Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00375 and ABZR87_RS00380 overlap by 4 nucleotides ABZR87_RS00380 and ABZR87_RS00385 are separated by 402 nucleotides
ABZR87_RS00375: ABZR87_RS00375 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 76,093 to 77,487
_RS00375
ABZR87_RS00380: ABZR87_RS00380 - phosphoribosylglycinamide formyltransferase, at 77,484 to 78,134
_RS00380
ABZR87_RS00385: ABZR87_RS00385 - response regulator transcription factor, at 78,537 to 79,202
_RS00385
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.603 kb on - strand, within ABZR87_RS00375 at 77.258 kb on + strand, within ABZR87_RS00375 at 77.258 kb on + strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.619 kb on + strand, within ABZR87_RS00380 at 78.145 kb on + strand at 78.146 kb on - strand at 78.325 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.425 kb on - strand at 78.453 kb on + strand at 78.454 kb on - strand at 78.454 kb on - strand at 78.454 kb on - strand at 78.497 kb on + strand at 78.497 kb on + strand at 78.497 kb on + strand at 78.498 kb on - strand at 78.498 kb on - strand at 78.498 kb on - strand at 78.532 kb on + strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.554 kb on + strand at 78.555 kb on - strand at 78.941 kb on + strand, within ABZR87_RS00385 at 78.942 kb on - strand, within ABZR87_RS00385
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 76,598 + ABZR87_RS00375 0.36 +1.9 76,598 + ABZR87_RS00375 0.36 +0.2 76,598 + ABZR87_RS00375 0.36 -0.2 76,599 - ABZR87_RS00375 0.36 +0.3 76,599 - ABZR87_RS00375 0.36 -0.1 76,599 - ABZR87_RS00375 0.36 -0.8 76,599 - ABZR87_RS00375 0.36 +0.6 76,599 - ABZR87_RS00375 0.36 -0.2 76,599 - ABZR87_RS00375 0.36 -0.1 76,603 - ABZR87_RS00375 0.37 -0.2 77,258 + ABZR87_RS00375 0.84 +0.6 77,258 + ABZR87_RS00375 0.84 -0.2 77,259 - ABZR87_RS00375 0.84 +0.2 77,259 - ABZR87_RS00375 0.84 +0.4 77,259 - ABZR87_RS00375 0.84 +0.6 77,259 - ABZR87_RS00375 0.84 -0.8 77,619 + ABZR87_RS00380 0.21 +0.6 78,145 + +1.6 78,146 - -0.3 78,325 + -0.7 78,326 + +0.6 78,326 + +0.8 78,326 + -0.6 78,326 + +0.1 78,326 + -0.7 78,326 + +1.2 78,326 + +0.3 78,326 + +0.2 78,326 + +0.5 78,326 + +0.1 78,326 + -0.4 78,326 + -1.3 78,326 + +2.0 78,327 - -1.5 78,327 - -0.4 78,327 - -1.6 78,327 - -0.8 78,327 - -2.8 78,327 - -2.5 78,327 - -2.5 78,425 - -2.4 78,453 + +1.6 78,454 - -3.0 78,454 - -2.3 78,454 - -2.7 78,497 + +0.0 78,497 + +0.9 78,497 + +0.3 78,498 - -2.9 78,498 - -2.9 78,498 - +0.6 78,532 + -0.3 78,533 - -1.9 78,533 - -2.1 78,533 - -2.9 78,533 - -1.5 78,554 + -1.2 78,555 - -2.6 78,941 + ABZR87_RS00385 0.61 -1.2 78,942 - ABZR87_RS00385 0.61 -2.7
Or see this region's nucleotide sequence