Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00435

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00425 and ABZR87_RS00430 overlap by 4 nucleotidesABZR87_RS00430 and ABZR87_RS00435 are separated by 70 nucleotidesABZR87_RS00435 and ABZR87_RS00440 overlap by 4 nucleotidesABZR87_RS00440 and ABZR87_RS00445 are separated by 576 nucleotides ABZR87_RS00425: ABZR87_RS00425 - LLM class flavin-dependent oxidoreductase, at 88,152 to 89,198 _RS00425 ABZR87_RS00430: ABZR87_RS00430 - dUTP diphosphatase, at 89,195 to 89,641 _RS00430 ABZR87_RS00435: ABZR87_RS00435 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 89,712 to 92,000 _RS00435 ABZR87_RS00440: ABZR87_RS00440 - ATP-dependent Clp protease adapter ClpS, at 91,997 to 92,323 _RS00440 ABZR87_RS00445: ABZR87_RS00445 - cold-shock protein, at 92,900 to 93,103 _RS00445 Position (kb) 89 90 91 92 93Strain fitness (log2 ratio) -2 -1 0 1at 88.776 kb on + strand, within ABZR87_RS00425at 88.777 kb on - strand, within ABZR87_RS00425at 88.801 kb on - strand, within ABZR87_RS00425at 88.815 kb on + strand, within ABZR87_RS00425at 88.815 kb on + strand, within ABZR87_RS00425at 88.816 kb on - strand, within ABZR87_RS00425at 88.816 kb on - strand, within ABZR87_RS00425at 88.962 kb on + strand, within ABZR87_RS00425at 88.962 kb on + strand, within ABZR87_RS00425at 88.962 kb on + strand, within ABZR87_RS00425at 88.963 kb on - strand, within ABZR87_RS00425at 88.963 kb on - strand, within ABZR87_RS00425at 89.106 kb on + strandat 89.107 kb on - strandat 89.128 kb on - strandat 89.659 kb on - strandat 90.137 kb on + strand, within ABZR87_RS00435at 90.138 kb on - strand, within ABZR87_RS00435at 90.138 kb on - strand, within ABZR87_RS00435at 90.379 kb on + strand, within ABZR87_RS00435at 90.379 kb on + strand, within ABZR87_RS00435at 90.380 kb on - strand, within ABZR87_RS00435at 90.427 kb on + strand, within ABZR87_RS00435at 90.427 kb on + strand, within ABZR87_RS00435at 90.427 kb on + strand, within ABZR87_RS00435at 90.427 kb on + strand, within ABZR87_RS00435at 90.428 kb on - strand, within ABZR87_RS00435at 90.428 kb on - strand, within ABZR87_RS00435at 90.543 kb on - strand, within ABZR87_RS00435at 90.543 kb on - strand, within ABZR87_RS00435at 90.881 kb on - strand, within ABZR87_RS00435at 91.018 kb on + strand, within ABZR87_RS00435at 91.018 kb on + strand, within ABZR87_RS00435at 91.018 kb on + strand, within ABZR87_RS00435at 91.018 kb on + strand, within ABZR87_RS00435at 91.019 kb on - strand, within ABZR87_RS00435at 91.222 kb on + strand, within ABZR87_RS00435at 91.223 kb on - strand, within ABZR87_RS00435at 91.223 kb on - strand, within ABZR87_RS00435at 91.262 kb on - strand, within ABZR87_RS00435at 91.262 kb on - strand, within ABZR87_RS00435at 91.262 kb on - strand, within ABZR87_RS00435at 91.630 kb on + strand, within ABZR87_RS00435at 91.630 kb on + strand, within ABZR87_RS00435at 91.630 kb on + strand, within ABZR87_RS00435at 91.631 kb on - strand, within ABZR87_RS00435at 91.631 kb on - strand, within ABZR87_RS00435at 91.631 kb on - strand, within ABZR87_RS00435at 91.633 kb on + strand, within ABZR87_RS00435at 91.633 kb on + strand, within ABZR87_RS00435at 91.633 kb on + strand, within ABZR87_RS00435at 91.633 kb on + strand, within ABZR87_RS00435at 91.633 kb on + strand, within ABZR87_RS00435at 91.634 kb on - strand, within ABZR87_RS00435at 91.634 kb on - strand, within ABZR87_RS00435at 91.634 kb on - strand, within ABZR87_RS00435at 91.634 kb on - strand, within ABZR87_RS00435at 91.925 kb on + strandat 91.926 kb on - strandat 91.926 kb on - strandat 92.054 kb on + strand, within ABZR87_RS00440at 92.054 kb on + strand, within ABZR87_RS00440at 92.054 kb on + strand, within ABZR87_RS00440at 92.055 kb on - strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.091 kb on + strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.092 kb on - strand, within ABZR87_RS00440at 92.095 kb on + strand, within ABZR87_RS00440at 92.095 kb on + strand, within ABZR87_RS00440at 92.095 kb on + strand, within ABZR87_RS00440at 92.095 kb on + strand, within ABZR87_RS00440at 92.096 kb on - strand, within ABZR87_RS00440at 92.096 kb on - strand, within ABZR87_RS00440at 92.110 kb on + strand, within ABZR87_RS00440at 92.111 kb on - strand, within ABZR87_RS00440at 92.169 kb on + strand, within ABZR87_RS00440at 92.169 kb on + strand, within ABZR87_RS00440at 92.169 kb on + strand, within ABZR87_RS00440at 92.169 kb on + strand, within ABZR87_RS00440at 92.169 kb on + strand, within ABZR87_RS00440at 92.170 kb on - strand, within ABZR87_RS00440at 92.208 kb on + strand, within ABZR87_RS00440at 92.208 kb on + strand, within ABZR87_RS00440at 92.208 kb on + strand, within ABZR87_RS00440at 92.208 kb on + strand, within ABZR87_RS00440at 92.208 kb on + strand, within ABZR87_RS00440at 92.208 kb on + strand, within ABZR87_RS00440at 92.208 kb on + strand, within ABZR87_RS00440at 92.208 kb on + strand, within ABZR87_RS00440at 92.209 kb on - strand, within ABZR87_RS00440at 92.209 kb on - strand, within ABZR87_RS00440at 92.235 kb on + strand, within ABZR87_RS00440at 92.235 kb on + strand, within ABZR87_RS00440at 92.235 kb on + strand, within ABZR87_RS00440at 92.235 kb on + strand, within ABZR87_RS00440at 92.235 kb on + strand, within ABZR87_RS00440at 92.236 kb on - strand, within ABZR87_RS00440at 92.236 kb on - strand, within ABZR87_RS00440at 92.236 kb on - strand, within ABZR87_RS00440at 92.329 kb on + strandat 92.329 kb on + strandat 92.330 kb on - strandat 92.330 kb on - strandat 92.334 kb on + strandat 92.335 kb on - strandat 92.335 kb on - strandat 92.369 kb on - strandat 92.369 kb on - strandat 92.369 kb on - strandat 92.387 kb on + strandat 92.387 kb on + strandat 92.387 kb on + strandat 92.387 kb on + strandat 92.387 kb on + strandat 92.387 kb on + strandat 92.388 kb on - strandat 92.388 kb on - strandat 92.388 kb on - strandat 92.388 kb on - strandat 92.388 kb on - strandat 92.445 kb on - strandat 92.445 kb on - strandat 92.445 kb on - strandat 92.507 kb on + strandat 92.507 kb on + strandat 92.540 kb on + strandat 92.580 kb on + strandat 92.580 kb on + strandat 92.580 kb on + strandat 92.580 kb on + strandat 92.580 kb on + strandat 92.580 kb on + strandat 92.580 kb on + strandat 92.580 kb on + strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.581 kb on - strandat 92.640 kb on - strandat 92.858 kb on + strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.859 kb on - strandat 92.884 kb on + strandat 92.885 kb on - strandat 92.927 kb on - strand, within ABZR87_RS00445

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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88,776 + ABZR87_RS00425 0.60 +0.0
88,777 - ABZR87_RS00425 0.60 +0.6
88,801 - ABZR87_RS00425 0.62 +0.8
88,815 + ABZR87_RS00425 0.63 -0.1
88,815 + ABZR87_RS00425 0.63 +0.7
88,816 - ABZR87_RS00425 0.63 +0.9
88,816 - ABZR87_RS00425 0.63 +0.9
88,962 + ABZR87_RS00425 0.77 +0.8
88,962 + ABZR87_RS00425 0.77 -0.5
88,962 + ABZR87_RS00425 0.77 -0.2
88,963 - ABZR87_RS00425 0.77 -0.1
88,963 - ABZR87_RS00425 0.77 -1.5
89,106 + +0.5
89,107 - +1.5
89,128 - +1.0
89,659 - -0.2
90,137 + ABZR87_RS00435 0.19 -0.8
90,138 - ABZR87_RS00435 0.19 +0.6
90,138 - ABZR87_RS00435 0.19 -0.6
90,379 + ABZR87_RS00435 0.29 -0.4
90,379 + ABZR87_RS00435 0.29 -0.7
90,380 - ABZR87_RS00435 0.29 -2.4
90,427 + ABZR87_RS00435 0.31 -0.8
90,427 + ABZR87_RS00435 0.31 +0.4
90,427 + ABZR87_RS00435 0.31 -0.7
90,427 + ABZR87_RS00435 0.31 -1.5
90,428 - ABZR87_RS00435 0.31 -0.7
90,428 - ABZR87_RS00435 0.31 +0.3
90,543 - ABZR87_RS00435 0.36 +0.0
90,543 - ABZR87_RS00435 0.36 -0.0
90,881 - ABZR87_RS00435 0.51 -1.0
91,018 + ABZR87_RS00435 0.57 -1.7
91,018 + ABZR87_RS00435 0.57 -1.3
91,018 + ABZR87_RS00435 0.57 +1.1
91,018 + ABZR87_RS00435 0.57 -0.6
91,019 - ABZR87_RS00435 0.57 +0.8
91,222 + ABZR87_RS00435 0.66 -0.1
91,223 - ABZR87_RS00435 0.66 +0.3
91,223 - ABZR87_RS00435 0.66 -1.1
91,262 - ABZR87_RS00435 0.68 -1.0
91,262 - ABZR87_RS00435 0.68 -0.5
91,262 - ABZR87_RS00435 0.68 -0.7
91,630 + ABZR87_RS00435 0.84 +0.6
91,630 + ABZR87_RS00435 0.84 -2.0
91,630 + ABZR87_RS00435 0.84 +0.3
91,631 - ABZR87_RS00435 0.84 +1.2
91,631 - ABZR87_RS00435 0.84 -1.5
91,631 - ABZR87_RS00435 0.84 -0.5
91,633 + ABZR87_RS00435 0.84 +0.4
91,633 + ABZR87_RS00435 0.84 -1.4
91,633 + ABZR87_RS00435 0.84 -0.5
91,633 + ABZR87_RS00435 0.84 -0.5
91,633 + ABZR87_RS00435 0.84 -0.6
91,634 - ABZR87_RS00435 0.84 -0.5
91,634 - ABZR87_RS00435 0.84 -1.4
91,634 - ABZR87_RS00435 0.84 +0.2
91,634 - ABZR87_RS00435 0.84 -0.7
91,925 + -1.7
91,926 - +0.0
91,926 - +0.0
92,054 + ABZR87_RS00440 0.17 -1.3
92,054 + ABZR87_RS00440 0.17 -1.1
92,054 + ABZR87_RS00440 0.17 +0.4
92,055 - ABZR87_RS00440 0.18 +0.8
92,091 + ABZR87_RS00440 0.29 -0.6
92,091 + ABZR87_RS00440 0.29 -0.3
92,091 + ABZR87_RS00440 0.29 +0.0
92,091 + ABZR87_RS00440 0.29 +0.7
92,091 + ABZR87_RS00440 0.29 +0.7
92,091 + ABZR87_RS00440 0.29 +1.0
92,091 + ABZR87_RS00440 0.29 +0.6
92,091 + ABZR87_RS00440 0.29 -0.5
92,091 + ABZR87_RS00440 0.29 +0.5
92,091 + ABZR87_RS00440 0.29 -0.0
92,091 + ABZR87_RS00440 0.29 +0.2
92,091 + ABZR87_RS00440 0.29 +1.6
92,092 - ABZR87_RS00440 0.29 -1.0
92,092 - ABZR87_RS00440 0.29 +0.6
92,092 - ABZR87_RS00440 0.29 +0.9
92,092 - ABZR87_RS00440 0.29 +1.2
92,092 - ABZR87_RS00440 0.29 +0.5
92,092 - ABZR87_RS00440 0.29 -1.5
92,092 - ABZR87_RS00440 0.29 +0.1
92,092 - ABZR87_RS00440 0.29 -0.1
92,092 - ABZR87_RS00440 0.29 +0.3
92,092 - ABZR87_RS00440 0.29 -0.3
92,092 - ABZR87_RS00440 0.29 +0.3
92,092 - ABZR87_RS00440 0.29 -0.0
92,095 + ABZR87_RS00440 0.30 +0.2
92,095 + ABZR87_RS00440 0.30 +1.1
92,095 + ABZR87_RS00440 0.30 -0.5
92,095 + ABZR87_RS00440 0.30 +0.8
92,096 - ABZR87_RS00440 0.30 +0.0
92,096 - ABZR87_RS00440 0.30 -0.4
92,110 + ABZR87_RS00440 0.35 -0.5
92,111 - ABZR87_RS00440 0.35 +0.9
92,169 + ABZR87_RS00440 0.53 -1.0
92,169 + ABZR87_RS00440 0.53 +0.0
92,169 + ABZR87_RS00440 0.53 +0.8
92,169 + ABZR87_RS00440 0.53 -0.2
92,169 + ABZR87_RS00440 0.53 +0.0
92,170 - ABZR87_RS00440 0.53 -0.3
92,208 + ABZR87_RS00440 0.65 -0.7
92,208 + ABZR87_RS00440 0.65 -0.2
92,208 + ABZR87_RS00440 0.65 -0.9
92,208 + ABZR87_RS00440 0.65 +1.3
92,208 + ABZR87_RS00440 0.65 +0.8
92,208 + ABZR87_RS00440 0.65 -0.7
92,208 + ABZR87_RS00440 0.65 -1.0
92,208 + ABZR87_RS00440 0.65 +0.5
92,209 - ABZR87_RS00440 0.65 +0.3
92,209 - ABZR87_RS00440 0.65 +0.2
92,235 + ABZR87_RS00440 0.73 +0.1
92,235 + ABZR87_RS00440 0.73 -1.5
92,235 + ABZR87_RS00440 0.73 -0.8
92,235 + ABZR87_RS00440 0.73 +1.1
92,235 + ABZR87_RS00440 0.73 -0.4
92,236 - ABZR87_RS00440 0.73 +0.2
92,236 - ABZR87_RS00440 0.73 +0.3
92,236 - ABZR87_RS00440 0.73 +0.6
92,329 + -0.9
92,329 + +0.2
92,330 - +0.3
92,330 - +0.6
92,334 + -0.6
92,335 - +0.2
92,335 - -0.6
92,369 - +0.8
92,369 - -0.1
92,369 - +0.5
92,387 + +0.7
92,387 + +0.2
92,387 + +0.9
92,387 + -1.1
92,387 + +0.7
92,387 + -0.4
92,388 - -0.7
92,388 - +0.7
92,388 - -0.2
92,388 - +0.0
92,388 - +0.3
92,445 - +1.0
92,445 - +0.9
92,445 - -0.8
92,507 + -1.4
92,507 + -0.8
92,540 + +0.6
92,580 + +0.4
92,580 + -0.1
92,580 + +0.7
92,580 + -0.4
92,580 + +0.3
92,580 + -0.2
92,580 + +0.6
92,580 + -0.4
92,581 - +0.4
92,581 - -0.5
92,581 - -0.6
92,581 - -0.2
92,581 - +0.1
92,581 - +0.8
92,581 - -0.7
92,581 - -2.0
92,581 - -0.3
92,581 - -0.6
92,581 - +0.4
92,581 - -0.3
92,581 - -0.2
92,581 - +0.4
92,581 - +0.8
92,581 - -0.6
92,581 - -1.4
92,581 - -0.9
92,640 - -0.3
92,858 + -0.7
92,859 - +0.2
92,859 - -0.4
92,859 - -0.7
92,884 + -1.0
92,885 - +0.6
92,927 - ABZR87_RS00445 0.13 +0.0

Or see this region's nucleotide sequence