Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00830

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00825 and ABZR87_RS00830 are separated by 148 nucleotidesABZR87_RS00830 and ABZR87_RS00835 are separated by 148 nucleotides ABZR87_RS00825: ABZR87_RS00825 - UDP-N-acetylmuramate dehydrogenase, at 165,917 to 166,945 _RS00825 ABZR87_RS00830: ABZR87_RS00830 - pyrimidine/purine nucleoside phosphorylase, at 167,094 to 167,411 _RS00830 ABZR87_RS00835: ABZR87_RS00835 - argininosuccinate synthase, at 167,560 to 168,897 _RS00835 Position (kb) 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1at 166.943 kb on + strandat 166.944 kb on - strandat 166.944 kb on - strandat 166.944 kb on - strandat 166.944 kb on - strandat 166.944 kb on - strandat 167.023 kb on + strandat 167.024 kb on - strandat 167.046 kb on + strandat 167.145 kb on + strand, within ABZR87_RS00830at 167.145 kb on + strand, within ABZR87_RS00830at 167.145 kb on + strand, within ABZR87_RS00830at 167.145 kb on + strand, within ABZR87_RS00830at 167.145 kb on + strand, within ABZR87_RS00830at 167.146 kb on - strand, within ABZR87_RS00830at 167.146 kb on - strand, within ABZR87_RS00830at 167.177 kb on + strand, within ABZR87_RS00830at 167.178 kb on - strand, within ABZR87_RS00830at 167.286 kb on + strand, within ABZR87_RS00830at 167.287 kb on - strand, within ABZR87_RS00830at 167.287 kb on - strand, within ABZR87_RS00830at 167.287 kb on - strand, within ABZR87_RS00830at 167.386 kb on - strandat 167.386 kb on - strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.391 kb on + strandat 167.392 kb on - strandat 167.392 kb on - strandat 167.392 kb on - strandat 167.392 kb on - strandat 167.392 kb on - strandat 167.404 kb on - strandat 167.427 kb on + strandat 167.473 kb on + strandat 167.473 kb on + strandat 167.473 kb on + strandat 167.473 kb on + strandat 167.473 kb on + strandat 167.474 kb on - strandat 167.474 kb on - strandat 167.474 kb on - strandat 167.674 kb on + strandat 167.680 kb on + strandat 167.680 kb on + strandat 167.680 kb on + strandat 167.681 kb on - strandat 167.681 kb on - strandat 167.716 kb on + strand, within ABZR87_RS00835at 167.716 kb on + strand, within ABZR87_RS00835at 167.716 kb on + strand, within ABZR87_RS00835at 167.716 kb on + strand, within ABZR87_RS00835at 167.716 kb on + strand, within ABZR87_RS00835at 167.717 kb on - strand, within ABZR87_RS00835at 167.717 kb on - strand, within ABZR87_RS00835at 167.747 kb on - strand, within ABZR87_RS00835at 167.850 kb on + strand, within ABZR87_RS00835at 167.850 kb on + strand, within ABZR87_RS00835at 167.850 kb on + strand, within ABZR87_RS00835at 167.850 kb on + strand, within ABZR87_RS00835at 167.850 kb on + strand, within ABZR87_RS00835at 167.851 kb on - strand, within ABZR87_RS00835at 167.851 kb on - strand, within ABZR87_RS00835at 167.851 kb on - strand, within ABZR87_RS00835at 167.851 kb on - strand, within ABZR87_RS00835at 167.851 kb on - strand, within ABZR87_RS00835at 167.855 kb on - strand, within ABZR87_RS00835at 167.855 kb on - strand, within ABZR87_RS00835at 167.980 kb on + strand, within ABZR87_RS00835at 167.986 kb on + strand, within ABZR87_RS00835at 168.019 kb on + strand, within ABZR87_RS00835at 168.019 kb on + strand, within ABZR87_RS00835at 168.130 kb on + strand, within ABZR87_RS00835at 168.131 kb on - strand, within ABZR87_RS00835

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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166,943 + -1.9
166,944 - +0.4
166,944 - +1.4
166,944 - -0.5
166,944 - +0.7
166,944 - -0.5
167,023 + +1.3
167,024 - -0.1
167,046 + +0.2
167,145 + ABZR87_RS00830 0.16 +0.8
167,145 + ABZR87_RS00830 0.16 -1.0
167,145 + ABZR87_RS00830 0.16 -0.0
167,145 + ABZR87_RS00830 0.16 -0.3
167,145 + ABZR87_RS00830 0.16 +0.5
167,146 - ABZR87_RS00830 0.16 -0.6
167,146 - ABZR87_RS00830 0.16 -2.8
167,177 + ABZR87_RS00830 0.26 -1.3
167,178 - ABZR87_RS00830 0.26 -1.1
167,286 + ABZR87_RS00830 0.60 -1.5
167,287 - ABZR87_RS00830 0.61 -1.0
167,287 - ABZR87_RS00830 0.61 -1.8
167,287 - ABZR87_RS00830 0.61 -0.7
167,386 - -1.0
167,386 - +0.3
167,391 + -0.7
167,391 + +0.5
167,391 + -0.1
167,391 + +0.9
167,391 + +1.2
167,391 + +0.2
167,391 + -0.5
167,391 + +0.3
167,391 + -0.7
167,391 + +0.5
167,392 - -1.0
167,392 - -0.3
167,392 - -1.1
167,392 - -0.7
167,392 - +0.2
167,404 - -0.2
167,427 + -0.4
167,473 + -0.4
167,473 + -0.2
167,473 + +0.6
167,473 + +0.1
167,473 + -0.4
167,474 - -0.1
167,474 - -1.0
167,474 - -1.6
167,674 + +0.0
167,680 + +0.2
167,680 + -1.0
167,680 + -3.0
167,681 - -1.5
167,681 - -0.7
167,716 + ABZR87_RS00835 0.12 -1.0
167,716 + ABZR87_RS00835 0.12 +0.6
167,716 + ABZR87_RS00835 0.12 -2.4
167,716 + ABZR87_RS00835 0.12 -1.4
167,716 + ABZR87_RS00835 0.12 -0.2
167,717 - ABZR87_RS00835 0.12 -0.8
167,717 - ABZR87_RS00835 0.12 -0.4
167,747 - ABZR87_RS00835 0.14 +0.6
167,850 + ABZR87_RS00835 0.22 -2.5
167,850 + ABZR87_RS00835 0.22 -1.1
167,850 + ABZR87_RS00835 0.22 -1.9
167,850 + ABZR87_RS00835 0.22 -1.0
167,850 + ABZR87_RS00835 0.22 -1.2
167,851 - ABZR87_RS00835 0.22 -2.4
167,851 - ABZR87_RS00835 0.22 +1.0
167,851 - ABZR87_RS00835 0.22 -1.2
167,851 - ABZR87_RS00835 0.22 -1.4
167,851 - ABZR87_RS00835 0.22 -2.4
167,855 - ABZR87_RS00835 0.22 -1.5
167,855 - ABZR87_RS00835 0.22 -0.7
167,980 + ABZR87_RS00835 0.31 -0.7
167,986 + ABZR87_RS00835 0.32 -2.8
168,019 + ABZR87_RS00835 0.34 +0.0
168,019 + ABZR87_RS00835 0.34 -1.8
168,130 + ABZR87_RS00835 0.43 -1.1
168,131 - ABZR87_RS00835 0.43 +0.6

Or see this region's nucleotide sequence