Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02115

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02110 and ABZR87_RS02115 are separated by 16 nucleotidesABZR87_RS02115 and ABZR87_RS02120 are separated by 74 nucleotidesABZR87_RS02120 and ABZR87_RS02125 are separated by 6 nucleotidesABZR87_RS02125 and ABZR87_RS02130 are separated by 130 nucleotides ABZR87_RS02110: ABZR87_RS02110 - phenylacetate--CoA ligase PaaK, at 453,977 to 455,281 _RS02110 ABZR87_RS02115: ABZR87_RS02115 - murein transglycosylase A, at 455,298 to 456,452 _RS02115 ABZR87_RS02120: ABZR87_RS02120 - hypothetical protein, at 456,527 to 456,760 _RS02120 ABZR87_RS02125: ABZR87_RS02125 - Co2+/Mg2+ efflux protein ApaG, at 456,767 to 457,141 _RS02125 ABZR87_RS02130: ABZR87_RS02130 - ribulose-phosphate 3-epimerase, at 457,272 to 458,000 _RS02130 Position (kb) 455 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 454.299 kb on - strand, within ABZR87_RS02110at 454.318 kb on + strand, within ABZR87_RS02110at 454.318 kb on + strand, within ABZR87_RS02110at 454.318 kb on + strand, within ABZR87_RS02110at 454.318 kb on + strand, within ABZR87_RS02110at 454.318 kb on + strand, within ABZR87_RS02110at 454.318 kb on + strand, within ABZR87_RS02110at 454.318 kb on + strand, within ABZR87_RS02110at 454.318 kb on + strand, within ABZR87_RS02110at 454.318 kb on + strand, within ABZR87_RS02110at 454.318 kb on + strand, within ABZR87_RS02110at 454.319 kb on - strand, within ABZR87_RS02110at 454.319 kb on - strand, within ABZR87_RS02110at 454.319 kb on - strand, within ABZR87_RS02110at 454.319 kb on - strand, within ABZR87_RS02110at 454.319 kb on - strand, within ABZR87_RS02110at 454.319 kb on - strand, within ABZR87_RS02110at 454.319 kb on - strand, within ABZR87_RS02110at 454.391 kb on + strand, within ABZR87_RS02110at 454.392 kb on - strand, within ABZR87_RS02110at 454.392 kb on - strand, within ABZR87_RS02110at 454.397 kb on + strand, within ABZR87_RS02110at 454.398 kb on - strand, within ABZR87_RS02110at 454.544 kb on + strand, within ABZR87_RS02110at 454.544 kb on + strand, within ABZR87_RS02110at 454.544 kb on + strand, within ABZR87_RS02110at 454.544 kb on + strand, within ABZR87_RS02110at 454.544 kb on + strand, within ABZR87_RS02110at 454.544 kb on + strand, within ABZR87_RS02110at 454.544 kb on + strand, within ABZR87_RS02110at 454.544 kb on + strand, within ABZR87_RS02110at 454.544 kb on + strand, within ABZR87_RS02110at 454.545 kb on - strand, within ABZR87_RS02110at 454.545 kb on - strand, within ABZR87_RS02110at 454.545 kb on - strand, within ABZR87_RS02110at 454.545 kb on - strand, within ABZR87_RS02110at 454.545 kb on - strand, within ABZR87_RS02110at 454.545 kb on - strand, within ABZR87_RS02110at 454.545 kb on - strand, within ABZR87_RS02110at 454.545 kb on - strand, within ABZR87_RS02110at 454.545 kb on - strand, within ABZR87_RS02110at 454.545 kb on - strand, within ABZR87_RS02110at 454.690 kb on + strand, within ABZR87_RS02110at 454.690 kb on + strand, within ABZR87_RS02110at 454.691 kb on - strand, within ABZR87_RS02110at 454.691 kb on - strand, within ABZR87_RS02110at 454.691 kb on - strand, within ABZR87_RS02110at 454.691 kb on - strand, within ABZR87_RS02110at 454.691 kb on - strand, within ABZR87_RS02110at 454.694 kb on + strand, within ABZR87_RS02110at 454.694 kb on + strand, within ABZR87_RS02110at 454.695 kb on - strand, within ABZR87_RS02110at 454.695 kb on - strand, within ABZR87_RS02110at 454.695 kb on - strand, within ABZR87_RS02110at 454.695 kb on - strand, within ABZR87_RS02110at 454.695 kb on - strand, within ABZR87_RS02110at 454.781 kb on + strand, within ABZR87_RS02110at 454.781 kb on + strand, within ABZR87_RS02110at 454.781 kb on + strand, within ABZR87_RS02110at 454.782 kb on - strand, within ABZR87_RS02110at 455.057 kb on + strand, within ABZR87_RS02110at 455.058 kb on - strand, within ABZR87_RS02110at 455.058 kb on - strand, within ABZR87_RS02110at 455.092 kb on + strand, within ABZR87_RS02110at 455.092 kb on + strand, within ABZR87_RS02110at 455.093 kb on - strand, within ABZR87_RS02110at 455.093 kb on - strand, within ABZR87_RS02110at 455.279 kb on + strandat 455.407 kb on + strandat 455.407 kb on + strandat 455.407 kb on + strandat 455.407 kb on + strandat 455.407 kb on + strandat 455.407 kb on + strandat 455.407 kb on + strandat 455.408 kb on - strandat 455.408 kb on - strandat 455.408 kb on - strandat 455.408 kb on - strandat 455.408 kb on - strandat 455.408 kb on - strandat 455.410 kb on + strandat 455.410 kb on + strandat 455.411 kb on - strandat 455.533 kb on + strand, within ABZR87_RS02115at 455.533 kb on + strand, within ABZR87_RS02115at 455.533 kb on + strand, within ABZR87_RS02115at 455.533 kb on + strand, within ABZR87_RS02115at 455.533 kb on + strand, within ABZR87_RS02115at 455.533 kb on + strand, within ABZR87_RS02115at 455.533 kb on + strand, within ABZR87_RS02115at 455.534 kb on - strand, within ABZR87_RS02115at 455.534 kb on - strand, within ABZR87_RS02115at 455.534 kb on - strand, within ABZR87_RS02115at 455.534 kb on - strand, within ABZR87_RS02115at 455.632 kb on + strand, within ABZR87_RS02115at 455.632 kb on + strand, within ABZR87_RS02115at 455.633 kb on - strand, within ABZR87_RS02115at 455.633 kb on - strand, within ABZR87_RS02115at 455.724 kb on - strand, within ABZR87_RS02115at 455.968 kb on + strand, within ABZR87_RS02115at 455.968 kb on + strand, within ABZR87_RS02115at 455.984 kb on - strand, within ABZR87_RS02115at 455.984 kb on - strand, within ABZR87_RS02115at 455.984 kb on - strand, within ABZR87_RS02115at 455.984 kb on - strand, within ABZR87_RS02115at 456.025 kb on + strand, within ABZR87_RS02115at 456.025 kb on + strand, within ABZR87_RS02115at 456.025 kb on + strand, within ABZR87_RS02115at 456.025 kb on + strand, within ABZR87_RS02115at 456.025 kb on + strand, within ABZR87_RS02115at 456.025 kb on + strand, within ABZR87_RS02115at 456.026 kb on - strand, within ABZR87_RS02115at 456.026 kb on - strand, within ABZR87_RS02115at 456.026 kb on - strand, within ABZR87_RS02115at 456.026 kb on - strand, within ABZR87_RS02115at 456.026 kb on - strand, within ABZR87_RS02115at 456.029 kb on - strand, within ABZR87_RS02115at 456.029 kb on - strand, within ABZR87_RS02115at 456.260 kb on + strand, within ABZR87_RS02115at 456.261 kb on - strand, within ABZR87_RS02115at 456.491 kb on + strandat 456.491 kb on + strandat 456.491 kb on + strandat 456.492 kb on - strandat 456.492 kb on - strandat 456.492 kb on - strandat 456.492 kb on - strandat 456.492 kb on - strandat 456.492 kb on - strandat 456.849 kb on + strand, within ABZR87_RS02125at 456.849 kb on + strand, within ABZR87_RS02125at 456.850 kb on - strand, within ABZR87_RS02125at 456.850 kb on - strand, within ABZR87_RS02125at 456.866 kb on - strand, within ABZR87_RS02125at 456.866 kb on - strand, within ABZR87_RS02125at 456.900 kb on + strand, within ABZR87_RS02125at 456.900 kb on + strand, within ABZR87_RS02125at 456.900 kb on + strand, within ABZR87_RS02125at 456.900 kb on + strand, within ABZR87_RS02125at 456.900 kb on + strand, within ABZR87_RS02125at 456.901 kb on - strand, within ABZR87_RS02125at 456.901 kb on - strand, within ABZR87_RS02125at 456.901 kb on - strand, within ABZR87_RS02125at 456.901 kb on - strand, within ABZR87_RS02125at 456.988 kb on + strand, within ABZR87_RS02125at 456.988 kb on + strand, within ABZR87_RS02125at 456.989 kb on - strand, within ABZR87_RS02125at 456.989 kb on - strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.054 kb on - strand, within ABZR87_RS02125at 457.054 kb on - strand, within ABZR87_RS02125at 457.065 kb on + strand, within ABZR87_RS02125at 457.065 kb on + strand, within ABZR87_RS02125at 457.066 kb on - strand, within ABZR87_RS02125at 457.102 kb on - strand, within ABZR87_RS02125at 457.102 kb on - strand, within ABZR87_RS02125at 457.131 kb on + strandat 457.132 kb on - strandat 457.132 kb on - strandat 457.154 kb on + strandat 457.154 kb on + strandat 457.154 kb on + strandat 457.154 kb on + strandat 457.155 kb on - strandat 457.155 kb on - strandat 457.155 kb on - strandat 457.155 kb on - strandat 457.227 kb on + strandat 457.227 kb on + strandat 457.227 kb on + strandat 457.227 kb on + strandat 457.228 kb on - strandat 457.228 kb on - strandat 457.228 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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454,299 - ABZR87_RS02110 0.25 +0.7
454,318 + ABZR87_RS02110 0.26 -0.5
454,318 + ABZR87_RS02110 0.26 +0.4
454,318 + ABZR87_RS02110 0.26 -0.1
454,318 + ABZR87_RS02110 0.26 +0.2
454,318 + ABZR87_RS02110 0.26 -0.6
454,318 + ABZR87_RS02110 0.26 +0.6
454,318 + ABZR87_RS02110 0.26 +0.2
454,318 + ABZR87_RS02110 0.26 -0.3
454,318 + ABZR87_RS02110 0.26 -0.2
454,318 + ABZR87_RS02110 0.26 +0.5
454,319 - ABZR87_RS02110 0.26 -0.1
454,319 - ABZR87_RS02110 0.26 +0.6
454,319 - ABZR87_RS02110 0.26 +0.7
454,319 - ABZR87_RS02110 0.26 +0.7
454,319 - ABZR87_RS02110 0.26 -0.4
454,319 - ABZR87_RS02110 0.26 -0.5
454,319 - ABZR87_RS02110 0.26 +0.1
454,391 + ABZR87_RS02110 0.32 +0.5
454,392 - ABZR87_RS02110 0.32 -0.1
454,392 - ABZR87_RS02110 0.32 -0.1
454,397 + ABZR87_RS02110 0.32 -0.1
454,398 - ABZR87_RS02110 0.32 -0.4
454,544 + ABZR87_RS02110 0.43 +1.1
454,544 + ABZR87_RS02110 0.43 -0.2
454,544 + ABZR87_RS02110 0.43 +0.2
454,544 + ABZR87_RS02110 0.43 +0.1
454,544 + ABZR87_RS02110 0.43 -0.1
454,544 + ABZR87_RS02110 0.43 +0.5
454,544 + ABZR87_RS02110 0.43 -0.9
454,544 + ABZR87_RS02110 0.43 -0.1
454,544 + ABZR87_RS02110 0.43 +0.3
454,545 - ABZR87_RS02110 0.44 -0.6
454,545 - ABZR87_RS02110 0.44 -0.9
454,545 - ABZR87_RS02110 0.44 +0.5
454,545 - ABZR87_RS02110 0.44 +0.5
454,545 - ABZR87_RS02110 0.44 +0.2
454,545 - ABZR87_RS02110 0.44 -0.1
454,545 - ABZR87_RS02110 0.44 -0.5
454,545 - ABZR87_RS02110 0.44 +0.0
454,545 - ABZR87_RS02110 0.44 -1.1
454,545 - ABZR87_RS02110 0.44 -0.2
454,690 + ABZR87_RS02110 0.55 -0.4
454,690 + ABZR87_RS02110 0.55 -0.5
454,691 - ABZR87_RS02110 0.55 -0.1
454,691 - ABZR87_RS02110 0.55 +0.9
454,691 - ABZR87_RS02110 0.55 -0.9
454,691 - ABZR87_RS02110 0.55 +0.7
454,691 - ABZR87_RS02110 0.55 +0.7
454,694 + ABZR87_RS02110 0.55 -0.4
454,694 + ABZR87_RS02110 0.55 -1.2
454,695 - ABZR87_RS02110 0.55 -0.3
454,695 - ABZR87_RS02110 0.55 -0.2
454,695 - ABZR87_RS02110 0.55 +0.4
454,695 - ABZR87_RS02110 0.55 +0.9
454,695 - ABZR87_RS02110 0.55 -0.1
454,781 + ABZR87_RS02110 0.62 -0.2
454,781 + ABZR87_RS02110 0.62 +0.5
454,781 + ABZR87_RS02110 0.62 +0.0
454,782 - ABZR87_RS02110 0.62 +1.7
455,057 + ABZR87_RS02110 0.83 +0.1
455,058 - ABZR87_RS02110 0.83 -1.5
455,058 - ABZR87_RS02110 0.83 +1.7
455,092 + ABZR87_RS02110 0.85 +0.1
455,092 + ABZR87_RS02110 0.85 -0.2
455,093 - ABZR87_RS02110 0.86 +0.8
455,093 - ABZR87_RS02110 0.86 -0.8
455,279 + +0.4
455,407 + -0.1
455,407 + +0.3
455,407 + +1.3
455,407 + -0.5
455,407 + +0.2
455,407 + +1.4
455,407 + +0.9
455,408 - +0.3
455,408 - +0.0
455,408 - +0.6
455,408 - -0.2
455,408 - +0.4
455,408 - +0.7
455,410 + +0.7
455,410 + -0.0
455,411 - +0.8
455,533 + ABZR87_RS02115 0.20 +2.1
455,533 + ABZR87_RS02115 0.20 +1.7
455,533 + ABZR87_RS02115 0.20 -1.4
455,533 + ABZR87_RS02115 0.20 +0.7
455,533 + ABZR87_RS02115 0.20 +0.0
455,533 + ABZR87_RS02115 0.20 -1.3
455,533 + ABZR87_RS02115 0.20 -0.2
455,534 - ABZR87_RS02115 0.20 +0.1
455,534 - ABZR87_RS02115 0.20 +0.5
455,534 - ABZR87_RS02115 0.20 -1.0
455,534 - ABZR87_RS02115 0.20 +0.4
455,632 + ABZR87_RS02115 0.29 +0.4
455,632 + ABZR87_RS02115 0.29 -1.3
455,633 - ABZR87_RS02115 0.29 -0.9
455,633 - ABZR87_RS02115 0.29 +0.5
455,724 - ABZR87_RS02115 0.37 +0.7
455,968 + ABZR87_RS02115 0.58 +0.6
455,968 + ABZR87_RS02115 0.58 +0.4
455,984 - ABZR87_RS02115 0.59 +0.2
455,984 - ABZR87_RS02115 0.59 -0.9
455,984 - ABZR87_RS02115 0.59 +1.0
455,984 - ABZR87_RS02115 0.59 -2.7
456,025 + ABZR87_RS02115 0.63 +1.0
456,025 + ABZR87_RS02115 0.63 +0.3
456,025 + ABZR87_RS02115 0.63 -0.1
456,025 + ABZR87_RS02115 0.63 +1.5
456,025 + ABZR87_RS02115 0.63 -0.3
456,025 + ABZR87_RS02115 0.63 +0.1
456,026 - ABZR87_RS02115 0.63 -0.8
456,026 - ABZR87_RS02115 0.63 -0.1
456,026 - ABZR87_RS02115 0.63 +0.1
456,026 - ABZR87_RS02115 0.63 -1.3
456,026 - ABZR87_RS02115 0.63 -1.9
456,029 - ABZR87_RS02115 0.63 -1.1
456,029 - ABZR87_RS02115 0.63 +0.1
456,260 + ABZR87_RS02115 0.83 -1.5
456,261 - ABZR87_RS02115 0.83 -0.2
456,491 + -0.3
456,491 + -1.1
456,491 + +0.0
456,492 - +0.5
456,492 - +0.1
456,492 - +0.9
456,492 - -0.3
456,492 - +0.2
456,492 - +0.7
456,849 + ABZR87_RS02125 0.22 -0.1
456,849 + ABZR87_RS02125 0.22 -1.2
456,850 - ABZR87_RS02125 0.22 +0.2
456,850 - ABZR87_RS02125 0.22 -0.1
456,866 - ABZR87_RS02125 0.26 +0.1
456,866 - ABZR87_RS02125 0.26 -0.5
456,900 + ABZR87_RS02125 0.35 -0.3
456,900 + ABZR87_RS02125 0.35 +0.1
456,900 + ABZR87_RS02125 0.35 +0.6
456,900 + ABZR87_RS02125 0.35 -0.2
456,900 + ABZR87_RS02125 0.35 -0.9
456,901 - ABZR87_RS02125 0.36 +0.3
456,901 - ABZR87_RS02125 0.36 -3.3
456,901 - ABZR87_RS02125 0.36 +0.0
456,901 - ABZR87_RS02125 0.36 +0.1
456,988 + ABZR87_RS02125 0.59 +0.1
456,988 + ABZR87_RS02125 0.59 -0.6
456,989 - ABZR87_RS02125 0.59 +0.9
456,989 - ABZR87_RS02125 0.59 -0.5
457,053 + ABZR87_RS02125 0.76 -0.1
457,053 + ABZR87_RS02125 0.76 -0.1
457,053 + ABZR87_RS02125 0.76 +0.4
457,053 + ABZR87_RS02125 0.76 -0.3
457,054 - ABZR87_RS02125 0.77 +0.0
457,054 - ABZR87_RS02125 0.77 +0.7
457,065 + ABZR87_RS02125 0.79 +1.0
457,065 + ABZR87_RS02125 0.79 -0.9
457,066 - ABZR87_RS02125 0.80 +0.0
457,102 - ABZR87_RS02125 0.89 -0.1
457,102 - ABZR87_RS02125 0.89 -0.6
457,131 + -0.0
457,132 - -0.3
457,132 - -1.0
457,154 + +0.0
457,154 + -0.4
457,154 + +0.1
457,154 + +0.9
457,155 - +0.7
457,155 - -0.3
457,155 - +0.2
457,155 - +0.4
457,227 + +1.3
457,227 + -0.3
457,227 + -0.3
457,227 + +1.1
457,228 - -0.3
457,228 - +0.1
457,228 - +0.3

Or see this region's nucleotide sequence