Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04550 and ABZR87_RS04555 are separated by 76 nucleotides ABZR87_RS04555 and ABZR87_RS04560 are separated by 19 nucleotides ABZR87_RS04560 and ABZR87_RS04565 are separated by 23 nucleotides ABZR87_RS04565 and ABZR87_RS04570 are separated by 288 nucleotides
ABZR87_RS04550: ABZR87_RS04550 - MFS transporter, at 952,249 to 953,715
_RS04550
ABZR87_RS04555: ABZR87_RS04555 - helix-turn-helix transcriptional regulator, at 953,792 to 954,685
_RS04555
ABZR87_RS04560: ABZR87_RS04560 - hydrolase, at 954,705 to 955,304
_RS04560
ABZR87_RS04565: ABZR87_RS04565 - PaaI family thioesterase, at 955,328 to 955,762
_RS04565
ABZR87_RS04570: ABZR87_RS04570 - porin, at 956,051 to 957,178
_RS04570
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1
2 at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.777 kb on + strand at 953.778 kb on - strand at 953.778 kb on - strand at 953.778 kb on - strand at 953.783 kb on + strand at 953.788 kb on + strand at 953.788 kb on + strand at 953.788 kb on + strand at 953.788 kb on + strand at 953.789 kb on - strand at 953.789 kb on - strand at 953.830 kb on + strand at 953.830 kb on + strand at 953.830 kb on + strand at 953.830 kb on + strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.834 kb on - strand at 954.016 kb on + strand, within ABZR87_RS04555 at 954.016 kb on + strand, within ABZR87_RS04555 at 954.016 kb on + strand, within ABZR87_RS04555 at 954.031 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.269 kb on + strand, within ABZR87_RS04555 at 954.270 kb on - strand, within ABZR87_RS04555 at 954.270 kb on - strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.374 kb on + strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.523 kb on + strand, within ABZR87_RS04555 at 954.611 kb on + strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.765 kb on + strand, within ABZR87_RS04560 at 954.765 kb on + strand, within ABZR87_RS04560 at 954.765 kb on + strand, within ABZR87_RS04560 at 954.766 kb on - strand, within ABZR87_RS04560 at 954.955 kb on + strand, within ABZR87_RS04560 at 954.956 kb on - strand, within ABZR87_RS04560 at 955.099 kb on + strand, within ABZR87_RS04560 at 955.099 kb on + strand, within ABZR87_RS04560 at 955.100 kb on - strand, within ABZR87_RS04560 at 955.100 kb on - strand, within ABZR87_RS04560 at 955.185 kb on + strand, within ABZR87_RS04560 at 955.186 kb on - strand, within ABZR87_RS04560 at 955.199 kb on + strand, within ABZR87_RS04560 at 955.200 kb on - strand, within ABZR87_RS04560 at 955.329 kb on + strand at 955.330 kb on - strand at 955.331 kb on - strand at 955.463 kb on + strand, within ABZR87_RS04565 at 955.509 kb on + strand, within ABZR87_RS04565 at 955.531 kb on + strand, within ABZR87_RS04565 at 955.806 kb on - strand at 955.887 kb on + strand at 955.894 kb on + strand at 955.895 kb on - strand at 955.895 kb on - strand at 955.895 kb on - strand at 955.944 kb on + strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 956.144 kb on + strand at 956.144 kb on + strand at 956.291 kb on + strand, within ABZR87_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 953,748 + -0.1 953,748 + -0.5 953,748 + +0.9 953,748 + +0.4 953,748 + +0.3 953,748 + +0.3 953,749 - -0.1 953,749 - -1.4 953,749 - -1.2 953,749 - +0.2 953,777 + +0.5 953,778 - -0.8 953,778 - +0.2 953,778 - +0.6 953,783 + +0.3 953,788 + -0.0 953,788 + -0.3 953,788 + +1.3 953,788 + +0.2 953,789 - +1.6 953,789 - -0.1 953,830 + +0.5 953,830 + -0.2 953,830 + +0.1 953,830 + -0.6 953,831 - +0.1 953,831 - +0.3 953,831 - -0.0 953,831 - +0.6 953,831 - -0.0 953,831 - -0.3 953,834 - -0.0 954,016 + ABZR87_RS04555 0.25 +0.2 954,016 + ABZR87_RS04555 0.25 -0.1 954,016 + ABZR87_RS04555 0.25 -0.6 954,031 + ABZR87_RS04555 0.27 +0.2 954,032 + ABZR87_RS04555 0.27 +1.1 954,032 + ABZR87_RS04555 0.27 -2.6 954,032 + ABZR87_RS04555 0.27 +0.3 954,032 + ABZR87_RS04555 0.27 +0.1 954,032 + ABZR87_RS04555 0.27 +0.9 954,033 - ABZR87_RS04555 0.27 +0.2 954,033 - ABZR87_RS04555 0.27 +0.1 954,033 - ABZR87_RS04555 0.27 +0.9 954,033 - ABZR87_RS04555 0.27 +0.0 954,033 - ABZR87_RS04555 0.27 +0.4 954,269 + ABZR87_RS04555 0.53 +0.1 954,270 - ABZR87_RS04555 0.53 +0.2 954,270 - ABZR87_RS04555 0.53 -1.1 954,362 + ABZR87_RS04555 0.64 -0.6 954,362 + ABZR87_RS04555 0.64 -0.4 954,362 + ABZR87_RS04555 0.64 +0.2 954,362 + ABZR87_RS04555 0.64 +0.3 954,362 + ABZR87_RS04555 0.64 +0.4 954,362 + ABZR87_RS04555 0.64 -0.5 954,362 + ABZR87_RS04555 0.64 -0.4 954,362 + ABZR87_RS04555 0.64 -0.1 954,362 + ABZR87_RS04555 0.64 -0.5 954,362 + ABZR87_RS04555 0.64 +0.3 954,362 + ABZR87_RS04555 0.64 -0.2 954,362 + ABZR87_RS04555 0.64 -0.9 954,362 + ABZR87_RS04555 0.64 +0.4 954,362 + ABZR87_RS04555 0.64 -0.6 954,362 + ABZR87_RS04555 0.64 -0.6 954,363 - ABZR87_RS04555 0.64 -0.8 954,363 - ABZR87_RS04555 0.64 +0.1 954,363 - ABZR87_RS04555 0.64 -0.7 954,374 + ABZR87_RS04555 0.65 -0.1 954,375 - ABZR87_RS04555 0.65 +0.9 954,375 - ABZR87_RS04555 0.65 -0.9 954,375 - ABZR87_RS04555 0.65 +0.3 954,375 - ABZR87_RS04555 0.65 -0.6 954,523 + ABZR87_RS04555 0.82 +0.6 954,611 + +0.1 954,612 - -0.9 954,612 - +0.4 954,612 - -0.3 954,612 - -0.1 954,659 + -0.0 954,659 + +1.6 954,659 + +0.2 954,659 + +0.2 954,659 + -0.4 954,659 + +1.1 954,660 - +0.1 954,660 - +0.7 954,660 - -0.0 954,660 - +0.0 954,765 + ABZR87_RS04560 0.10 +0.1 954,765 + ABZR87_RS04560 0.10 -1.8 954,765 + ABZR87_RS04560 0.10 +0.5 954,766 - ABZR87_RS04560 0.10 +0.1 954,955 + ABZR87_RS04560 0.42 -0.1 954,956 - ABZR87_RS04560 0.42 -0.4 955,099 + ABZR87_RS04560 0.66 +0.0 955,099 + ABZR87_RS04560 0.66 +0.4 955,100 - ABZR87_RS04560 0.66 -0.5 955,100 - ABZR87_RS04560 0.66 -0.5 955,185 + ABZR87_RS04560 0.80 -0.9 955,186 - ABZR87_RS04560 0.80 +0.2 955,199 + ABZR87_RS04560 0.82 -0.1 955,200 - ABZR87_RS04560 0.82 +0.1 955,329 + +0.3 955,330 - +0.6 955,331 - -0.3 955,463 + ABZR87_RS04565 0.31 -0.9 955,509 + ABZR87_RS04565 0.42 -0.9 955,531 + ABZR87_RS04565 0.47 -0.3 955,806 - +0.2 955,887 + -0.1 955,894 + +0.2 955,895 - +0.9 955,895 - +0.5 955,895 - +0.3 955,944 + +2.2 955,945 - +0.4 955,945 - +0.5 955,945 - -0.1 955,945 - -0.8 955,945 - +0.6 955,945 - -1.2 955,945 - -0.5 956,144 + -1.9 956,144 + +1.0 956,291 + ABZR87_RS04570 0.21 -0.6
Or see this region's nucleotide sequence