Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07640 and PGA1_c07650 are separated by 175 nucleotides PGA1_c07650 and PGA1_c07660 are separated by 378 nucleotides PGA1_c07660 and PGA1_c07670 are separated by 438 nucleotides
PGA1_c07640: PGA1_c07640 - O-acetylhomoserine / O-acetylserine sulfhydrylase, at 791,541 to 792,833
_c07640
PGA1_c07650: PGA1_c07650 - hypothetical protein, at 793,009 to 793,998
_c07650
PGA1_c07660: PGA1_c07660 - tRNA-Thr, at 794,377 to 794,452
_c07660
PGA1_c07670: PGA1_c07670 - two component regulatory sytem, at 794,891 to 796,633
_c07670
Position (kb) 793
794 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 792.026 kb on + strand, within PGA1_c07640 at 792.041 kb on + strand, within PGA1_c07640 at 792.049 kb on + strand, within PGA1_c07640 at 792.086 kb on + strand, within PGA1_c07640 at 792.094 kb on - strand, within PGA1_c07640 at 792.100 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.114 kb on - strand, within PGA1_c07640 at 792.227 kb on + strand, within PGA1_c07640 at 792.261 kb on + strand, within PGA1_c07640 at 792.265 kb on - strand, within PGA1_c07640 at 792.346 kb on + strand, within PGA1_c07640 at 792.346 kb on + strand, within PGA1_c07640 at 792.374 kb on + strand, within PGA1_c07640 at 792.412 kb on + strand, within PGA1_c07640 at 792.412 kb on + strand, within PGA1_c07640 at 792.413 kb on + strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.421 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.555 kb on + strand, within PGA1_c07640 at 792.563 kb on - strand, within PGA1_c07640 at 792.585 kb on - strand, within PGA1_c07640 at 792.631 kb on - strand, within PGA1_c07640 at 792.631 kb on - strand, within PGA1_c07640 at 792.648 kb on + strand, within PGA1_c07640 at 792.765 kb on + strand at 792.810 kb on + strand at 792.831 kb on + strand at 792.831 kb on + strand at 792.839 kb on + strand at 792.844 kb on + strand at 792.844 kb on + strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.887 kb on + strand at 792.893 kb on - strand at 792.893 kb on - strand at 792.907 kb on - strand at 792.943 kb on - strand at 792.950 kb on + strand at 792.977 kb on + strand at 792.983 kb on - strand at 793.066 kb on + strand at 793.106 kb on + strand at 793.167 kb on + strand, within PGA1_c07650 at 793.167 kb on + strand, within PGA1_c07650 at 793.175 kb on - strand, within PGA1_c07650 at 793.177 kb on + strand, within PGA1_c07650 at 793.192 kb on - strand, within PGA1_c07650 at 793.220 kb on + strand, within PGA1_c07650 at 793.220 kb on + strand, within PGA1_c07650 at 793.228 kb on - strand, within PGA1_c07650 at 793.258 kb on - strand, within PGA1_c07650 at 793.335 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.427 kb on - strand, within PGA1_c07650 at 793.446 kb on - strand, within PGA1_c07650 at 793.493 kb on + strand, within PGA1_c07650 at 793.503 kb on + strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.553 kb on - strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.659 kb on + strand, within PGA1_c07650 at 793.703 kb on + strand, within PGA1_c07650 at 793.733 kb on - strand, within PGA1_c07650 at 793.745 kb on + strand, within PGA1_c07650 at 793.753 kb on - strand, within PGA1_c07650 at 793.755 kb on + strand, within PGA1_c07650 at 793.758 kb on - strand, within PGA1_c07650 at 793.801 kb on + strand, within PGA1_c07650 at 793.855 kb on - strand, within PGA1_c07650 at 793.864 kb on - strand, within PGA1_c07650 at 793.882 kb on + strand, within PGA1_c07650 at 793.885 kb on - strand, within PGA1_c07650 at 793.911 kb on + strand at 793.923 kb on - strand at 793.952 kb on + strand at 793.952 kb on + strand at 794.023 kb on - strand at 794.037 kb on - strand at 794.042 kb on - strand at 794.051 kb on + strand at 794.056 kb on + strand at 794.056 kb on + strand at 794.056 kb on + strand at 794.095 kb on + strand at 794.113 kb on + strand at 794.121 kb on - strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.252 kb on + strand at 794.253 kb on + strand at 794.552 kb on - strand at 794.568 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.646 kb on - strand at 794.652 kb on + strand at 794.662 kb on + strand at 794.665 kb on + strand at 794.695 kb on - strand at 794.731 kb on + strand at 794.752 kb on + strand at 794.760 kb on - strand at 794.804 kb on + strand at 794.804 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.857 kb on + strand at 794.857 kb on + strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.954 kb on - strand at 794.954 kb on - strand at 794.955 kb on + strand at 794.960 kb on + strand at 794.968 kb on - strand at 794.982 kb on + strand at 794.988 kb on + strand at 794.992 kb on + strand at 794.995 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 792,026 + PGA1_c07640 0.38 -0.1 792,041 + PGA1_c07640 0.39 -0.2 792,049 + PGA1_c07640 0.39 +0.8 792,086 + PGA1_c07640 0.42 +0.6 792,094 - PGA1_c07640 0.43 -0.0 792,100 + PGA1_c07640 0.43 +0.2 792,106 + PGA1_c07640 0.44 +0.4 792,106 + PGA1_c07640 0.44 +3.0 792,106 + PGA1_c07640 0.44 +0.3 792,106 + PGA1_c07640 0.44 +0.4 792,106 + PGA1_c07640 0.44 -0.6 792,106 + PGA1_c07640 0.44 +0.4 792,106 + PGA1_c07640 0.44 +0.6 792,114 - PGA1_c07640 0.44 -0.4 792,227 + PGA1_c07640 0.53 +0.3 792,261 + PGA1_c07640 0.56 +0.5 792,265 - PGA1_c07640 0.56 -0.2 792,346 + PGA1_c07640 0.62 +0.8 792,346 + PGA1_c07640 0.62 +2.2 792,374 + PGA1_c07640 0.64 +0.6 792,412 + PGA1_c07640 0.67 +2.1 792,412 + PGA1_c07640 0.67 +0.6 792,413 + PGA1_c07640 0.67 -1.1 792,420 - PGA1_c07640 0.68 +0.7 792,420 - PGA1_c07640 0.68 +0.3 792,420 - PGA1_c07640 0.68 +0.2 792,420 - PGA1_c07640 0.68 +0.7 792,420 - PGA1_c07640 0.68 -1.6 792,420 - PGA1_c07640 0.68 +0.1 792,421 - PGA1_c07640 0.68 +0.3 792,487 - PGA1_c07640 0.73 +1.0 792,487 - PGA1_c07640 0.73 -0.6 792,487 - PGA1_c07640 0.73 +1.0 792,487 - PGA1_c07640 0.73 -0.2 792,555 + PGA1_c07640 0.78 -0.8 792,563 - PGA1_c07640 0.79 +1.3 792,585 - PGA1_c07640 0.81 -0.6 792,631 - PGA1_c07640 0.84 -0.7 792,631 - PGA1_c07640 0.84 +0.4 792,648 + PGA1_c07640 0.86 +0.2 792,765 + -0.4 792,810 + -1.9 792,831 + +1.0 792,831 + +0.5 792,839 + -0.3 792,844 + +0.9 792,844 + +0.3 792,852 - -1.3 792,852 - -0.0 792,852 - +0.2 792,852 - -0.8 792,887 + +0.3 792,893 - -0.4 792,893 - -0.6 792,907 - -0.0 792,943 - -0.2 792,950 + +0.6 792,977 + -0.7 792,983 - -0.9 793,066 + +1.0 793,106 + -0.6 793,167 + PGA1_c07650 0.16 +1.4 793,167 + PGA1_c07650 0.16 -1.2 793,175 - PGA1_c07650 0.17 +0.1 793,177 + PGA1_c07650 0.17 -0.1 793,192 - PGA1_c07650 0.18 +0.7 793,220 + PGA1_c07650 0.21 +1.4 793,220 + PGA1_c07650 0.21 +0.6 793,228 - PGA1_c07650 0.22 -0.2 793,258 - PGA1_c07650 0.25 +1.1 793,335 + PGA1_c07650 0.33 +0.1 793,419 + PGA1_c07650 0.41 +0.7 793,419 + PGA1_c07650 0.41 +1.1 793,419 + PGA1_c07650 0.41 -1.4 793,427 - PGA1_c07650 0.42 +0.2 793,446 - PGA1_c07650 0.44 +0.7 793,493 + PGA1_c07650 0.49 -0.5 793,503 + PGA1_c07650 0.50 +0.4 793,511 - PGA1_c07650 0.51 +1.1 793,511 - PGA1_c07650 0.51 -0.6 793,511 - PGA1_c07650 0.51 +0.4 793,511 - PGA1_c07650 0.51 +0.7 793,511 - PGA1_c07650 0.51 -0.2 793,511 - PGA1_c07650 0.51 -2.5 793,553 - PGA1_c07650 0.55 -1.0 793,566 + PGA1_c07650 0.56 +0.1 793,566 + PGA1_c07650 0.56 -0.6 793,566 + PGA1_c07650 0.56 +1.6 793,659 + PGA1_c07650 0.66 +0.5 793,703 + PGA1_c07650 0.70 +0.4 793,733 - PGA1_c07650 0.73 +1.2 793,745 + PGA1_c07650 0.74 +0.7 793,753 - PGA1_c07650 0.75 -0.6 793,755 + PGA1_c07650 0.75 +0.4 793,758 - PGA1_c07650 0.76 +0.8 793,801 + PGA1_c07650 0.80 +1.2 793,855 - PGA1_c07650 0.85 +0.4 793,864 - PGA1_c07650 0.86 +0.5 793,882 + PGA1_c07650 0.88 -0.3 793,885 - PGA1_c07650 0.88 -0.1 793,911 + +2.0 793,923 - -0.3 793,952 + -0.8 793,952 + +0.3 794,023 - +0.4 794,037 - -2.3 794,042 - +0.3 794,051 + -0.4 794,056 + +0.1 794,056 + +0.6 794,056 + +0.7 794,095 + +0.7 794,113 + +0.4 794,121 - +1.6 794,149 + +0.6 794,149 + +1.2 794,149 + -0.5 794,149 + -0.1 794,149 + +0.2 794,149 + -1.8 794,157 - +0.1 794,157 - +0.2 794,157 - -1.0 794,157 - -0.6 794,157 - -1.7 794,157 - -2.1 794,157 - +0.1 794,157 - +1.4 794,157 - +0.8 794,252 + +0.0 794,253 + +1.5 794,552 - +0.1 794,568 + +0.2 794,638 + +0.6 794,638 + +0.7 794,638 + +0.4 794,638 + +0.9 794,638 + +1.1 794,646 - -0.1 794,652 + +0.6 794,662 + -0.2 794,665 + +0.4 794,695 - -0.7 794,731 + -0.1 794,752 + +0.9 794,760 - -0.3 794,804 + -0.3 794,804 + -0.4 794,835 + +0.5 794,835 + +0.5 794,835 + -1.2 794,835 + -0.9 794,835 + +1.1 794,835 + +2.2 794,835 + +0.9 794,835 + -0.0 794,843 - -0.5 794,843 - +0.8 794,843 - +0.7 794,843 - +0.1 794,843 - +0.7 794,843 - -0.7 794,843 - -1.2 794,857 + +1.7 794,857 + -0.2 794,865 - -0.6 794,865 - -0.1 794,865 - -2.1 794,865 - +0.6 794,865 - +0.7 794,954 - +0.2 794,954 - +0.2 794,955 + -0.6 794,960 + +0.3 794,968 - -0.3 794,982 + -0.8 794,988 + +2.2 794,992 + +0.0 794,995 - +0.1 794,996 - -1.0 794,996 - +0.9 794,996 - -0.0
Or see this region's nucleotide sequence