Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02380 and ABZR87_RS02385 overlap by 1 nucleotides ABZR87_RS02385 and ABZR87_RS02390 are separated by 245 nucleotides ABZR87_RS02390 and ABZR87_RS02395 are separated by 12 nucleotides
ABZR87_RS02380: ABZR87_RS02380 - cytochrome bc complex cytochrome b subunit, at 507,972 to 509,375
_RS02380
ABZR87_RS02385: ABZR87_RS02385 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 509,375 to 509,983
_RS02385
ABZR87_RS02390: ABZR87_RS02390 - large conductance mechanosensitive channel protein MscL, at 510,229 to 510,657
_RS02390
ABZR87_RS02395: ABZR87_RS02395 - Nif3-like dinuclear metal center hexameric protein, at 510,670 to 511,416
_RS02395
Position (kb) 509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 508.441 kb on + strand, within ABZR87_RS02380 at 508.442 kb on - strand, within ABZR87_RS02380 at 508.442 kb on - strand, within ABZR87_RS02380 at 508.528 kb on + strand, within ABZR87_RS02380 at 508.528 kb on + strand, within ABZR87_RS02380 at 508.529 kb on - strand, within ABZR87_RS02380 at 508.529 kb on - strand, within ABZR87_RS02380 at 508.613 kb on - strand, within ABZR87_RS02380 at 508.615 kb on + strand, within ABZR87_RS02380 at 508.615 kb on + strand, within ABZR87_RS02380 at 508.616 kb on - strand, within ABZR87_RS02380 at 508.617 kb on - strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.895 kb on - strand, within ABZR87_RS02380 at 508.895 kb on - strand, within ABZR87_RS02380 at 508.895 kb on - strand, within ABZR87_RS02380 at 508.921 kb on + strand, within ABZR87_RS02380 at 508.921 kb on + strand, within ABZR87_RS02380 at 508.922 kb on - strand, within ABZR87_RS02380 at 508.995 kb on - strand, within ABZR87_RS02380 at 508.995 kb on - strand, within ABZR87_RS02380 at 509.000 kb on - strand, within ABZR87_RS02380 at 509.009 kb on - strand, within ABZR87_RS02380 at 509.009 kb on - strand, within ABZR87_RS02380 at 509.009 kb on - strand, within ABZR87_RS02380 at 509.035 kb on + strand, within ABZR87_RS02380 at 509.035 kb on + strand, within ABZR87_RS02380 at 509.036 kb on - strand, within ABZR87_RS02380 at 509.036 kb on - strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.078 kb on - strand, within ABZR87_RS02380 at 509.078 kb on - strand, within ABZR87_RS02380 at 509.078 kb on - strand, within ABZR87_RS02380 at 509.131 kb on + strand, within ABZR87_RS02380 at 509.131 kb on + strand, within ABZR87_RS02380 at 509.176 kb on + strand, within ABZR87_RS02380 at 509.176 kb on + strand, within ABZR87_RS02380 at 509.176 kb on + strand, within ABZR87_RS02380 at 509.176 kb on + strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.248 kb on + strand at 509.273 kb on + strand at 509.275 kb on + strand at 509.275 kb on + strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.278 kb on + strand at 509.279 kb on - strand at 509.279 kb on - strand at 509.398 kb on + strand at 509.433 kb on + strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.626 kb on + strand, within ABZR87_RS02385 at 509.626 kb on + strand, within ABZR87_RS02385 at 509.626 kb on + strand, within ABZR87_RS02385 at 509.627 kb on - strand, within ABZR87_RS02385 at 509.627 kb on - strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.662 kb on - strand, within ABZR87_RS02385 at 509.835 kb on - strand, within ABZR87_RS02385 at 509.835 kb on - strand, within ABZR87_RS02385 at 509.942 kb on + strand at 509.942 kb on + strand at 509.942 kb on + strand at 509.943 kb on - strand at 509.943 kb on - strand at 509.943 kb on - strand at 509.943 kb on - strand at 509.943 kb on - strand at 510.011 kb on + strand at 510.011 kb on + strand at 510.012 kb on - strand at 510.046 kb on - strand at 510.046 kb on - strand at 510.088 kb on + strand at 510.090 kb on + strand at 510.090 kb on + strand at 510.090 kb on + strand at 510.091 kb on - strand at 510.091 kb on - strand at 510.091 kb on - strand at 510.091 kb on - strand at 510.185 kb on + strand at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.528 kb on + strand, within ABZR87_RS02390 at 510.529 kb on - strand, within ABZR87_RS02390 at 510.655 kb on + strand at 510.656 kb on - strand at 510.656 kb on - strand at 510.656 kb on - strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 508,441 + ABZR87_RS02380 0.33 -0.1 508,442 - ABZR87_RS02380 0.33 +0.7 508,442 - ABZR87_RS02380 0.33 -1.5 508,528 + ABZR87_RS02380 0.40 -1.7 508,528 + ABZR87_RS02380 0.40 -1.0 508,529 - ABZR87_RS02380 0.40 +0.5 508,529 - ABZR87_RS02380 0.40 +1.1 508,613 - ABZR87_RS02380 0.46 -2.8 508,615 + ABZR87_RS02380 0.46 -0.2 508,615 + ABZR87_RS02380 0.46 +0.4 508,616 - ABZR87_RS02380 0.46 -0.5 508,617 - ABZR87_RS02380 0.46 -1.6 508,810 + ABZR87_RS02380 0.60 -0.2 508,810 + ABZR87_RS02380 0.60 +0.8 508,810 + ABZR87_RS02380 0.60 +0.3 508,810 + ABZR87_RS02380 0.60 +0.1 508,810 + ABZR87_RS02380 0.60 -1.5 508,810 + ABZR87_RS02380 0.60 -0.0 508,810 + ABZR87_RS02380 0.60 +0.9 508,810 + ABZR87_RS02380 0.60 +0.4 508,811 - ABZR87_RS02380 0.60 +0.6 508,811 - ABZR87_RS02380 0.60 -0.1 508,811 - ABZR87_RS02380 0.60 -0.9 508,811 - ABZR87_RS02380 0.60 +1.2 508,811 - ABZR87_RS02380 0.60 +1.2 508,811 - ABZR87_RS02380 0.60 -0.5 508,895 - ABZR87_RS02380 0.66 +0.4 508,895 - ABZR87_RS02380 0.66 -1.5 508,895 - ABZR87_RS02380 0.66 +0.3 508,921 + ABZR87_RS02380 0.68 -1.9 508,921 + ABZR87_RS02380 0.68 -1.4 508,922 - ABZR87_RS02380 0.68 -0.4 508,995 - ABZR87_RS02380 0.73 -0.4 508,995 - ABZR87_RS02380 0.73 -0.3 509,000 - ABZR87_RS02380 0.73 +0.4 509,009 - ABZR87_RS02380 0.74 -0.8 509,009 - ABZR87_RS02380 0.74 -0.6 509,009 - ABZR87_RS02380 0.74 -0.0 509,035 + ABZR87_RS02380 0.76 -0.6 509,035 + ABZR87_RS02380 0.76 +0.8 509,036 - ABZR87_RS02380 0.76 -0.6 509,036 - ABZR87_RS02380 0.76 +0.3 509,077 + ABZR87_RS02380 0.79 -0.7 509,077 + ABZR87_RS02380 0.79 -0.4 509,077 + ABZR87_RS02380 0.79 -0.3 509,077 + ABZR87_RS02380 0.79 -0.6 509,077 + ABZR87_RS02380 0.79 +1.3 509,077 + ABZR87_RS02380 0.79 -1.4 509,078 - ABZR87_RS02380 0.79 +0.2 509,078 - ABZR87_RS02380 0.79 -0.1 509,078 - ABZR87_RS02380 0.79 +0.4 509,131 + ABZR87_RS02380 0.83 -0.1 509,131 + ABZR87_RS02380 0.83 -0.4 509,176 + ABZR87_RS02380 0.86 -2.0 509,176 + ABZR87_RS02380 0.86 -1.0 509,176 + ABZR87_RS02380 0.86 -0.9 509,176 + ABZR87_RS02380 0.86 -0.4 509,177 - ABZR87_RS02380 0.86 -0.4 509,177 - ABZR87_RS02380 0.86 +0.5 509,177 - ABZR87_RS02380 0.86 +0.8 509,177 - ABZR87_RS02380 0.86 -0.3 509,177 - ABZR87_RS02380 0.86 -0.0 509,177 - ABZR87_RS02380 0.86 +0.2 509,177 - ABZR87_RS02380 0.86 -0.1 509,177 - ABZR87_RS02380 0.86 -1.2 509,177 - ABZR87_RS02380 0.86 -0.2 509,177 - ABZR87_RS02380 0.86 -1.0 509,248 + -0.6 509,273 + -1.0 509,275 + -0.2 509,275 + -1.5 509,276 - +0.4 509,276 - -1.5 509,276 - -0.4 509,276 - -2.0 509,276 - +0.1 509,278 + -0.2 509,279 - -0.1 509,279 - -0.5 509,398 + -0.3 509,433 + -1.8 509,434 - -0.6 509,434 - +0.2 509,434 - -0.2 509,434 - -0.2 509,434 - -0.5 509,434 - -1.0 509,626 + ABZR87_RS02385 0.41 -1.3 509,626 + ABZR87_RS02385 0.41 -0.4 509,626 + ABZR87_RS02385 0.41 -0.3 509,627 - ABZR87_RS02385 0.41 -0.1 509,627 - ABZR87_RS02385 0.41 -0.9 509,661 + ABZR87_RS02385 0.47 +1.0 509,661 + ABZR87_RS02385 0.47 -1.3 509,661 + ABZR87_RS02385 0.47 +0.0 509,661 + ABZR87_RS02385 0.47 -0.7 509,662 - ABZR87_RS02385 0.47 -2.4 509,835 - ABZR87_RS02385 0.76 -1.1 509,835 - ABZR87_RS02385 0.76 +1.7 509,942 + -0.5 509,942 + -1.9 509,942 + -0.1 509,943 - -0.7 509,943 - +1.0 509,943 - -0.6 509,943 - -0.1 509,943 - -0.7 510,011 + +0.2 510,011 + -0.4 510,012 - +0.3 510,046 - -0.9 510,046 - +0.2 510,088 + -2.3 510,090 + +1.1 510,090 + -0.3 510,090 + -2.6 510,091 - +0.5 510,091 - -0.1 510,091 - +0.0 510,091 - -1.8 510,185 + -1.5 510,369 + ABZR87_RS02390 0.33 -0.0 510,369 + ABZR87_RS02390 0.33 +0.0 510,369 + ABZR87_RS02390 0.33 -0.6 510,369 + ABZR87_RS02390 0.33 -0.1 510,369 + ABZR87_RS02390 0.33 +0.1 510,370 - ABZR87_RS02390 0.33 -0.2 510,370 - ABZR87_RS02390 0.33 +0.0 510,370 - ABZR87_RS02390 0.33 -0.1 510,370 - ABZR87_RS02390 0.33 -0.2 510,370 - ABZR87_RS02390 0.33 +0.1 510,370 - ABZR87_RS02390 0.33 +0.1 510,370 - ABZR87_RS02390 0.33 -0.1 510,370 - ABZR87_RS02390 0.33 +0.1 510,438 + ABZR87_RS02390 0.49 -0.6 510,438 + ABZR87_RS02390 0.49 +0.3 510,438 + ABZR87_RS02390 0.49 +0.1 510,438 + ABZR87_RS02390 0.49 -0.0 510,438 + ABZR87_RS02390 0.49 -0.0 510,438 + ABZR87_RS02390 0.49 -0.3 510,438 + ABZR87_RS02390 0.49 +1.4 510,438 + ABZR87_RS02390 0.49 -0.1 510,439 - ABZR87_RS02390 0.49 -0.6 510,439 - ABZR87_RS02390 0.49 +0.2 510,439 - ABZR87_RS02390 0.49 +0.2 510,439 - ABZR87_RS02390 0.49 +0.0 510,439 - ABZR87_RS02390 0.49 +0.4 510,439 - ABZR87_RS02390 0.49 -0.2 510,439 - ABZR87_RS02390 0.49 +0.0 510,439 - ABZR87_RS02390 0.49 -0.1 510,528 + ABZR87_RS02390 0.70 -1.2 510,529 - ABZR87_RS02390 0.70 -0.2 510,655 + +0.2 510,656 - -0.2 510,656 - +0.5 510,656 - +0.2 510,706 + +0.3 510,706 + -0.4 510,706 + -1.4 510,706 + -0.0 510,706 + -0.2 510,707 - -0.6 510,707 - -0.2 510,707 - +0.5 510,707 - +0.4 510,785 + ABZR87_RS02395 0.15 +0.1 510,785 + ABZR87_RS02395 0.15 +1.0 510,785 + ABZR87_RS02395 0.15 -0.5 510,785 + ABZR87_RS02395 0.15 -0.3 510,785 + ABZR87_RS02395 0.15 -1.3 510,785 + ABZR87_RS02395 0.15 -0.1 510,786 - ABZR87_RS02395 0.16 -0.9 510,786 - ABZR87_RS02395 0.16 -0.5 510,786 - ABZR87_RS02395 0.16 -0.1 510,786 - ABZR87_RS02395 0.16 +0.4 510,786 - ABZR87_RS02395 0.16 +0.3 510,786 - ABZR87_RS02395 0.16 -0.4 510,786 - ABZR87_RS02395 0.16 -0.6 510,845 + ABZR87_RS02395 0.23 -0.2 510,845 + ABZR87_RS02395 0.23 -0.9 510,845 + ABZR87_RS02395 0.23 +0.2 510,846 - ABZR87_RS02395 0.24 -0.2 510,846 - ABZR87_RS02395 0.24 +0.2 510,846 - ABZR87_RS02395 0.24 -0.2 510,846 - ABZR87_RS02395 0.24 -0.5 510,846 - ABZR87_RS02395 0.24 -0.3 510,846 - ABZR87_RS02395 0.24 -0.2 510,846 - ABZR87_RS02395 0.24 +0.0 510,846 - ABZR87_RS02395 0.24 +1.1 510,846 - ABZR87_RS02395 0.24 -0.6 510,846 - ABZR87_RS02395 0.24 -0.6
Or see this region's nucleotide sequence