Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01580

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01570 and ABZR87_RS01575 overlap by 4 nucleotidesABZR87_RS01575 and ABZR87_RS01580 are separated by 32 nucleotidesABZR87_RS01580 and ABZR87_RS01585 are separated by 1 nucleotidesABZR87_RS01585 and ABZR87_RS01590 are separated by 39 nucleotides ABZR87_RS01570: ABZR87_RS01570 - thiamine-phosphate kinase, at 331,793 to 332,878 _RS01570 ABZR87_RS01575: ABZR87_RS01575 - phosphatidylglycerophosphatase A, at 332,875 to 333,453 _RS01575 ABZR87_RS01580: ABZR87_RS01580 - CinA family protein, at 333,486 to 333,986 _RS01580 ABZR87_RS01585: ABZR87_RS01585 - hypothetical protein, at 333,988 to 334,206 _RS01585 ABZR87_RS01590: ABZR87_RS01590 - orotidine-5'-phosphate decarboxylase, at 334,246 to 335,061 _RS01590 Position (kb) 333 334Strain fitness (log2 ratio) -1 0 1at 333.480 kb on - strandat 333.480 kb on - strandat 333.613 kb on + strand, within ABZR87_RS01580at 333.614 kb on - strand, within ABZR87_RS01580at 333.614 kb on - strand, within ABZR87_RS01580at 333.794 kb on + strand, within ABZR87_RS01580at 333.989 kb on + strandat 333.989 kb on + strandat 333.990 kb on - strandat 333.990 kb on - strandat 334.534 kb on + strand, within ABZR87_RS01590at 334.534 kb on + strand, within ABZR87_RS01590at 334.535 kb on - strand, within ABZR87_RS01590

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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333,480 - +0.9
333,480 - +0.3
333,613 + ABZR87_RS01580 0.25 -0.3
333,614 - ABZR87_RS01580 0.26 -0.4
333,614 - ABZR87_RS01580 0.26 -0.6
333,794 + ABZR87_RS01580 0.61 -0.6
333,989 + +0.4
333,989 + +0.1
333,990 - +0.8
333,990 - -1.0
334,534 + ABZR87_RS01590 0.35 +1.7
334,534 + ABZR87_RS01590 0.35 +0.1
334,535 - ABZR87_RS01590 0.35 -0.3

Or see this region's nucleotide sequence