Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03675 and ABZR87_RS03680 are separated by 136 nucleotides ABZR87_RS03680 and ABZR87_RS03685 are separated by 198 nucleotides ABZR87_RS03685 and ABZR87_RS03690 are separated by 182 nucleotides ABZR87_RS03690 and ABZR87_RS03695 are separated by 159 nucleotides
ABZR87_RS03675: ABZR87_RS03675 - alpha/beta hydrolase, at 766,504 to 767,523
_RS03675
ABZR87_RS03680: ABZR87_RS03680 - DUF1330 domain-containing protein, at 767,660 to 767,914
_RS03680
ABZR87_RS03685: ABZR87_RS03685 - PASTA domain-containing protein, at 768,113 to 769,072
_RS03685
ABZR87_RS03690: ABZR87_RS03690 - DUF305 domain-containing protein, at 769,255 to 769,770
_RS03690
ABZR87_RS03695: ABZR87_RS03695 - carboxymuconolactone decarboxylase family protein, at 769,930 to 770,262
_RS03695
Position (kb) 768
769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 767.167 kb on + strand, within ABZR87_RS03675 at 767.230 kb on + strand, within ABZR87_RS03675 at 767.230 kb on + strand, within ABZR87_RS03675 at 767.231 kb on - strand, within ABZR87_RS03675 at 767.231 kb on - strand, within ABZR87_RS03675 at 767.263 kb on + strand, within ABZR87_RS03675 at 767.263 kb on + strand, within ABZR87_RS03675 at 767.263 kb on + strand, within ABZR87_RS03675 at 767.263 kb on + strand, within ABZR87_RS03675 at 767.263 kb on + strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.326 kb on - strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.366 kb on - strand, within ABZR87_RS03675 at 767.366 kb on - strand, within ABZR87_RS03675 at 767.366 kb on - strand, within ABZR87_RS03675 at 767.413 kb on + strand, within ABZR87_RS03675 at 767.413 kb on + strand, within ABZR87_RS03675 at 767.414 kb on - strand, within ABZR87_RS03675 at 767.414 kb on - strand, within ABZR87_RS03675 at 767.414 kb on - strand, within ABZR87_RS03675 at 767.521 kb on + strand at 767.521 kb on + strand at 767.521 kb on + strand at 767.522 kb on - strand at 767.573 kb on + strand at 767.573 kb on + strand at 767.573 kb on + strand at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.745 kb on + strand, within ABZR87_RS03680 at 767.745 kb on + strand, within ABZR87_RS03680 at 767.745 kb on + strand, within ABZR87_RS03680 at 768.001 kb on + strand at 768.001 kb on + strand at 768.001 kb on + strand at 768.001 kb on + strand at 768.002 kb on - strand at 768.002 kb on - strand at 768.002 kb on - strand at 768.013 kb on + strand at 768.013 kb on + strand at 768.014 kb on - strand at 768.014 kb on - strand at 768.022 kb on + strand at 768.023 kb on - strand at 768.058 kb on + strand at 768.058 kb on + strand at 768.059 kb on - strand at 768.088 kb on + strand at 768.088 kb on + strand at 768.088 kb on + strand at 768.088 kb on + strand at 768.089 kb on - strand at 768.089 kb on - strand at 768.092 kb on - strand at 768.092 kb on - strand at 768.202 kb on + strand at 768.202 kb on + strand at 768.202 kb on + strand at 768.202 kb on + strand at 768.202 kb on + strand at 768.203 kb on - strand at 768.203 kb on - strand at 768.203 kb on - strand at 768.203 kb on - strand at 768.203 kb on - strand at 768.499 kb on - strand, within ABZR87_RS03685 at 768.499 kb on - strand, within ABZR87_RS03685 at 768.585 kb on + strand, within ABZR87_RS03685 at 768.586 kb on - strand, within ABZR87_RS03685 at 768.586 kb on - strand, within ABZR87_RS03685 at 768.586 kb on - strand, within ABZR87_RS03685 at 768.586 kb on - strand, within ABZR87_RS03685 at 768.586 kb on - strand, within ABZR87_RS03685 at 768.624 kb on - strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.819 kb on - strand, within ABZR87_RS03685 at 768.876 kb on + strand, within ABZR87_RS03685 at 768.876 kb on + strand, within ABZR87_RS03685 at 768.876 kb on + strand, within ABZR87_RS03685 at 768.876 kb on + strand, within ABZR87_RS03685 at 768.968 kb on + strand, within ABZR87_RS03685 at 768.968 kb on + strand, within ABZR87_RS03685 at 768.968 kb on + strand, within ABZR87_RS03685 at 768.969 kb on - strand, within ABZR87_RS03685 at 768.969 kb on - strand, within ABZR87_RS03685 at 768.984 kb on - strand at 768.984 kb on - strand at 768.984 kb on - strand at 769.053 kb on - strand at 769.109 kb on + strand at 769.110 kb on - strand at 769.127 kb on + strand at 769.127 kb on + strand at 769.128 kb on - strand at 769.128 kb on - strand at 769.128 kb on - strand at 769.200 kb on + strand at 769.201 kb on - strand at 769.292 kb on + strand at 769.292 kb on + strand at 769.293 kb on - strand at 769.411 kb on + strand, within ABZR87_RS03690 at 769.411 kb on + strand, within ABZR87_RS03690 at 769.412 kb on - strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.426 kb on - strand, within ABZR87_RS03690 at 769.426 kb on - strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.488 kb on - strand, within ABZR87_RS03690 at 769.488 kb on - strand, within ABZR87_RS03690 at 769.488 kb on - strand, within ABZR87_RS03690 at 769.592 kb on + strand, within ABZR87_RS03690 at 769.592 kb on + strand, within ABZR87_RS03690 at 769.592 kb on + strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.675 kb on + strand, within ABZR87_RS03690 at 769.675 kb on + strand, within ABZR87_RS03690 at 769.676 kb on - strand, within ABZR87_RS03690 at 769.695 kb on - strand, within ABZR87_RS03690 at 769.695 kb on - strand, within ABZR87_RS03690 at 769.706 kb on + strand, within ABZR87_RS03690 at 769.706 kb on + strand, within ABZR87_RS03690 at 769.707 kb on - strand, within ABZR87_RS03690 at 769.707 kb on - strand, within ABZR87_RS03690 at 769.707 kb on - strand, within ABZR87_RS03690 at 769.763 kb on + strand at 769.763 kb on + strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.852 kb on + strand at 769.853 kb on - strand at 769.853 kb on - strand at 769.853 kb on - strand at 769.853 kb on - strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 770.034 kb on + strand, within ABZR87_RS03695 at 770.062 kb on - strand, within ABZR87_RS03695 at 770.062 kb on - strand, within ABZR87_RS03695 at 770.062 kb on - strand, within ABZR87_RS03695
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 767,167 + ABZR87_RS03675 0.65 -0.3 767,230 + ABZR87_RS03675 0.71 +0.2 767,230 + ABZR87_RS03675 0.71 +0.7 767,231 - ABZR87_RS03675 0.71 -0.2 767,231 - ABZR87_RS03675 0.71 -0.2 767,263 + ABZR87_RS03675 0.74 +0.9 767,263 + ABZR87_RS03675 0.74 -1.3 767,263 + ABZR87_RS03675 0.74 -0.5 767,263 + ABZR87_RS03675 0.74 -0.9 767,263 + ABZR87_RS03675 0.74 +1.3 767,264 - ABZR87_RS03675 0.75 -0.1 767,264 - ABZR87_RS03675 0.75 -0.7 767,264 - ABZR87_RS03675 0.75 +0.4 767,264 - ABZR87_RS03675 0.75 +2.7 767,264 - ABZR87_RS03675 0.75 -0.5 767,264 - ABZR87_RS03675 0.75 +0.6 767,264 - ABZR87_RS03675 0.75 +0.9 767,326 - ABZR87_RS03675 0.81 -0.4 767,365 + ABZR87_RS03675 0.84 +0.7 767,365 + ABZR87_RS03675 0.84 +0.2 767,365 + ABZR87_RS03675 0.84 -0.5 767,365 + ABZR87_RS03675 0.84 -0.5 767,365 + ABZR87_RS03675 0.84 +0.4 767,365 + ABZR87_RS03675 0.84 +0.2 767,365 + ABZR87_RS03675 0.84 -0.1 767,366 - ABZR87_RS03675 0.85 +0.3 767,366 - ABZR87_RS03675 0.85 -0.4 767,366 - ABZR87_RS03675 0.85 +0.1 767,413 + ABZR87_RS03675 0.89 +0.1 767,413 + ABZR87_RS03675 0.89 +0.3 767,414 - ABZR87_RS03675 0.89 +0.2 767,414 - ABZR87_RS03675 0.89 -0.2 767,414 - ABZR87_RS03675 0.89 +0.4 767,521 + +0.5 767,521 + +0.2 767,521 + +0.0 767,522 - -0.5 767,573 + -0.0 767,573 + -0.2 767,573 + +0.5 767,730 + ABZR87_RS03680 0.27 -1.1 767,730 + ABZR87_RS03680 0.27 +0.5 767,730 + ABZR87_RS03680 0.27 +0.1 767,730 + ABZR87_RS03680 0.27 -0.2 767,730 + ABZR87_RS03680 0.27 -0.2 767,730 + ABZR87_RS03680 0.27 -0.3 767,730 + ABZR87_RS03680 0.27 +1.0 767,731 - ABZR87_RS03680 0.28 -0.4 767,731 - ABZR87_RS03680 0.28 -0.9 767,731 - ABZR87_RS03680 0.28 +0.5 767,731 - ABZR87_RS03680 0.28 +0.0 767,731 - ABZR87_RS03680 0.28 -0.1 767,731 - ABZR87_RS03680 0.28 +0.8 767,731 - ABZR87_RS03680 0.28 -0.5 767,745 + ABZR87_RS03680 0.33 -0.7 767,745 + ABZR87_RS03680 0.33 -0.1 767,745 + ABZR87_RS03680 0.33 +0.0 768,001 + +2.2 768,001 + -1.4 768,001 + +0.3 768,001 + -0.0 768,002 - +0.9 768,002 - +0.1 768,002 - -0.2 768,013 + +0.4 768,013 + -0.4 768,014 - +0.2 768,014 - +0.1 768,022 + -0.8 768,023 - -1.6 768,058 + +0.8 768,058 + -0.1 768,059 - -1.5 768,088 + +0.2 768,088 + +0.8 768,088 + -0.5 768,088 + +0.9 768,089 - +0.4 768,089 - -0.4 768,092 - +1.4 768,092 - +0.1 768,202 + +0.7 768,202 + -0.5 768,202 + +0.7 768,202 + +0.6 768,202 + +0.9 768,203 - -0.8 768,203 - +0.5 768,203 - -0.0 768,203 - -1.1 768,203 - -0.6 768,499 - ABZR87_RS03685 0.40 -0.3 768,499 - ABZR87_RS03685 0.40 -0.1 768,585 + ABZR87_RS03685 0.49 -0.2 768,586 - ABZR87_RS03685 0.49 +0.3 768,586 - ABZR87_RS03685 0.49 -0.9 768,586 - ABZR87_RS03685 0.49 -0.3 768,586 - ABZR87_RS03685 0.49 -2.0 768,586 - ABZR87_RS03685 0.49 -0.3 768,624 - ABZR87_RS03685 0.53 +1.1 768,818 + ABZR87_RS03685 0.73 +0.8 768,818 + ABZR87_RS03685 0.73 +0.4 768,818 + ABZR87_RS03685 0.73 -0.6 768,818 + ABZR87_RS03685 0.73 -0.4 768,818 + ABZR87_RS03685 0.73 -0.9 768,818 + ABZR87_RS03685 0.73 +0.1 768,819 - ABZR87_RS03685 0.74 +1.5 768,876 + ABZR87_RS03685 0.79 +0.1 768,876 + ABZR87_RS03685 0.79 +0.4 768,876 + ABZR87_RS03685 0.79 +0.1 768,876 + ABZR87_RS03685 0.79 -1.4 768,968 + ABZR87_RS03685 0.89 -1.1 768,968 + ABZR87_RS03685 0.89 -0.1 768,968 + ABZR87_RS03685 0.89 -0.4 768,969 - ABZR87_RS03685 0.89 -0.4 768,969 - ABZR87_RS03685 0.89 +0.8 768,984 - -0.0 768,984 - -0.3 768,984 - -0.5 769,053 - +0.1 769,109 + -0.1 769,110 - -0.2 769,127 + -0.1 769,127 + +0.4 769,128 - +1.7 769,128 - -1.3 769,128 - +0.4 769,200 + +0.2 769,201 - +0.3 769,292 + +1.0 769,292 + +0.1 769,293 - +0.1 769,411 + ABZR87_RS03690 0.30 -1.2 769,411 + ABZR87_RS03690 0.30 +0.1 769,412 - ABZR87_RS03690 0.30 +2.9 769,425 + ABZR87_RS03690 0.33 -0.2 769,425 + ABZR87_RS03690 0.33 -0.3 769,425 + ABZR87_RS03690 0.33 +0.2 769,425 + ABZR87_RS03690 0.33 +1.1 769,426 - ABZR87_RS03690 0.33 -0.2 769,426 - ABZR87_RS03690 0.33 -0.5 769,487 + ABZR87_RS03690 0.45 +0.4 769,487 + ABZR87_RS03690 0.45 +0.4 769,487 + ABZR87_RS03690 0.45 +0.4 769,487 + ABZR87_RS03690 0.45 -1.2 769,487 + ABZR87_RS03690 0.45 +0.6 769,487 + ABZR87_RS03690 0.45 +0.5 769,487 + ABZR87_RS03690 0.45 +0.2 769,488 - ABZR87_RS03690 0.45 +0.7 769,488 - ABZR87_RS03690 0.45 +0.0 769,488 - ABZR87_RS03690 0.45 -0.1 769,592 + ABZR87_RS03690 0.65 -0.5 769,592 + ABZR87_RS03690 0.65 -0.6 769,592 + ABZR87_RS03690 0.65 +0.7 769,593 - ABZR87_RS03690 0.66 -0.0 769,593 - ABZR87_RS03690 0.66 -0.0 769,593 - ABZR87_RS03690 0.66 -0.1 769,593 - ABZR87_RS03690 0.66 +1.0 769,593 - ABZR87_RS03690 0.66 +1.4 769,593 - ABZR87_RS03690 0.66 -0.1 769,593 - ABZR87_RS03690 0.66 -0.0 769,675 + ABZR87_RS03690 0.81 +0.6 769,675 + ABZR87_RS03690 0.81 -0.2 769,676 - ABZR87_RS03690 0.82 +0.4 769,695 - ABZR87_RS03690 0.85 -1.1 769,695 - ABZR87_RS03690 0.85 -0.6 769,706 + ABZR87_RS03690 0.87 +0.2 769,706 + ABZR87_RS03690 0.87 +1.0 769,707 - ABZR87_RS03690 0.88 +0.1 769,707 - ABZR87_RS03690 0.88 -1.4 769,707 - ABZR87_RS03690 0.88 -0.2 769,763 + +0.3 769,763 + +0.3 769,764 - -0.7 769,764 - +0.7 769,764 - +0.1 769,764 - +0.2 769,764 - -2.9 769,764 - -0.3 769,852 + +0.6 769,853 - +0.3 769,853 - -0.3 769,853 - -0.1 769,853 - -0.1 769,931 + -0.7 769,931 + -0.5 769,931 + -0.2 769,931 + -0.0 769,931 + +0.5 769,931 + -0.3 769,931 + -0.7 769,931 + +2.0 769,931 + -0.3 769,931 + -0.4 769,931 + +0.8 769,931 + +0.1 769,931 + -1.0 769,932 - +1.0 769,932 - -0.6 769,932 - +0.0 769,932 - -0.2 769,932 - -0.2 769,932 - -1.9 769,932 - -0.5 769,932 - +0.2 770,034 + ABZR87_RS03695 0.31 -0.2 770,062 - ABZR87_RS03695 0.40 -0.7 770,062 - ABZR87_RS03695 0.40 +0.3 770,062 - ABZR87_RS03695 0.40 -0.5
Or see this region's nucleotide sequence