Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00410 and PGA1_65p00420 are separated by 116 nucleotides PGA1_65p00420 and PGA1_65p00430 are separated by 8 nucleotides
PGA1_65p00410: PGA1_65p00410 - putative olysaccharide export protein, at 55,834 to 57,264
_65p00410
PGA1_65p00420: PGA1_65p00420 - putative ABC type transporter, at 57,381 to 58,289
_65p00420
PGA1_65p00430: PGA1_65p00430 - putative glycosyl transferase, at 58,298 to 59,341
_65p00430
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 56.593 kb on + strand, within PGA1_65p00410 at 56.641 kb on - strand, within PGA1_65p00410 at 56.820 kb on + strand, within PGA1_65p00410 at 56.829 kb on - strand, within PGA1_65p00410 at 57.037 kb on - strand, within PGA1_65p00410 at 57.119 kb on + strand, within PGA1_65p00410 at 57.224 kb on - strand at 57.295 kb on + strand at 57.295 kb on + strand at 57.419 kb on - strand at 57.451 kb on + strand at 57.454 kb on - strand at 57.485 kb on - strand, within PGA1_65p00420 at 57.634 kb on - strand, within PGA1_65p00420 at 57.748 kb on - strand, within PGA1_65p00420 at 57.784 kb on - strand, within PGA1_65p00420 at 57.784 kb on - strand, within PGA1_65p00420 at 58.026 kb on + strand, within PGA1_65p00420 at 58.034 kb on - strand, within PGA1_65p00420 at 58.106 kb on + strand, within PGA1_65p00420 at 58.186 kb on - strand, within PGA1_65p00420 at 58.196 kb on - strand, within PGA1_65p00420 at 58.366 kb on + strand at 58.366 kb on + strand at 58.550 kb on + strand, within PGA1_65p00430 at 58.565 kb on - strand, within PGA1_65p00430 at 58.633 kb on + strand at 58.633 kb on + strand, within PGA1_65p00430 at 58.633 kb on + strand, within PGA1_65p00430 at 58.641 kb on - strand, within PGA1_65p00430 at 58.646 kb on - strand, within PGA1_65p00430 at 58.648 kb on - strand, within PGA1_65p00430 at 58.651 kb on + strand, within PGA1_65p00430 at 58.736 kb on + strand, within PGA1_65p00430 at 58.820 kb on - strand, within PGA1_65p00430 at 58.931 kb on + strand, within PGA1_65p00430 at 58.939 kb on - strand, within PGA1_65p00430 at 59.115 kb on + strand, within PGA1_65p00430
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 56,593 + PGA1_65p00410 0.53 +1.4 56,641 - PGA1_65p00410 0.56 -1.0 56,820 + PGA1_65p00410 0.69 -2.4 56,829 - PGA1_65p00410 0.70 -0.4 57,037 - PGA1_65p00410 0.84 -0.6 57,119 + PGA1_65p00410 0.90 +0.9 57,224 - -1.2 57,295 + -1.0 57,295 + -3.1 57,419 - -0.2 57,451 + -1.5 57,454 - -0.1 57,485 - PGA1_65p00420 0.11 -1.6 57,634 - PGA1_65p00420 0.28 -2.1 57,748 - PGA1_65p00420 0.40 -1.8 57,784 - PGA1_65p00420 0.44 +0.4 57,784 - PGA1_65p00420 0.44 -2.6 58,026 + PGA1_65p00420 0.71 -2.8 58,034 - PGA1_65p00420 0.72 +0.4 58,106 + PGA1_65p00420 0.80 -0.4 58,186 - PGA1_65p00420 0.89 -3.2 58,196 - PGA1_65p00420 0.90 -2.7 58,366 + -0.3 58,366 + -2.5 58,550 + PGA1_65p00430 0.24 -0.5 58,565 - PGA1_65p00430 0.26 +1.1 58,633 + -2.1 58,633 + PGA1_65p00430 0.32 -1.1 58,633 + PGA1_65p00430 0.32 -0.8 58,641 - PGA1_65p00430 0.33 +0.1 58,646 - PGA1_65p00430 0.33 +0.9 58,648 - PGA1_65p00430 0.34 +0.1 58,651 + PGA1_65p00430 0.34 +0.7 58,736 + PGA1_65p00430 0.42 +0.1 58,820 - PGA1_65p00430 0.50 -0.7 58,931 + PGA1_65p00430 0.61 -2.2 58,939 - PGA1_65p00430 0.61 -1.0 59,115 + PGA1_65p00430 0.78 -0.0
Or see this region's nucleotide sequence