Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03295

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03290 and ABZR87_RS03295 overlap by 4 nucleotidesABZR87_RS03295 and ABZR87_RS03300 are separated by 9 nucleotidesABZR87_RS03300 and ABZR87_RS03305 are separated by 162 nucleotides ABZR87_RS03290: ABZR87_RS03290 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 692,597 to 694,795 _RS03290 ABZR87_RS03295: ABZR87_RS03295 - xanthine dehydrogenase family protein subunit M, at 694,792 to 695,814 _RS03295 ABZR87_RS03300: ABZR87_RS03300 - 2Fe-2S iron-sulfur cluster-binding protein, at 695,824 to 696,564 _RS03300 ABZR87_RS03305: ABZR87_RS03305 - M20/M25/M40 family metallo-hydrolase, at 696,727 to 698,037 _RS03305 Position (kb) 694 695 696Strain fitness (log2 ratio) -2 -1 0 1 2at 693.828 kb on + strand, within ABZR87_RS03290at 693.829 kb on - strand, within ABZR87_RS03290at 693.829 kb on - strand, within ABZR87_RS03290at 693.829 kb on - strand, within ABZR87_RS03290at 693.829 kb on - strand, within ABZR87_RS03290at 693.829 kb on - strand, within ABZR87_RS03290at 693.829 kb on - strand, within ABZR87_RS03290at 693.958 kb on + strand, within ABZR87_RS03290at 694.176 kb on + strand, within ABZR87_RS03290at 694.176 kb on + strand, within ABZR87_RS03290at 694.176 kb on + strand, within ABZR87_RS03290at 694.176 kb on + strand, within ABZR87_RS03290at 694.176 kb on + strand, within ABZR87_RS03290at 694.176 kb on + strand, within ABZR87_RS03290at 694.176 kb on + strand, within ABZR87_RS03290at 694.176 kb on + strand, within ABZR87_RS03290at 694.176 kb on + strand, within ABZR87_RS03290at 694.177 kb on - strand, within ABZR87_RS03290at 694.177 kb on - strand, within ABZR87_RS03290at 694.177 kb on - strand, within ABZR87_RS03290at 694.177 kb on - strand, within ABZR87_RS03290at 694.177 kb on - strand, within ABZR87_RS03290at 694.177 kb on - strand, within ABZR87_RS03290at 694.177 kb on - strand, within ABZR87_RS03290at 694.191 kb on + strand, within ABZR87_RS03290at 694.191 kb on + strand, within ABZR87_RS03290at 694.191 kb on + strand, within ABZR87_RS03290at 694.191 kb on + strand, within ABZR87_RS03290at 694.192 kb on - strand, within ABZR87_RS03290at 694.192 kb on - strand, within ABZR87_RS03290at 694.192 kb on - strand, within ABZR87_RS03290at 694.267 kb on + strand, within ABZR87_RS03290at 694.268 kb on - strand, within ABZR87_RS03290at 694.272 kb on + strand, within ABZR87_RS03290at 694.273 kb on - strand, within ABZR87_RS03290at 694.273 kb on - strand, within ABZR87_RS03290at 694.424 kb on + strand, within ABZR87_RS03290at 694.424 kb on + strand, within ABZR87_RS03290at 694.500 kb on + strand, within ABZR87_RS03290at 694.500 kb on + strand, within ABZR87_RS03290at 694.500 kb on + strand, within ABZR87_RS03290at 694.500 kb on + strand, within ABZR87_RS03290at 694.500 kb on + strand, within ABZR87_RS03290at 694.501 kb on - strand, within ABZR87_RS03290at 694.501 kb on - strand, within ABZR87_RS03290at 694.501 kb on - strand, within ABZR87_RS03290at 694.501 kb on - strand, within ABZR87_RS03290at 694.501 kb on - strand, within ABZR87_RS03290at 694.501 kb on - strand, within ABZR87_RS03290at 694.501 kb on - strand, within ABZR87_RS03290at 694.501 kb on - strand, within ABZR87_RS03290at 694.501 kb on - strand, within ABZR87_RS03290at 694.501 kb on - strand, within ABZR87_RS03290at 694.689 kb on - strandat 694.689 kb on - strandat 694.729 kb on - strandat 695.105 kb on + strand, within ABZR87_RS03295at 695.106 kb on - strand, within ABZR87_RS03295at 695.106 kb on - strand, within ABZR87_RS03295at 695.106 kb on - strand, within ABZR87_RS03295at 695.106 kb on - strand, within ABZR87_RS03295at 695.106 kb on - strand, within ABZR87_RS03295at 695.132 kb on + strand, within ABZR87_RS03295at 695.132 kb on + strand, within ABZR87_RS03295at 695.132 kb on + strand, within ABZR87_RS03295at 695.132 kb on + strand, within ABZR87_RS03295at 695.132 kb on + strand, within ABZR87_RS03295at 695.132 kb on + strand, within ABZR87_RS03295at 695.132 kb on + strand, within ABZR87_RS03295at 695.132 kb on + strand, within ABZR87_RS03295at 695.132 kb on + strand, within ABZR87_RS03295at 695.133 kb on - strand, within ABZR87_RS03295at 695.133 kb on - strand, within ABZR87_RS03295at 695.133 kb on - strand, within ABZR87_RS03295at 695.206 kb on - strand, within ABZR87_RS03295at 695.206 kb on - strand, within ABZR87_RS03295at 695.439 kb on - strand, within ABZR87_RS03295at 695.450 kb on + strand, within ABZR87_RS03295at 695.450 kb on + strand, within ABZR87_RS03295at 695.450 kb on + strand, within ABZR87_RS03295at 695.451 kb on - strand, within ABZR87_RS03295at 695.456 kb on + strand, within ABZR87_RS03295at 695.456 kb on + strand, within ABZR87_RS03295at 695.457 kb on - strand, within ABZR87_RS03295at 695.457 kb on - strand, within ABZR87_RS03295at 695.457 kb on - strand, within ABZR87_RS03295at 695.457 kb on - strand, within ABZR87_RS03295at 695.457 kb on - strand, within ABZR87_RS03295at 695.457 kb on - strand, within ABZR87_RS03295at 695.556 kb on - strand, within ABZR87_RS03295at 695.692 kb on + strand, within ABZR87_RS03295at 695.692 kb on + strand, within ABZR87_RS03295at 695.693 kb on - strand, within ABZR87_RS03295at 695.693 kb on - strand, within ABZR87_RS03295at 695.693 kb on - strand, within ABZR87_RS03295at 695.693 kb on - strand, within ABZR87_RS03295at 695.737 kb on - strandat 695.737 kb on - strandat 695.737 kb on - strandat 695.737 kb on - strandat 695.738 kb on + strandat 695.738 kb on + strandat 695.738 kb on + strandat 695.738 kb on + strandat 695.738 kb on + strandat 695.738 kb on + strandat 695.739 kb on - strandat 695.739 kb on - strandat 695.798 kb on + strandat 695.798 kb on + strandat 695.799 kb on - strandat 695.799 kb on - strandat 695.799 kb on - strandat 695.825 kb on + strandat 695.825 kb on + strandat 695.825 kb on + strandat 695.882 kb on + strandat 696.016 kb on + strand, within ABZR87_RS03300at 696.017 kb on - strand, within ABZR87_RS03300at 696.053 kb on + strand, within ABZR87_RS03300at 696.339 kb on - strand, within ABZR87_RS03300at 696.339 kb on - strand, within ABZR87_RS03300at 696.339 kb on - strand, within ABZR87_RS03300at 696.339 kb on - strand, within ABZR87_RS03300at 696.354 kb on + strand, within ABZR87_RS03300at 696.354 kb on + strand, within ABZR87_RS03300at 696.354 kb on + strand, within ABZR87_RS03300at 696.355 kb on - strand, within ABZR87_RS03300at 696.355 kb on - strand, within ABZR87_RS03300at 696.593 kb on + strandat 696.593 kb on + strandat 696.594 kb on - strandat 696.594 kb on - strandat 696.594 kb on - strandat 696.629 kb on + strandat 696.698 kb on + strandat 696.698 kb on + strandat 696.698 kb on + strandat 696.699 kb on - strandat 696.705 kb on + strandat 696.728 kb on + strandat 696.728 kb on + strandat 696.728 kb on + strandat 696.728 kb on + strandat 696.728 kb on + strandat 696.729 kb on - strandat 696.785 kb on + strandat 696.785 kb on + strandat 696.785 kb on + strandat 696.786 kb on - strandat 696.786 kb on - strandat 696.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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693,828 + ABZR87_RS03290 0.56 -0.1
693,829 - ABZR87_RS03290 0.56 -1.4
693,829 - ABZR87_RS03290 0.56 -0.5
693,829 - ABZR87_RS03290 0.56 +2.1
693,829 - ABZR87_RS03290 0.56 +1.2
693,829 - ABZR87_RS03290 0.56 +0.8
693,829 - ABZR87_RS03290 0.56 +0.2
693,958 + ABZR87_RS03290 0.62 -0.3
694,176 + ABZR87_RS03290 0.72 +0.7
694,176 + ABZR87_RS03290 0.72 -0.1
694,176 + ABZR87_RS03290 0.72 -0.1
694,176 + ABZR87_RS03290 0.72 +2.1
694,176 + ABZR87_RS03290 0.72 +0.4
694,176 + ABZR87_RS03290 0.72 -0.8
694,176 + ABZR87_RS03290 0.72 +0.6
694,176 + ABZR87_RS03290 0.72 +0.2
694,176 + ABZR87_RS03290 0.72 -1.0
694,177 - ABZR87_RS03290 0.72 +0.9
694,177 - ABZR87_RS03290 0.72 +1.8
694,177 - ABZR87_RS03290 0.72 +0.3
694,177 - ABZR87_RS03290 0.72 -0.3
694,177 - ABZR87_RS03290 0.72 -0.2
694,177 - ABZR87_RS03290 0.72 -0.1
694,177 - ABZR87_RS03290 0.72 +0.6
694,191 + ABZR87_RS03290 0.72 +0.2
694,191 + ABZR87_RS03290 0.72 +0.5
694,191 + ABZR87_RS03290 0.72 -0.3
694,191 + ABZR87_RS03290 0.72 +0.7
694,192 - ABZR87_RS03290 0.73 -0.4
694,192 - ABZR87_RS03290 0.73 -0.1
694,192 - ABZR87_RS03290 0.73 -0.6
694,267 + ABZR87_RS03290 0.76 -2.3
694,268 - ABZR87_RS03290 0.76 -0.9
694,272 + ABZR87_RS03290 0.76 +0.4
694,273 - ABZR87_RS03290 0.76 -0.6
694,273 - ABZR87_RS03290 0.76 -0.0
694,424 + ABZR87_RS03290 0.83 +0.6
694,424 + ABZR87_RS03290 0.83 -0.1
694,500 + ABZR87_RS03290 0.87 -0.4
694,500 + ABZR87_RS03290 0.87 -0.2
694,500 + ABZR87_RS03290 0.87 -0.9
694,500 + ABZR87_RS03290 0.87 -0.1
694,500 + ABZR87_RS03290 0.87 -0.4
694,501 - ABZR87_RS03290 0.87 -0.1
694,501 - ABZR87_RS03290 0.87 +0.0
694,501 - ABZR87_RS03290 0.87 +0.7
694,501 - ABZR87_RS03290 0.87 -0.0
694,501 - ABZR87_RS03290 0.87 -0.6
694,501 - ABZR87_RS03290 0.87 -0.2
694,501 - ABZR87_RS03290 0.87 -0.4
694,501 - ABZR87_RS03290 0.87 -2.7
694,501 - ABZR87_RS03290 0.87 +0.7
694,501 - ABZR87_RS03290 0.87 -1.1
694,689 - +0.0
694,689 - -1.0
694,729 - +0.9
695,105 + ABZR87_RS03295 0.31 -0.1
695,106 - ABZR87_RS03295 0.31 +0.2
695,106 - ABZR87_RS03295 0.31 -0.4
695,106 - ABZR87_RS03295 0.31 +0.5
695,106 - ABZR87_RS03295 0.31 +0.2
695,106 - ABZR87_RS03295 0.31 +0.0
695,132 + ABZR87_RS03295 0.33 -0.5
695,132 + ABZR87_RS03295 0.33 -0.3
695,132 + ABZR87_RS03295 0.33 -0.3
695,132 + ABZR87_RS03295 0.33 -0.6
695,132 + ABZR87_RS03295 0.33 +0.2
695,132 + ABZR87_RS03295 0.33 -0.1
695,132 + ABZR87_RS03295 0.33 +0.0
695,132 + ABZR87_RS03295 0.33 +0.3
695,132 + ABZR87_RS03295 0.33 +0.4
695,133 - ABZR87_RS03295 0.33 +0.2
695,133 - ABZR87_RS03295 0.33 +0.5
695,133 - ABZR87_RS03295 0.33 +0.1
695,206 - ABZR87_RS03295 0.40 -0.2
695,206 - ABZR87_RS03295 0.40 -0.4
695,439 - ABZR87_RS03295 0.63 -1.5
695,450 + ABZR87_RS03295 0.64 -0.3
695,450 + ABZR87_RS03295 0.64 +0.7
695,450 + ABZR87_RS03295 0.64 -1.4
695,451 - ABZR87_RS03295 0.64 +0.6
695,456 + ABZR87_RS03295 0.65 +0.2
695,456 + ABZR87_RS03295 0.65 +0.3
695,457 - ABZR87_RS03295 0.65 -0.9
695,457 - ABZR87_RS03295 0.65 +0.1
695,457 - ABZR87_RS03295 0.65 +0.2
695,457 - ABZR87_RS03295 0.65 +1.1
695,457 - ABZR87_RS03295 0.65 -0.0
695,457 - ABZR87_RS03295 0.65 +1.5
695,556 - ABZR87_RS03295 0.75 +0.1
695,692 + ABZR87_RS03295 0.88 +0.6
695,692 + ABZR87_RS03295 0.88 -1.0
695,693 - ABZR87_RS03295 0.88 +0.1
695,693 - ABZR87_RS03295 0.88 -0.6
695,693 - ABZR87_RS03295 0.88 +0.0
695,693 - ABZR87_RS03295 0.88 -0.0
695,737 - -0.1
695,737 - -0.3
695,737 - -1.0
695,737 - -0.7
695,738 + +0.5
695,738 + -0.1
695,738 + +0.1
695,738 + -0.3
695,738 + -0.3
695,738 + -1.4
695,739 - -0.8
695,739 - +0.8
695,798 + +0.0
695,798 + +0.4
695,799 - -2.3
695,799 - +0.1
695,799 - +2.7
695,825 + +0.0
695,825 + -0.8
695,825 + -0.6
695,882 + -0.6
696,016 + ABZR87_RS03300 0.26 -0.4
696,017 - ABZR87_RS03300 0.26 -0.7
696,053 + ABZR87_RS03300 0.31 -0.2
696,339 - ABZR87_RS03300 0.70 +0.3
696,339 - ABZR87_RS03300 0.70 +0.5
696,339 - ABZR87_RS03300 0.70 +1.0
696,339 - ABZR87_RS03300 0.70 +0.1
696,354 + ABZR87_RS03300 0.72 -0.4
696,354 + ABZR87_RS03300 0.72 +0.8
696,354 + ABZR87_RS03300 0.72 +0.1
696,355 - ABZR87_RS03300 0.72 +0.9
696,355 - ABZR87_RS03300 0.72 +0.3
696,593 + -0.5
696,593 + -0.1
696,594 - -0.1
696,594 - -0.1
696,594 - -0.3
696,629 + +0.8
696,698 + -0.6
696,698 + +0.7
696,698 + +0.7
696,699 - +0.5
696,705 + -0.3
696,728 + -1.2
696,728 + -1.1
696,728 + +1.4
696,728 + +0.2
696,728 + +0.5
696,729 - -0.0
696,785 + -0.3
696,785 + +0.2
696,785 + -0.3
696,786 - +0.1
696,786 - +0.1
696,786 - +0.0

Or see this region's nucleotide sequence