Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01145

Experiment: Ra3_0.01

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS01135 and ABZR87_RS01140 are separated by 17 nucleotidesABZR87_RS01140 and ABZR87_RS01145 are separated by 22 nucleotidesABZR87_RS01145 and ABZR87_RS01150 are separated by 26 nucleotides ABZR87_RS01135: ABZR87_RS01135 - FAD-linked oxidase C-terminal domain-containing protein, at 235,898 to 237,397 _RS01135 ABZR87_RS01140: ABZR87_RS01140 - ion transporter, at 237,415 to 238,359 _RS01140 ABZR87_RS01145: ABZR87_RS01145 - glycolate oxidase subunit GlcE, at 238,382 to 239,515 _RS01145 ABZR87_RS01150: ABZR87_RS01150 - glycolate oxidase subunit GlcF, at 239,542 to 240,786 _RS01150 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2 3at 237.395 kb on + strandat 237.436 kb on - strandat 237.456 kb on + strandat 237.456 kb on + strandat 237.456 kb on + strandat 237.456 kb on + strandat 237.457 kb on - strandat 237.457 kb on - strandat 237.476 kb on - strandat 237.476 kb on - strandat 237.517 kb on + strand, within ABZR87_RS01140at 237.517 kb on + strand, within ABZR87_RS01140at 237.517 kb on + strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.629 kb on + strand, within ABZR87_RS01140at 237.629 kb on + strand, within ABZR87_RS01140at 237.629 kb on + strand, within ABZR87_RS01140at 237.629 kb on + strand, within ABZR87_RS01140at 237.697 kb on + strand, within ABZR87_RS01140at 237.697 kb on + strand, within ABZR87_RS01140at 237.697 kb on + strand, within ABZR87_RS01140at 237.697 kb on + strand, within ABZR87_RS01140at 237.698 kb on - strand, within ABZR87_RS01140at 237.698 kb on - strand, within ABZR87_RS01140at 237.698 kb on - strand, within ABZR87_RS01140at 237.736 kb on + strand, within ABZR87_RS01140at 237.737 kb on - strand, within ABZR87_RS01140at 237.817 kb on + strand, within ABZR87_RS01140at 237.817 kb on + strand, within ABZR87_RS01140at 237.817 kb on + strand, within ABZR87_RS01140at 237.818 kb on - strand, within ABZR87_RS01140at 237.818 kb on - strand, within ABZR87_RS01140at 237.880 kb on + strand, within ABZR87_RS01140at 237.881 kb on - strand, within ABZR87_RS01140at 237.991 kb on + strand, within ABZR87_RS01140at 237.991 kb on + strand, within ABZR87_RS01140at 237.991 kb on + strand, within ABZR87_RS01140at 237.991 kb on + strand, within ABZR87_RS01140at 237.991 kb on + strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 238.042 kb on + strand, within ABZR87_RS01140at 238.042 kb on + strand, within ABZR87_RS01140at 238.042 kb on + strand, within ABZR87_RS01140at 238.042 kb on + strand, within ABZR87_RS01140at 238.043 kb on - strand, within ABZR87_RS01140at 238.043 kb on - strand, within ABZR87_RS01140at 238.043 kb on - strand, within ABZR87_RS01140at 238.043 kb on - strand, within ABZR87_RS01140at 238.489 kb on + strandat 238.568 kb on + strand, within ABZR87_RS01145at 238.568 kb on + strand, within ABZR87_RS01145at 238.568 kb on + strand, within ABZR87_RS01145at 238.569 kb on - strand, within ABZR87_RS01145at 239.501 kb on + strandat 239.501 kb on + strandat 239.502 kb on - strandat 239.502 kb on - strandat 239.502 kb on - strandat 239.527 kb on + strandat 239.527 kb on + strandat 239.528 kb on - strandat 239.653 kb on + strandat 239.653 kb on + strandat 239.654 kb on - strandat 239.654 kb on - strandat 239.698 kb on + strand, within ABZR87_RS01150at 239.698 kb on + strand, within ABZR87_RS01150at 239.698 kb on + strand, within ABZR87_RS01150at 239.698 kb on + strand, within ABZR87_RS01150at 239.699 kb on - strand, within ABZR87_RS01150at 239.699 kb on - strand, within ABZR87_RS01150at 239.699 kb on - strand, within ABZR87_RS01150at 239.812 kb on + strand, within ABZR87_RS01150at 239.813 kb on - strand, within ABZR87_RS01150at 239.813 kb on - strand, within ABZR87_RS01150at 240.086 kb on + strand, within ABZR87_RS01150at 240.086 kb on + strand, within ABZR87_RS01150at 240.086 kb on + strand, within ABZR87_RS01150at 240.086 kb on + strand, within ABZR87_RS01150at 240.086 kb on + strand, within ABZR87_RS01150at 240.087 kb on - strand, within ABZR87_RS01150at 240.196 kb on + strand, within ABZR87_RS01150at 240.196 kb on + strand, within ABZR87_RS01150at 240.328 kb on + strand, within ABZR87_RS01150at 240.328 kb on + strand, within ABZR87_RS01150at 240.358 kb on + strand, within ABZR87_RS01150at 240.359 kb on - strand, within ABZR87_RS01150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
remove
237,395 + +0.8
237,436 - +0.2
237,456 + -0.4
237,456 + -0.7
237,456 + -1.5
237,456 + -0.3
237,457 - -0.2
237,457 - -0.1
237,476 - -0.3
237,476 - -0.1
237,517 + ABZR87_RS01140 0.11 -1.2
237,517 + ABZR87_RS01140 0.11 +0.1
237,517 + ABZR87_RS01140 0.11 +0.2
237,518 - ABZR87_RS01140 0.11 +0.3
237,518 - ABZR87_RS01140 0.11 +0.8
237,518 - ABZR87_RS01140 0.11 -0.1
237,518 - ABZR87_RS01140 0.11 +1.6
237,518 - ABZR87_RS01140 0.11 +1.6
237,518 - ABZR87_RS01140 0.11 -0.7
237,518 - ABZR87_RS01140 0.11 -0.2
237,518 - ABZR87_RS01140 0.11 +0.5
237,518 - ABZR87_RS01140 0.11 +0.9
237,629 + ABZR87_RS01140 0.23 -1.8
237,629 + ABZR87_RS01140 0.23 -0.3
237,629 + ABZR87_RS01140 0.23 +0.4
237,629 + ABZR87_RS01140 0.23 -1.0
237,697 + ABZR87_RS01140 0.30 -0.4
237,697 + ABZR87_RS01140 0.30 +0.5
237,697 + ABZR87_RS01140 0.30 +0.4
237,697 + ABZR87_RS01140 0.30 +0.9
237,698 - ABZR87_RS01140 0.30 -0.4
237,698 - ABZR87_RS01140 0.30 +1.4
237,698 - ABZR87_RS01140 0.30 -1.7
237,736 + ABZR87_RS01140 0.34 +0.6
237,737 - ABZR87_RS01140 0.34 +1.1
237,817 + ABZR87_RS01140 0.43 -0.4
237,817 + ABZR87_RS01140 0.43 +0.0
237,817 + ABZR87_RS01140 0.43 -0.6
237,818 - ABZR87_RS01140 0.43 -1.0
237,818 - ABZR87_RS01140 0.43 +0.1
237,880 + ABZR87_RS01140 0.49 -0.2
237,881 - ABZR87_RS01140 0.49 +0.2
237,991 + ABZR87_RS01140 0.61 +0.0
237,991 + ABZR87_RS01140 0.61 -0.0
237,991 + ABZR87_RS01140 0.61 -0.7
237,991 + ABZR87_RS01140 0.61 +0.1
237,991 + ABZR87_RS01140 0.61 -0.0
237,992 - ABZR87_RS01140 0.61 -0.3
237,992 - ABZR87_RS01140 0.61 -0.0
237,992 - ABZR87_RS01140 0.61 +0.3
237,992 - ABZR87_RS01140 0.61 +0.3
237,992 - ABZR87_RS01140 0.61 -0.8
237,992 - ABZR87_RS01140 0.61 -0.3
238,042 + ABZR87_RS01140 0.66 +0.3
238,042 + ABZR87_RS01140 0.66 -0.4
238,042 + ABZR87_RS01140 0.66 -0.2
238,042 + ABZR87_RS01140 0.66 -1.0
238,043 - ABZR87_RS01140 0.66 -1.2
238,043 - ABZR87_RS01140 0.66 +0.5
238,043 - ABZR87_RS01140 0.66 +0.8
238,043 - ABZR87_RS01140 0.66 +0.1
238,489 + -0.0
238,568 + ABZR87_RS01145 0.16 -1.7
238,568 + ABZR87_RS01145 0.16 -1.0
238,568 + ABZR87_RS01145 0.16 -0.6
238,569 - ABZR87_RS01145 0.16 +0.3
239,501 + +1.0
239,501 + +1.1
239,502 - -0.3
239,502 - -0.7
239,502 - +0.2
239,527 + +0.2
239,527 + +0.1
239,528 - -0.2
239,653 + +0.0
239,653 + -0.1
239,654 - +0.1
239,654 - -0.7
239,698 + ABZR87_RS01150 0.13 -0.4
239,698 + ABZR87_RS01150 0.13 +1.0
239,698 + ABZR87_RS01150 0.13 +1.8
239,698 + ABZR87_RS01150 0.13 +0.5
239,699 - ABZR87_RS01150 0.13 +2.3
239,699 - ABZR87_RS01150 0.13 -1.8
239,699 - ABZR87_RS01150 0.13 -1.9
239,812 + ABZR87_RS01150 0.22 +0.1
239,813 - ABZR87_RS01150 0.22 +0.0
239,813 - ABZR87_RS01150 0.22 +3.0
240,086 + ABZR87_RS01150 0.44 -0.4
240,086 + ABZR87_RS01150 0.44 +0.4
240,086 + ABZR87_RS01150 0.44 +0.2
240,086 + ABZR87_RS01150 0.44 -0.7
240,086 + ABZR87_RS01150 0.44 +0.6
240,087 - ABZR87_RS01150 0.44 -0.3
240,196 + ABZR87_RS01150 0.53 -1.6
240,196 + ABZR87_RS01150 0.53 +0.1
240,328 + ABZR87_RS01150 0.63 +0.9
240,328 + ABZR87_RS01150 0.63 -0.3
240,358 + ABZR87_RS01150 0.66 -0.3
240,359 - ABZR87_RS01150 0.66 +0.4

Or see this region's nucleotide sequence