Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00330 and ABZR87_RS00335 are separated by 180 nucleotides ABZR87_RS00335 and ABZR87_RS00340 are separated by 13 nucleotides ABZR87_RS00340 and ABZR87_RS00345 are separated by 177 nucleotides
ABZR87_RS00330: ABZR87_RS00330 - DNA repair protein RadC, at 67,271 to 67,945
_RS00330
ABZR87_RS00335: ABZR87_RS00335 - 50S ribosomal protein L28, at 68,126 to 68,359
_RS00335
ABZR87_RS00340: ABZR87_RS00340 - 50S ribosomal protein L33, at 68,373 to 68,543
_RS00340
ABZR87_RS00345: ABZR87_RS00345 - L-aspartate oxidase, at 68,721 to 70,322
_RS00345
Position (kb) 68
69 Strain fitness (log2 ratio) -2
-1
0
1 at 67.505 kb on + strand, within ABZR87_RS00330 at 67.505 kb on + strand, within ABZR87_RS00330 at 67.505 kb on + strand, within ABZR87_RS00330 at 67.505 kb on + strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.659 kb on + strand, within ABZR87_RS00330 at 67.659 kb on + strand, within ABZR87_RS00330 at 67.659 kb on + strand, within ABZR87_RS00330 at 67.660 kb on - strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.666 kb on - strand, within ABZR87_RS00330 at 67.666 kb on - strand, within ABZR87_RS00330 at 67.666 kb on - strand, within ABZR87_RS00330 at 67.916 kb on + strand at 67.916 kb on + strand at 67.917 kb on - strand at 67.917 kb on - strand at 68.357 kb on + strand at 68.358 kb on - strand at 68.362 kb on - strand at 68.362 kb on - strand at 68.368 kb on + strand at 68.368 kb on + strand at 68.368 kb on + strand at 68.369 kb on - strand at 68.423 kb on + strand, within ABZR87_RS00340 at 68.424 kb on - strand, within ABZR87_RS00340 at 68.521 kb on - strand, within ABZR87_RS00340 at 68.521 kb on - strand, within ABZR87_RS00340 at 68.541 kb on + strand at 68.541 kb on + strand at 68.542 kb on - strand at 68.542 kb on - strand at 68.542 kb on - strand at 68.542 kb on - strand at 68.542 kb on - strand at 68.646 kb on + strand at 68.683 kb on + strand at 68.683 kb on + strand at 68.683 kb on + strand at 68.684 kb on - strand at 68.783 kb on - strand at 68.783 kb on - strand at 68.955 kb on + strand, within ABZR87_RS00345 at 68.955 kb on + strand, within ABZR87_RS00345 at 68.955 kb on + strand, within ABZR87_RS00345 at 68.955 kb on + strand, within ABZR87_RS00345 at 68.955 kb on + strand, within ABZR87_RS00345 at 68.956 kb on - strand, within ABZR87_RS00345 at 69.279 kb on - strand, within ABZR87_RS00345 at 69.279 kb on - strand, within ABZR87_RS00345 at 69.324 kb on + strand, within ABZR87_RS00345 at 69.324 kb on + strand, within ABZR87_RS00345 at 69.324 kb on + strand, within ABZR87_RS00345 at 69.324 kb on + strand, within ABZR87_RS00345 at 69.324 kb on + strand, within ABZR87_RS00345 at 69.324 kb on + strand, within ABZR87_RS00345 at 69.325 kb on - strand, within ABZR87_RS00345 at 69.325 kb on - strand, within ABZR87_RS00345 at 69.325 kb on - strand, within ABZR87_RS00345 at 69.325 kb on - strand, within ABZR87_RS00345 at 69.325 kb on - strand, within ABZR87_RS00345 at 69.325 kb on - strand, within ABZR87_RS00345 at 69.325 kb on - strand, within ABZR87_RS00345 at 69.330 kb on + strand, within ABZR87_RS00345 at 69.330 kb on + strand, within ABZR87_RS00345 at 69.331 kb on - strand, within ABZR87_RS00345 at 69.331 kb on - strand, within ABZR87_RS00345 at 69.331 kb on - strand, within ABZR87_RS00345 at 69.331 kb on - strand, within ABZR87_RS00345 at 69.332 kb on + strand, within ABZR87_RS00345 at 69.333 kb on - strand, within ABZR87_RS00345 at 69.333 kb on - strand, within ABZR87_RS00345 at 69.333 kb on - strand, within ABZR87_RS00345 at 69.333 kb on - strand, within ABZR87_RS00345 at 69.333 kb on - strand, within ABZR87_RS00345 at 69.438 kb on + strand, within ABZR87_RS00345 at 69.438 kb on + strand, within ABZR87_RS00345 at 69.439 kb on - strand, within ABZR87_RS00345
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 67,505 + ABZR87_RS00330 0.35 +0.2 67,505 + ABZR87_RS00330 0.35 -2.1 67,505 + ABZR87_RS00330 0.35 +0.4 67,505 + ABZR87_RS00330 0.35 +0.8 67,506 - ABZR87_RS00330 0.35 +0.0 67,506 - ABZR87_RS00330 0.35 +1.6 67,506 - ABZR87_RS00330 0.35 -1.1 67,506 - ABZR87_RS00330 0.35 -0.1 67,659 + ABZR87_RS00330 0.57 -0.3 67,659 + ABZR87_RS00330 0.57 +1.1 67,659 + ABZR87_RS00330 0.57 -0.6 67,660 - ABZR87_RS00330 0.58 -0.1 67,665 + ABZR87_RS00330 0.58 -0.4 67,665 + ABZR87_RS00330 0.58 +0.7 67,665 + ABZR87_RS00330 0.58 -0.4 67,665 + ABZR87_RS00330 0.58 -0.8 67,665 + ABZR87_RS00330 0.58 +0.0 67,665 + ABZR87_RS00330 0.58 +0.9 67,665 + ABZR87_RS00330 0.58 +0.6 67,665 + ABZR87_RS00330 0.58 -0.6 67,665 + ABZR87_RS00330 0.58 -0.2 67,665 + ABZR87_RS00330 0.58 +0.3 67,666 - ABZR87_RS00330 0.59 -0.9 67,666 - ABZR87_RS00330 0.59 -1.0 67,666 - ABZR87_RS00330 0.59 -0.5 67,916 + +0.3 67,916 + -0.8 67,917 - -2.3 67,917 - +0.8 68,357 + -0.3 68,358 - -0.3 68,362 - +0.0 68,362 - -0.7 68,368 + +0.1 68,368 + -1.3 68,368 + -1.4 68,369 - -0.6 68,423 + ABZR87_RS00340 0.29 -1.2 68,424 - ABZR87_RS00340 0.30 -0.2 68,521 - ABZR87_RS00340 0.87 -0.3 68,521 - ABZR87_RS00340 0.87 -0.9 68,541 + +0.4 68,541 + -0.8 68,542 - -0.3 68,542 - +0.6 68,542 - -0.4 68,542 - -0.8 68,542 - -0.1 68,646 + -1.6 68,683 + +0.6 68,683 + -1.2 68,683 + +0.3 68,684 - +0.6 68,783 - +0.4 68,783 - -0.1 68,955 + ABZR87_RS00345 0.15 +0.3 68,955 + ABZR87_RS00345 0.15 -0.8 68,955 + ABZR87_RS00345 0.15 +0.3 68,955 + ABZR87_RS00345 0.15 +1.0 68,955 + ABZR87_RS00345 0.15 -0.5 68,956 - ABZR87_RS00345 0.15 +0.1 69,279 - ABZR87_RS00345 0.35 -1.0 69,279 - ABZR87_RS00345 0.35 -0.1 69,324 + ABZR87_RS00345 0.38 -0.2 69,324 + ABZR87_RS00345 0.38 -0.0 69,324 + ABZR87_RS00345 0.38 +0.2 69,324 + ABZR87_RS00345 0.38 +0.2 69,324 + ABZR87_RS00345 0.38 +0.4 69,324 + ABZR87_RS00345 0.38 -0.0 69,325 - ABZR87_RS00345 0.38 -0.1 69,325 - ABZR87_RS00345 0.38 -0.0 69,325 - ABZR87_RS00345 0.38 +0.2 69,325 - ABZR87_RS00345 0.38 +0.3 69,325 - ABZR87_RS00345 0.38 -1.0 69,325 - ABZR87_RS00345 0.38 -0.4 69,325 - ABZR87_RS00345 0.38 +0.6 69,330 + ABZR87_RS00345 0.38 +0.3 69,330 + ABZR87_RS00345 0.38 -0.6 69,331 - ABZR87_RS00345 0.38 +0.6 69,331 - ABZR87_RS00345 0.38 -0.2 69,331 - ABZR87_RS00345 0.38 +0.5 69,331 - ABZR87_RS00345 0.38 -0.5 69,332 + ABZR87_RS00345 0.38 -0.6 69,333 - ABZR87_RS00345 0.38 +0.0 69,333 - ABZR87_RS00345 0.38 -0.1 69,333 - ABZR87_RS00345 0.38 -0.4 69,333 - ABZR87_RS00345 0.38 -0.2 69,333 - ABZR87_RS00345 0.38 +0.0 69,438 + ABZR87_RS00345 0.45 -0.2 69,438 + ABZR87_RS00345 0.45 +0.4 69,439 - ABZR87_RS00345 0.45 -0.1
Or see this region's nucleotide sequence