Experiment: 4-Hydroxybenzoic Acid 5 mM in soil extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000803 and ABIE53_000804 are separated by 34 nucleotides ABIE53_000804 and ABIE53_000805 are separated by 44 nucleotides ABIE53_000805 and ABIE53_000806 are separated by 40 nucleotides ABIE53_000806 and ABIE53_000807 are separated by 10 nucleotides
ABIE53_000803: ABIE53_000803 - lactoylglutathione lyase, at 871,995 to 872,381
_000803
ABIE53_000804: ABIE53_000804 - putative metal-dependent hydrolase, at 872,416 to 873,285
_000804
ABIE53_000805: ABIE53_000805 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 873,330 to 874,088
_000805
ABIE53_000806: ABIE53_000806 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase, at 874,129 to 874,683
_000806
ABIE53_000807: ABIE53_000807 - glycyl-tRNA synthetase beta chain, at 874,694 to 876,796
_000807
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1
2 at 872.349 kb on + strand at 872.350 kb on - strand at 872.350 kb on - strand at 872.379 kb on + strand at 872.379 kb on + strand at 872.379 kb on + strand at 872.379 kb on + strand at 872.379 kb on + strand at 872.379 kb on + strand at 872.380 kb on - strand at 872.380 kb on - strand at 872.380 kb on - strand at 872.380 kb on - strand at 872.398 kb on + strand at 872.398 kb on + strand at 872.399 kb on - strand at 872.399 kb on - strand at 872.543 kb on + strand, within ABIE53_000804 at 872.543 kb on + strand, within ABIE53_000804 at 872.543 kb on + strand, within ABIE53_000804 at 872.543 kb on + strand, within ABIE53_000804 at 872.543 kb on + strand, within ABIE53_000804 at 872.543 kb on + strand, within ABIE53_000804 at 872.544 kb on - strand, within ABIE53_000804 at 872.544 kb on - strand, within ABIE53_000804 at 872.551 kb on - strand, within ABIE53_000804 at 872.645 kb on + strand, within ABIE53_000804 at 872.654 kb on + strand, within ABIE53_000804 at 872.654 kb on + strand, within ABIE53_000804 at 872.654 kb on + strand, within ABIE53_000804 at 872.654 kb on + strand, within ABIE53_000804 at 872.655 kb on - strand, within ABIE53_000804 at 872.655 kb on - strand, within ABIE53_000804 at 872.679 kb on - strand, within ABIE53_000804 at 872.679 kb on - strand, within ABIE53_000804 at 873.077 kb on + strand, within ABIE53_000804 at 873.078 kb on - strand, within ABIE53_000804 at 873.171 kb on + strand, within ABIE53_000804 at 873.171 kb on + strand, within ABIE53_000804 at 873.171 kb on + strand, within ABIE53_000804 at 873.271 kb on - strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.306 kb on + strand at 873.306 kb on + strand at 873.306 kb on + strand at 873.307 kb on - strand at 873.307 kb on - strand at 873.497 kb on - strand, within ABIE53_000805 at 873.776 kb on - strand, within ABIE53_000805 at 873.799 kb on + strand, within ABIE53_000805 at 873.799 kb on + strand, within ABIE53_000805 at 873.799 kb on + strand, within ABIE53_000805 at 873.800 kb on - strand, within ABIE53_000805 at 873.914 kb on - strand, within ABIE53_000805 at 874.044 kb on + strand at 874.055 kb on - strand at 874.055 kb on - strand at 874.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM in soil extract remove 872,349 + -0.7 872,350 - -0.6 872,350 - +0.6 872,379 + +0.3 872,379 + -0.2 872,379 + -0.1 872,379 + -1.8 872,379 + -0.4 872,379 + -0.2 872,380 - -1.1 872,380 - +0.0 872,380 - +1.9 872,380 - +1.5 872,398 + +0.3 872,398 + +0.1 872,399 - +0.1 872,399 - -1.6 872,543 + ABIE53_000804 0.15 +0.1 872,543 + ABIE53_000804 0.15 +1.5 872,543 + ABIE53_000804 0.15 +0.5 872,543 + ABIE53_000804 0.15 -0.3 872,543 + ABIE53_000804 0.15 -0.8 872,543 + ABIE53_000804 0.15 +0.8 872,544 - ABIE53_000804 0.15 -0.0 872,544 - ABIE53_000804 0.15 +0.5 872,551 - ABIE53_000804 0.16 +1.1 872,645 + ABIE53_000804 0.26 -0.0 872,654 + ABIE53_000804 0.27 +0.1 872,654 + ABIE53_000804 0.27 -0.9 872,654 + ABIE53_000804 0.27 -2.1 872,654 + ABIE53_000804 0.27 -1.3 872,655 - ABIE53_000804 0.27 -0.5 872,655 - ABIE53_000804 0.27 -0.5 872,679 - ABIE53_000804 0.30 +0.3 872,679 - ABIE53_000804 0.30 -0.8 873,077 + ABIE53_000804 0.76 +0.5 873,078 - ABIE53_000804 0.76 +0.9 873,171 + ABIE53_000804 0.87 +1.9 873,171 + ABIE53_000804 0.87 +1.9 873,171 + ABIE53_000804 0.87 -1.3 873,271 - +0.3 873,271 - +1.9 873,271 - +1.8 873,271 - -0.0 873,306 + +0.2 873,306 + +0.2 873,306 + +0.6 873,307 - -0.9 873,307 - -0.6 873,497 - ABIE53_000805 0.22 -0.7 873,776 - ABIE53_000805 0.59 +0.6 873,799 + ABIE53_000805 0.62 -0.6 873,799 + ABIE53_000805 0.62 +1.3 873,799 + ABIE53_000805 0.62 -0.1 873,800 - ABIE53_000805 0.62 +0.3 873,914 - ABIE53_000805 0.77 +1.1 874,044 + +0.3 874,055 - -0.7 874,055 - +1.9 874,055 - -0.9
Or see this region's nucleotide sequence