Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00460 and ABZR87_RS00465 are separated by 259 nucleotides ABZR87_RS00465 and ABZR87_RS00470 are separated by 278 nucleotides ABZR87_RS00470 and ABZR87_RS00475 are separated by 187 nucleotides
ABZR87_RS00460: ABZR87_RS00460 - NADP-dependent isocitrate dehydrogenase, at 95,213 to 96,463
_RS00460
ABZR87_RS00465: ABZR87_RS00465 - sorbitol dehydrogenase family protein, at 96,723 to 97,205
_RS00465
ABZR87_RS00470: ABZR87_RS00470 - hypothetical protein, at 97,484 to 97,693
_RS00470
ABZR87_RS00475: ABZR87_RS00475 - metallophosphoesterase, at 97,881 to 99,395
_RS00475
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1 at 96.582 kb on - strand at 96.582 kb on - strand at 96.670 kb on + strand at 97.422 kb on + strand at 97.440 kb on + strand at 97.455 kb on + strand at 97.455 kb on + strand at 97.456 kb on - strand at 97.469 kb on - strand at 97.470 kb on + strand at 97.471 kb on - strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.821 kb on + strand at 97.822 kb on - strand at 97.840 kb on + strand at 97.841 kb on - strand at 97.841 kb on - strand at 97.841 kb on - strand at 98.118 kb on + strand, within ABZR87_RS00475 at 98.118 kb on + strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.120 kb on + strand, within ABZR87_RS00475 at 98.120 kb on + strand, within ABZR87_RS00475 at 98.121 kb on - strand, within ABZR87_RS00475 at 98.121 kb on - strand, within ABZR87_RS00475 at 98.121 kb on - strand, within ABZR87_RS00475
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 96,582 - -0.4 96,582 - -0.2 96,670 + -0.8 97,422 + -0.1 97,440 + -2.4 97,455 + -0.9 97,455 + +0.4 97,456 - +0.1 97,469 - -0.4 97,470 + -0.3 97,471 - -0.6 97,691 + +0.8 97,691 + -0.5 97,691 + +0.4 97,691 + -1.4 97,691 + -0.0 97,692 - +0.4 97,692 - +0.4 97,692 - -2.1 97,692 - -0.1 97,692 - -0.2 97,692 - +0.6 97,692 - +0.4 97,692 - -0.1 97,692 - +0.6 97,749 + +0.4 97,749 + -2.0 97,749 + +0.6 97,749 + -0.4 97,749 + +0.2 97,749 + +0.6 97,750 - +0.3 97,750 - +0.0 97,750 - +0.2 97,750 - +0.1 97,750 - -0.0 97,750 - -0.2 97,750 - +0.9 97,750 - -0.5 97,821 + -0.9 97,822 - +0.1 97,840 + -0.5 97,841 - +0.4 97,841 - -0.2 97,841 - +1.1 98,118 + ABZR87_RS00475 0.16 +0.8 98,118 + ABZR87_RS00475 0.16 -0.8 98,119 - ABZR87_RS00475 0.16 +0.4 98,119 - ABZR87_RS00475 0.16 -0.5 98,119 - ABZR87_RS00475 0.16 -0.1 98,119 - ABZR87_RS00475 0.16 -0.3 98,119 - ABZR87_RS00475 0.16 +0.7 98,119 - ABZR87_RS00475 0.16 +0.2 98,119 - ABZR87_RS00475 0.16 -0.1 98,120 + ABZR87_RS00475 0.16 -0.2 98,120 + ABZR87_RS00475 0.16 +1.2 98,121 - ABZR87_RS00475 0.16 -0.2 98,121 - ABZR87_RS00475 0.16 +0.6 98,121 - ABZR87_RS00475 0.16 +0.0
Or see this region's nucleotide sequence