Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04600

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04590 and PGA1_c04600 overlap by 4 nucleotidesPGA1_c04600 and PGA1_c04610 are separated by 181 nucleotides PGA1_c04590: PGA1_c04590 - putative threonine dehydratase, at 452,579 to 453,553 _c04590 PGA1_c04600: PGA1_c04600 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 453,550 to 454,239 _c04600 PGA1_c04610: PGA1_c04610 - haloacid dehalogenase, type II, at 454,421 to 455,107 _c04610 Position (kb) 453 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 452.565 kb on - strandat 452.570 kb on + strandat 452.588 kb on - strandat 452.616 kb on + strandat 452.619 kb on - strandat 452.624 kb on - strandat 452.668 kb on - strandat 452.671 kb on - strandat 452.673 kb on + strandat 452.691 kb on - strand, within PGA1_c04590at 452.693 kb on + strand, within PGA1_c04590at 452.724 kb on + strand, within PGA1_c04590at 452.741 kb on + strand, within PGA1_c04590at 452.749 kb on - strand, within PGA1_c04590at 452.754 kb on - strand, within PGA1_c04590at 452.754 kb on - strand, within PGA1_c04590at 452.850 kb on + strand, within PGA1_c04590at 452.975 kb on - strand, within PGA1_c04590at 453.020 kb on + strand, within PGA1_c04590at 453.076 kb on + strand, within PGA1_c04590at 453.079 kb on - strand, within PGA1_c04590at 453.081 kb on + strand, within PGA1_c04590at 453.103 kb on - strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.130 kb on + strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.138 kb on - strand, within PGA1_c04590at 453.175 kb on - strand, within PGA1_c04590at 453.213 kb on - strand, within PGA1_c04590at 453.303 kb on + strand, within PGA1_c04590at 453.303 kb on + strand, within PGA1_c04590at 453.303 kb on + strand, within PGA1_c04590at 453.309 kb on + strand, within PGA1_c04590at 453.311 kb on - strand, within PGA1_c04590at 453.311 kb on - strand, within PGA1_c04590at 453.311 kb on - strand, within PGA1_c04590at 453.311 kb on - strand, within PGA1_c04590at 453.313 kb on + strand, within PGA1_c04590at 453.347 kb on + strand, within PGA1_c04590at 453.393 kb on + strand, within PGA1_c04590at 453.432 kb on + strand, within PGA1_c04590at 453.432 kb on + strand, within PGA1_c04590at 453.432 kb on + strand, within PGA1_c04590at 453.440 kb on - strand, within PGA1_c04590at 453.440 kb on - strand, within PGA1_c04590at 453.440 kb on - strand, within PGA1_c04590at 453.440 kb on - strand, within PGA1_c04590at 453.440 kb on - strand, within PGA1_c04590at 453.518 kb on + strandat 453.518 kb on + strandat 453.518 kb on + strandat 453.576 kb on + strandat 453.585 kb on + strandat 453.590 kb on + strandat 453.591 kb on + strandat 453.625 kb on + strand, within PGA1_c04600at 453.634 kb on + strand, within PGA1_c04600at 453.699 kb on - strand, within PGA1_c04600at 453.699 kb on - strand, within PGA1_c04600at 453.813 kb on - strand, within PGA1_c04600at 453.823 kb on + strand, within PGA1_c04600at 453.828 kb on + strand, within PGA1_c04600at 453.942 kb on + strand, within PGA1_c04600at 453.980 kb on + strand, within PGA1_c04600at 454.081 kb on + strand, within PGA1_c04600at 454.156 kb on - strand, within PGA1_c04600at 454.165 kb on + strand, within PGA1_c04600at 454.170 kb on + strand, within PGA1_c04600at 454.208 kb on - strandat 454.208 kb on - strandat 454.220 kb on + strandat 454.291 kb on + strandat 454.358 kb on - strandat 454.362 kb on + strandat 454.370 kb on - strandat 454.371 kb on + strandat 454.371 kb on + strandat 454.381 kb on + strandat 454.381 kb on + strandat 454.389 kb on - strandat 454.413 kb on + strandat 454.421 kb on - strandat 454.421 kb on - strandat 454.451 kb on - strandat 454.451 kb on - strandat 454.456 kb on - strandat 454.457 kb on + strandat 454.463 kb on + strandat 454.484 kb on - strandat 454.622 kb on + strand, within PGA1_c04610at 454.628 kb on + strand, within PGA1_c04610at 454.630 kb on - strand, within PGA1_c04610at 454.631 kb on - strand, within PGA1_c04610at 454.631 kb on - strand, within PGA1_c04610at 454.631 kb on - strand, within PGA1_c04610at 454.716 kb on + strand, within PGA1_c04610at 454.747 kb on + strand, within PGA1_c04610at 454.752 kb on + strand, within PGA1_c04610at 454.755 kb on - strand, within PGA1_c04610at 454.755 kb on - strand, within PGA1_c04610at 454.765 kb on - strand, within PGA1_c04610at 454.765 kb on - strand, within PGA1_c04610at 454.765 kb on - strand, within PGA1_c04610at 454.770 kb on + strand, within PGA1_c04610at 454.806 kb on - strand, within PGA1_c04610at 454.808 kb on + strand, within PGA1_c04610at 454.808 kb on + strand, within PGA1_c04610at 454.808 kb on + strand, within PGA1_c04610at 454.808 kb on + strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.857 kb on - strand, within PGA1_c04610at 454.887 kb on - strand, within PGA1_c04610at 454.897 kb on - strand, within PGA1_c04610at 454.897 kb on - strand, within PGA1_c04610at 454.929 kb on + strand, within PGA1_c04610at 454.934 kb on + strand, within PGA1_c04610at 454.942 kb on + strand, within PGA1_c04610at 454.963 kb on - strand, within PGA1_c04610at 454.982 kb on - strand, within PGA1_c04610at 454.988 kb on - strand, within PGA1_c04610at 455.011 kb on + strand, within PGA1_c04610at 455.087 kb on + strandat 455.112 kb on - strandat 455.135 kb on - strandat 455.144 kb on - strandat 455.207 kb on + strandat 455.215 kb on - strandat 455.215 kb on - strandat 455.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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452,565 - -1.4
452,570 + -0.2
452,588 - +0.1
452,616 + -0.9
452,619 - +1.4
452,624 - +0.4
452,668 - +0.3
452,671 - -1.4
452,673 + +0.0
452,691 - PGA1_c04590 0.11 -1.6
452,693 + PGA1_c04590 0.12 +0.4
452,724 + PGA1_c04590 0.15 -0.3
452,741 + PGA1_c04590 0.17 +0.6
452,749 - PGA1_c04590 0.17 -0.5
452,754 - PGA1_c04590 0.18 +0.0
452,754 - PGA1_c04590 0.18 -0.2
452,850 + PGA1_c04590 0.28 -1.4
452,975 - PGA1_c04590 0.41 -0.7
453,020 + PGA1_c04590 0.45 +0.6
453,076 + PGA1_c04590 0.51 +1.1
453,079 - PGA1_c04590 0.51 -0.1
453,081 + PGA1_c04590 0.51 +0.4
453,103 - PGA1_c04590 0.54 +0.4
453,130 + PGA1_c04590 0.57 +1.1
453,130 + PGA1_c04590 0.57 +0.6
453,130 + PGA1_c04590 0.57 +0.3
453,130 + PGA1_c04590 0.57 +0.1
453,130 + PGA1_c04590 0.57 -0.2
453,130 + PGA1_c04590 0.57 +1.0
453,130 + PGA1_c04590 0.57 -0.3
453,130 + PGA1_c04590 0.57 -0.2
453,130 + PGA1_c04590 0.57 +1.9
453,130 + PGA1_c04590 0.57 +1.7
453,130 + PGA1_c04590 0.57 +0.9
453,130 + PGA1_c04590 0.57 +0.4
453,130 + PGA1_c04590 0.57 -0.8
453,130 + PGA1_c04590 0.57 +1.3
453,130 + PGA1_c04590 0.57 +0.5
453,138 - PGA1_c04590 0.57 +0.2
453,138 - PGA1_c04590 0.57 -0.5
453,138 - PGA1_c04590 0.57 -1.7
453,138 - PGA1_c04590 0.57 +1.2
453,138 - PGA1_c04590 0.57 +0.0
453,138 - PGA1_c04590 0.57 +0.5
453,138 - PGA1_c04590 0.57 +1.0
453,138 - PGA1_c04590 0.57 -0.7
453,138 - PGA1_c04590 0.57 -1.3
453,138 - PGA1_c04590 0.57 -0.3
453,138 - PGA1_c04590 0.57 +0.9
453,138 - PGA1_c04590 0.57 +1.3
453,138 - PGA1_c04590 0.57 +0.5
453,175 - PGA1_c04590 0.61 -0.0
453,213 - PGA1_c04590 0.65 -1.0
453,303 + PGA1_c04590 0.74 -2.9
453,303 + PGA1_c04590 0.74 -0.7
453,303 + PGA1_c04590 0.74 -1.2
453,309 + PGA1_c04590 0.75 -0.3
453,311 - PGA1_c04590 0.75 +1.2
453,311 - PGA1_c04590 0.75 +0.1
453,311 - PGA1_c04590 0.75 +1.3
453,311 - PGA1_c04590 0.75 +0.2
453,313 + PGA1_c04590 0.75 -0.3
453,347 + PGA1_c04590 0.79 -1.3
453,393 + PGA1_c04590 0.83 -1.5
453,432 + PGA1_c04590 0.87 -0.5
453,432 + PGA1_c04590 0.87 +1.1
453,432 + PGA1_c04590 0.87 -0.4
453,440 - PGA1_c04590 0.88 +1.0
453,440 - PGA1_c04590 0.88 +0.0
453,440 - PGA1_c04590 0.88 -3.7
453,440 - PGA1_c04590 0.88 -0.3
453,440 - PGA1_c04590 0.88 -2.0
453,518 + +1.4
453,518 + +1.2
453,518 + -0.4
453,576 + +0.0
453,585 + -0.2
453,590 + -1.5
453,591 + +1.0
453,625 + PGA1_c04600 0.11 +0.8
453,634 + PGA1_c04600 0.12 +0.7
453,699 - PGA1_c04600 0.22 -2.8
453,699 - PGA1_c04600 0.22 -0.1
453,813 - PGA1_c04600 0.38 +0.4
453,823 + PGA1_c04600 0.40 -0.4
453,828 + PGA1_c04600 0.40 -0.2
453,942 + PGA1_c04600 0.57 -0.6
453,980 + PGA1_c04600 0.62 +1.4
454,081 + PGA1_c04600 0.77 -1.3
454,156 - PGA1_c04600 0.88 -1.4
454,165 + PGA1_c04600 0.89 +1.6
454,170 + PGA1_c04600 0.90 +0.1
454,208 - -0.6
454,208 - +1.6
454,220 + +0.0
454,291 + -2.2
454,358 - -2.5
454,362 + +1.6
454,370 - -2.4
454,371 + -0.1
454,371 + -0.4
454,381 + -0.5
454,381 + +1.6
454,389 - +1.1
454,413 + -0.6
454,421 - -0.5
454,421 - +1.1
454,451 - +0.9
454,451 - -1.4
454,456 - +0.8
454,457 + -0.5
454,463 + +0.2
454,484 - -1.2
454,622 + PGA1_c04610 0.29 -0.9
454,628 + PGA1_c04610 0.30 +0.1
454,630 - PGA1_c04610 0.30 -1.0
454,631 - PGA1_c04610 0.31 +1.0
454,631 - PGA1_c04610 0.31 +0.9
454,631 - PGA1_c04610 0.31 -0.4
454,716 + PGA1_c04610 0.43 -0.7
454,747 + PGA1_c04610 0.47 -0.6
454,752 + PGA1_c04610 0.48 +0.8
454,755 - PGA1_c04610 0.49 -1.3
454,755 - PGA1_c04610 0.49 +0.0
454,765 - PGA1_c04610 0.50 -1.0
454,765 - PGA1_c04610 0.50 -1.2
454,765 - PGA1_c04610 0.50 +0.6
454,770 + PGA1_c04610 0.51 +1.3
454,806 - PGA1_c04610 0.56 -0.3
454,808 + PGA1_c04610 0.56 -0.2
454,808 + PGA1_c04610 0.56 +0.2
454,808 + PGA1_c04610 0.56 -0.4
454,808 + PGA1_c04610 0.56 +0.4
454,816 - PGA1_c04610 0.57 +0.2
454,816 - PGA1_c04610 0.57 -0.1
454,816 - PGA1_c04610 0.57 +0.7
454,816 - PGA1_c04610 0.57 -0.3
454,816 - PGA1_c04610 0.57 -1.0
454,816 - PGA1_c04610 0.57 -0.7
454,857 - PGA1_c04610 0.63 -0.1
454,887 - PGA1_c04610 0.68 +1.2
454,897 - PGA1_c04610 0.69 -1.6
454,897 - PGA1_c04610 0.69 -1.9
454,929 + PGA1_c04610 0.74 -1.1
454,934 + PGA1_c04610 0.75 -0.1
454,942 + PGA1_c04610 0.76 +1.2
454,963 - PGA1_c04610 0.79 +0.4
454,982 - PGA1_c04610 0.82 +0.3
454,988 - PGA1_c04610 0.83 +0.7
455,011 + PGA1_c04610 0.86 +0.2
455,087 + +0.1
455,112 - -1.4
455,135 - -0.4
455,144 - -0.7
455,207 + +0.3
455,215 - +1.0
455,215 - +0.3
455,215 - -0.2

Or see this region's nucleotide sequence