Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04550

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04540 and ABZR87_RS04545 are separated by 9 nucleotidesABZR87_RS04545 and ABZR87_RS04550 are separated by 122 nucleotidesABZR87_RS04550 and ABZR87_RS04555 are separated by 76 nucleotidesABZR87_RS04555 and ABZR87_RS04560 are separated by 19 nucleotides ABZR87_RS04540: ABZR87_RS04540 - response regulator transcription factor, at 950,690 to 951,337 _RS04540 ABZR87_RS04545: ABZR87_RS04545 - aquaporin, at 951,347 to 952,126 _RS04545 ABZR87_RS04550: ABZR87_RS04550 - MFS transporter, at 952,249 to 953,715 _RS04550 ABZR87_RS04555: ABZR87_RS04555 - helix-turn-helix transcriptional regulator, at 953,792 to 954,685 _RS04555 ABZR87_RS04560: ABZR87_RS04560 - hydrolase, at 954,705 to 955,304 _RS04560 Position (kb) 952 953 954Strain fitness (log2 ratio) -2 -1 0 1at 951.302 kb on + strandat 951.302 kb on + strandat 951.303 kb on - strandat 951.303 kb on - strandat 951.335 kb on + strandat 951.489 kb on + strand, within ABZR87_RS04545at 951.489 kb on + strand, within ABZR87_RS04545at 951.489 kb on + strand, within ABZR87_RS04545at 951.490 kb on - strand, within ABZR87_RS04545at 951.490 kb on - strand, within ABZR87_RS04545at 951.490 kb on - strand, within ABZR87_RS04545at 951.490 kb on - strand, within ABZR87_RS04545at 951.490 kb on - strand, within ABZR87_RS04545at 951.604 kb on + strand, within ABZR87_RS04545at 951.605 kb on - strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.607 kb on - strand, within ABZR87_RS04545at 951.814 kb on - strand, within ABZR87_RS04545at 951.814 kb on - strand, within ABZR87_RS04545at 951.814 kb on - strand, within ABZR87_RS04545at 951.953 kb on + strand, within ABZR87_RS04545at 952.246 kb on - strandat 952.246 kb on - strandat 952.246 kb on - strandat 952.412 kb on + strand, within ABZR87_RS04550at 952.413 kb on - strand, within ABZR87_RS04550at 952.413 kb on - strand, within ABZR87_RS04550at 952.413 kb on - strand, within ABZR87_RS04550at 952.413 kb on - strand, within ABZR87_RS04550at 952.413 kb on - strand, within ABZR87_RS04550at 952.464 kb on + strand, within ABZR87_RS04550at 952.464 kb on + strand, within ABZR87_RS04550at 952.497 kb on + strand, within ABZR87_RS04550at 952.498 kb on - strand, within ABZR87_RS04550at 952.498 kb on - strand, within ABZR87_RS04550at 952.498 kb on - strand, within ABZR87_RS04550at 952.498 kb on - strand, within ABZR87_RS04550at 952.562 kb on + strand, within ABZR87_RS04550at 952.678 kb on + strand, within ABZR87_RS04550at 952.808 kb on + strand, within ABZR87_RS04550at 952.808 kb on + strand, within ABZR87_RS04550at 952.808 kb on + strand, within ABZR87_RS04550at 952.808 kb on + strand, within ABZR87_RS04550at 952.809 kb on - strand, within ABZR87_RS04550at 952.809 kb on - strand, within ABZR87_RS04550at 952.847 kb on + strand, within ABZR87_RS04550at 952.847 kb on + strand, within ABZR87_RS04550at 952.847 kb on + strand, within ABZR87_RS04550at 952.848 kb on - strand, within ABZR87_RS04550at 952.848 kb on - strand, within ABZR87_RS04550at 952.848 kb on - strand, within ABZR87_RS04550at 953.093 kb on - strand, within ABZR87_RS04550at 953.236 kb on + strand, within ABZR87_RS04550at 953.236 kb on + strand, within ABZR87_RS04550at 953.236 kb on + strand, within ABZR87_RS04550at 953.439 kb on + strand, within ABZR87_RS04550at 953.506 kb on - strand, within ABZR87_RS04550at 953.522 kb on + strand, within ABZR87_RS04550at 953.522 kb on + strand, within ABZR87_RS04550at 953.534 kb on + strand, within ABZR87_RS04550at 953.534 kb on + strand, within ABZR87_RS04550at 953.534 kb on + strand, within ABZR87_RS04550at 953.535 kb on - strand, within ABZR87_RS04550at 953.535 kb on - strand, within ABZR87_RS04550at 953.748 kb on + strandat 953.748 kb on + strandat 953.748 kb on + strandat 953.748 kb on + strandat 953.748 kb on + strandat 953.748 kb on + strandat 953.749 kb on - strandat 953.749 kb on - strandat 953.749 kb on - strandat 953.749 kb on - strandat 953.777 kb on + strandat 953.778 kb on - strandat 953.778 kb on - strandat 953.778 kb on - strandat 953.783 kb on + strandat 953.788 kb on + strandat 953.788 kb on + strandat 953.788 kb on + strandat 953.788 kb on + strandat 953.789 kb on - strandat 953.789 kb on - strandat 953.830 kb on + strandat 953.830 kb on + strandat 953.830 kb on + strandat 953.830 kb on + strandat 953.831 kb on - strandat 953.831 kb on - strandat 953.831 kb on - strandat 953.831 kb on - strandat 953.831 kb on - strandat 953.831 kb on - strandat 953.834 kb on - strandat 954.016 kb on + strand, within ABZR87_RS04555at 954.016 kb on + strand, within ABZR87_RS04555at 954.016 kb on + strand, within ABZR87_RS04555at 954.031 kb on + strand, within ABZR87_RS04555at 954.032 kb on + strand, within ABZR87_RS04555at 954.032 kb on + strand, within ABZR87_RS04555at 954.032 kb on + strand, within ABZR87_RS04555at 954.032 kb on + strand, within ABZR87_RS04555at 954.032 kb on + strand, within ABZR87_RS04555at 954.033 kb on - strand, within ABZR87_RS04555at 954.033 kb on - strand, within ABZR87_RS04555at 954.033 kb on - strand, within ABZR87_RS04555at 954.033 kb on - strand, within ABZR87_RS04555at 954.033 kb on - strand, within ABZR87_RS04555at 954.269 kb on + strand, within ABZR87_RS04555at 954.270 kb on - strand, within ABZR87_RS04555at 954.270 kb on - strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.362 kb on + strand, within ABZR87_RS04555at 954.363 kb on - strand, within ABZR87_RS04555at 954.363 kb on - strand, within ABZR87_RS04555at 954.363 kb on - strand, within ABZR87_RS04555at 954.374 kb on + strand, within ABZR87_RS04555at 954.375 kb on - strand, within ABZR87_RS04555at 954.375 kb on - strand, within ABZR87_RS04555at 954.375 kb on - strand, within ABZR87_RS04555at 954.375 kb on - strand, within ABZR87_RS04555at 954.523 kb on + strand, within ABZR87_RS04555at 954.611 kb on + strandat 954.612 kb on - strandat 954.612 kb on - strandat 954.612 kb on - strandat 954.612 kb on - strandat 954.659 kb on + strandat 954.659 kb on + strandat 954.659 kb on + strandat 954.659 kb on + strandat 954.659 kb on + strandat 954.659 kb on + strandat 954.660 kb on - strandat 954.660 kb on - strandat 954.660 kb on - strandat 954.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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951,302 + +0.3
951,302 + +0.6
951,303 - +0.9
951,303 - -0.0
951,335 + -0.4
951,489 + ABZR87_RS04545 0.18 +0.6
951,489 + ABZR87_RS04545 0.18 -1.4
951,489 + ABZR87_RS04545 0.18 -0.2
951,490 - ABZR87_RS04545 0.18 +0.3
951,490 - ABZR87_RS04545 0.18 +0.1
951,490 - ABZR87_RS04545 0.18 -0.3
951,490 - ABZR87_RS04545 0.18 -0.8
951,490 - ABZR87_RS04545 0.18 +0.4
951,604 + ABZR87_RS04545 0.33 +0.4
951,605 - ABZR87_RS04545 0.33 +0.9
951,606 + ABZR87_RS04545 0.33 +0.6
951,606 + ABZR87_RS04545 0.33 +0.5
951,606 + ABZR87_RS04545 0.33 +0.3
951,606 + ABZR87_RS04545 0.33 +0.4
951,606 + ABZR87_RS04545 0.33 -0.4
951,606 + ABZR87_RS04545 0.33 +0.3
951,607 - ABZR87_RS04545 0.33 +0.1
951,814 - ABZR87_RS04545 0.60 +0.4
951,814 - ABZR87_RS04545 0.60 +0.3
951,814 - ABZR87_RS04545 0.60 +0.2
951,953 + ABZR87_RS04545 0.78 -0.7
952,246 - -0.9
952,246 - -0.4
952,246 - +0.3
952,412 + ABZR87_RS04550 0.11 +1.3
952,413 - ABZR87_RS04550 0.11 +0.1
952,413 - ABZR87_RS04550 0.11 -1.6
952,413 - ABZR87_RS04550 0.11 -1.5
952,413 - ABZR87_RS04550 0.11 -0.2
952,413 - ABZR87_RS04550 0.11 +0.4
952,464 + ABZR87_RS04550 0.15 +0.3
952,464 + ABZR87_RS04550 0.15 -0.2
952,497 + ABZR87_RS04550 0.17 +0.1
952,498 - ABZR87_RS04550 0.17 +0.4
952,498 - ABZR87_RS04550 0.17 -1.5
952,498 - ABZR87_RS04550 0.17 +0.3
952,498 - ABZR87_RS04550 0.17 -0.6
952,562 + ABZR87_RS04550 0.21 +1.0
952,678 + ABZR87_RS04550 0.29 -0.5
952,808 + ABZR87_RS04550 0.38 +0.4
952,808 + ABZR87_RS04550 0.38 +0.1
952,808 + ABZR87_RS04550 0.38 -0.2
952,808 + ABZR87_RS04550 0.38 +1.0
952,809 - ABZR87_RS04550 0.38 +0.3
952,809 - ABZR87_RS04550 0.38 -0.3
952,847 + ABZR87_RS04550 0.41 +0.3
952,847 + ABZR87_RS04550 0.41 +0.1
952,847 + ABZR87_RS04550 0.41 -0.7
952,848 - ABZR87_RS04550 0.41 -0.5
952,848 - ABZR87_RS04550 0.41 -0.5
952,848 - ABZR87_RS04550 0.41 -1.8
953,093 - ABZR87_RS04550 0.58 +0.3
953,236 + ABZR87_RS04550 0.67 -0.5
953,236 + ABZR87_RS04550 0.67 -0.1
953,236 + ABZR87_RS04550 0.67 +0.7
953,439 + ABZR87_RS04550 0.81 -0.6
953,506 - ABZR87_RS04550 0.86 -0.4
953,522 + ABZR87_RS04550 0.87 +1.0
953,522 + ABZR87_RS04550 0.87 -0.4
953,534 + ABZR87_RS04550 0.88 -0.5
953,534 + ABZR87_RS04550 0.88 -1.1
953,534 + ABZR87_RS04550 0.88 -0.5
953,535 - ABZR87_RS04550 0.88 +0.1
953,535 - ABZR87_RS04550 0.88 -0.1
953,748 + -0.1
953,748 + -0.5
953,748 + +0.9
953,748 + +0.4
953,748 + +0.3
953,748 + +0.3
953,749 - -0.1
953,749 - -1.4
953,749 - -1.2
953,749 - +0.2
953,777 + +0.5
953,778 - -0.8
953,778 - +0.2
953,778 - +0.6
953,783 + +0.3
953,788 + -0.0
953,788 + -0.3
953,788 + +1.3
953,788 + +0.2
953,789 - +1.6
953,789 - -0.1
953,830 + +0.5
953,830 + -0.2
953,830 + +0.1
953,830 + -0.6
953,831 - +0.1
953,831 - +0.3
953,831 - -0.0
953,831 - +0.6
953,831 - -0.0
953,831 - -0.3
953,834 - -0.0
954,016 + ABZR87_RS04555 0.25 +0.2
954,016 + ABZR87_RS04555 0.25 -0.1
954,016 + ABZR87_RS04555 0.25 -0.6
954,031 + ABZR87_RS04555 0.27 +0.2
954,032 + ABZR87_RS04555 0.27 +1.1
954,032 + ABZR87_RS04555 0.27 -2.6
954,032 + ABZR87_RS04555 0.27 +0.3
954,032 + ABZR87_RS04555 0.27 +0.1
954,032 + ABZR87_RS04555 0.27 +0.9
954,033 - ABZR87_RS04555 0.27 +0.2
954,033 - ABZR87_RS04555 0.27 +0.1
954,033 - ABZR87_RS04555 0.27 +0.9
954,033 - ABZR87_RS04555 0.27 +0.0
954,033 - ABZR87_RS04555 0.27 +0.4
954,269 + ABZR87_RS04555 0.53 +0.1
954,270 - ABZR87_RS04555 0.53 +0.2
954,270 - ABZR87_RS04555 0.53 -1.1
954,362 + ABZR87_RS04555 0.64 -0.6
954,362 + ABZR87_RS04555 0.64 -0.4
954,362 + ABZR87_RS04555 0.64 +0.2
954,362 + ABZR87_RS04555 0.64 +0.3
954,362 + ABZR87_RS04555 0.64 +0.4
954,362 + ABZR87_RS04555 0.64 -0.5
954,362 + ABZR87_RS04555 0.64 -0.4
954,362 + ABZR87_RS04555 0.64 -0.1
954,362 + ABZR87_RS04555 0.64 -0.5
954,362 + ABZR87_RS04555 0.64 +0.3
954,362 + ABZR87_RS04555 0.64 -0.2
954,362 + ABZR87_RS04555 0.64 -0.9
954,362 + ABZR87_RS04555 0.64 +0.4
954,362 + ABZR87_RS04555 0.64 -0.6
954,362 + ABZR87_RS04555 0.64 -0.6
954,363 - ABZR87_RS04555 0.64 -0.8
954,363 - ABZR87_RS04555 0.64 +0.1
954,363 - ABZR87_RS04555 0.64 -0.7
954,374 + ABZR87_RS04555 0.65 -0.1
954,375 - ABZR87_RS04555 0.65 +0.9
954,375 - ABZR87_RS04555 0.65 -0.9
954,375 - ABZR87_RS04555 0.65 +0.3
954,375 - ABZR87_RS04555 0.65 -0.6
954,523 + ABZR87_RS04555 0.82 +0.6
954,611 + +0.1
954,612 - -0.9
954,612 - +0.4
954,612 - -0.3
954,612 - -0.1
954,659 + -0.0
954,659 + +1.6
954,659 + +0.2
954,659 + +0.2
954,659 + -0.4
954,659 + +1.1
954,660 - +0.1
954,660 - +0.7
954,660 - -0.0
954,660 - +0.0

Or see this region's nucleotide sequence