ABZR87_RS04555 0.64 +0.4
954,362 + ABZR87_RS04555 0.64 -0.6
954,362 + ABZR87_RS04555 0.64 -0.6
954,363 - ABZR87_RS04555 0.64 -0.8
954,363 - ABZR87_RS04555 0.64 +0.1
954,363 - ABZR87_RS04555 0.64 -0.7
954,374 + ABZR87_RS04555 0.65 -0.1
954,375 - ABZR87_RS04555 0.65 +0.9
954,375 - ABZR87_RS04555 0.65 -0.9
954,375 - ABZR87_RS04555 0.65 +0.3
954,375 - ABZR87_RS04555 0.65 -0.6
954,523 + ABZR87_RS04555 0.82 +0.6
954,611 + +0.1
954,612 - -0.9
954,612 - +0.4
954,612 - -0.3
954,612 - -0.1
954,659 + -0.0
954,659 + +1.6
954,659 + +0.2
954,659 + +0.2
954,659 + -0.4
954,659 + +1.1
954,660 - +0.1
954,660 - +0.7
954,660 - -0.0
954,660 - +0.0
954,765 + ABZR87_RS04560 0.10 +0.1
954,765 + ABZR87_RS04560 0.10 -1.8
954,765 + ABZR87_RS04560 0.10 +0.5
954,766 - ABZR87_RS04560 0.10 +0.1
954,955 + ABZR87_RS04560 0.42 -0.1
954,956 - ABZR87_RS04560 0.42 -0.4
955,099 + ABZR87_RS04560 0.66 +0.0
955,099 + ABZR87_RS04560 0.66 +0.4
955,100 - ABZR87_RS04560 0.66 -0.5
955,100 - ABZR87_RS04560 0.66 -0.5
955,185 + ABZR87_RS04560 0.80 -0.9
955,186 - ABZR87_RS04560 0.80 +0.2
955,199 + ABZR87_RS04560 0.82 -0.1
955,200 - ABZR87_RS04560 0.82 +0.1
955,329 + +0.3
955,330 - +0.6
955,331 - -0.3
955,463 + ABZR87_RS04565 0.31 -0.9
955,509 + ABZR87_RS04565 0.42 -0.9
955,531 + ABZR87_RS04565 0.47 -0.3
955,806 - +0.2
955,887 + -0.1
955,894 + +0.2
955,895 - +0.9
955,895 - +0.5
955,895 - +0.3
955,944 + +2.2
955,945 - +0.4
955,945 - +0.5
955,945 - -0.1
955,945 - -0.8
955,945 - +0.6
955,945 - -1.2
955,945 - -0.5
956,144 + -1.9
956,144 + +1.0
956,291 + ABZR87_RS04570 0.21 -0.6
956,395 + ABZR87_RS04570 0.30 -1.1
956,396 - ABZR87_RS04570 0.31 -0.0
956,447 + ABZR87_RS04570 0.35 +0.2
956,447 + ABZR87_RS04570 0.35 +0.3
956,448 - ABZR87_RS04570 0.35 -0.1
956,459 + ABZR87_RS04570 0.36 +0.2
956,459 + ABZR87_RS04570 0.36 -1.2
956,460 - ABZR87_RS04570 0.36 -2.4
956,496 - ABZR87_RS04570 0.39 -1.5
956,531 + ABZR87_RS04570 0.43 +1.4
956,531 + ABZR87_RS04570 0.43 +0.5
956,532 - ABZR87_RS04570 0.43 +0.5
956,532 - ABZR87_RS04570 0.43 -0.1
956,540 - ABZR87_RS04570 0.43 -0.2
956,619 - ABZR87_RS04570 0.50 -0.6
956,681 + ABZR87_RS04570 0.56 +0.2
956,681 + ABZR87_RS04570 0.56 -0.3
956,681 + ABZR87_RS04570 0.56 -1.9
956,682 - ABZR87_RS04570 0.56 -2.6
956,682 - ABZR87_RS04570 0.56 +1.2
956,682 - ABZR87_RS04570 0.56 +1.2
956,682 - ABZR87_RS04570 0.56 +0.6
956,682 - ABZR87_RS04570 0.56 -0.1
956,753 + ABZR87_RS04570 0.62 +0.7
956,754 - ABZR87_RS04570 0.62 -0.3

Or see this region's nucleotide sequence