Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00400 and ABZR87_RS00405 overlap by 1 nucleotides ABZR87_RS00405 and ABZR87_RS00410 are separated by 7 nucleotides ABZR87_RS00410 and ABZR87_RS00415 are separated by 3 nucleotides
ABZR87_RS00400: ABZR87_RS00400 - isoleucine--tRNA ligase, at 82,430 to 85,309
_RS00400
ABZR87_RS00405: ABZR87_RS00405 - signal peptidase II, at 85,309 to 85,833
_RS00405
ABZR87_RS00410: ABZR87_RS00410 - DUF4180 domain-containing protein, at 85,841 to 86,218
_RS00410
ABZR87_RS00415: ABZR87_RS00415 - YdcF family protein, at 86,222 to 86,800
_RS00415
Position (kb) 85
86 Strain fitness (log2 ratio) -1
0
1 at 86.057 kb on + strand, within ABZR87_RS00410 at 86.058 kb on - strand, within ABZR87_RS00410 at 86.058 kb on - strand, within ABZR87_RS00410 at 86.058 kb on - strand, within ABZR87_RS00410 at 86.233 kb on - strand at 86.244 kb on + strand at 86.244 kb on + strand at 86.245 kb on - strand at 86.262 kb on + strand at 86.263 kb on - strand at 86.263 kb on - strand at 86.263 kb on - strand at 86.263 kb on - strand at 86.289 kb on + strand, within ABZR87_RS00415 at 86.289 kb on + strand, within ABZR87_RS00415 at 86.289 kb on + strand, within ABZR87_RS00415 at 86.289 kb on + strand, within ABZR87_RS00415 at 86.290 kb on - strand, within ABZR87_RS00415 at 86.327 kb on + strand, within ABZR87_RS00415 at 86.415 kb on - strand, within ABZR87_RS00415 at 86.415 kb on - strand, within ABZR87_RS00415 at 86.415 kb on - strand, within ABZR87_RS00415 at 86.415 kb on - strand, within ABZR87_RS00415 at 86.601 kb on + strand, within ABZR87_RS00415 at 86.602 kb on - strand, within ABZR87_RS00415 at 86.719 kb on + strand, within ABZR87_RS00415 at 86.719 kb on + strand, within ABZR87_RS00415 at 86.719 kb on + strand, within ABZR87_RS00415 at 86.720 kb on - strand, within ABZR87_RS00415 at 86.720 kb on - strand, within ABZR87_RS00415 at 86.720 kb on - strand, within ABZR87_RS00415 at 86.720 kb on - strand, within ABZR87_RS00415 at 86.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 86,057 + ABZR87_RS00410 0.57 -0.6 86,058 - ABZR87_RS00410 0.57 -0.3 86,058 - ABZR87_RS00410 0.57 -0.3 86,058 - ABZR87_RS00410 0.57 +0.1 86,233 - +0.6 86,244 + +1.2 86,244 + +0.5 86,245 - +0.2 86,262 + -1.1 86,263 - +1.1 86,263 - +0.5 86,263 - +0.3 86,263 - -0.1 86,289 + ABZR87_RS00415 0.12 -0.1 86,289 + ABZR87_RS00415 0.12 +0.6 86,289 + ABZR87_RS00415 0.12 +0.6 86,289 + ABZR87_RS00415 0.12 -0.1 86,290 - ABZR87_RS00415 0.12 +1.0 86,327 + ABZR87_RS00415 0.18 +0.1 86,415 - ABZR87_RS00415 0.33 +0.2 86,415 - ABZR87_RS00415 0.33 +0.6 86,415 - ABZR87_RS00415 0.33 -0.0 86,415 - ABZR87_RS00415 0.33 -0.1 86,601 + ABZR87_RS00415 0.65 -0.2 86,602 - ABZR87_RS00415 0.66 -0.1 86,719 + ABZR87_RS00415 0.86 -0.9 86,719 + ABZR87_RS00415 0.86 +0.9 86,719 + ABZR87_RS00415 0.86 -1.0 86,720 - ABZR87_RS00415 0.86 -0.6 86,720 - ABZR87_RS00415 0.86 -0.0 86,720 - ABZR87_RS00415 0.86 -0.1 86,720 - ABZR87_RS00415 0.86 +0.1 86,777 + +0.6
Or see this region's nucleotide sequence