Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02320 and PGA1_262p02330 are separated by 2 nucleotides PGA1_262p02330 and PGA1_262p02340 overlap by 4 nucleotides PGA1_262p02340 and PGA1_262p02350 are separated by 104 nucleotides
PGA1_262p02320: PGA1_262p02320 - putative acetolactate synthase isozyme 1 large subunit, at 253,789 to 255,444
_262p02320
PGA1_262p02330: PGA1_262p02330 - putative aspartate aminotransferase, at 255,447 to 256,634
_262p02330
PGA1_262p02340: PGA1_262p02340 - putative transcriptional regulator, TetR family, at 256,631 to 257,278
_262p02340
PGA1_262p02350: PGA1_262p02350 - histidine transport ATP-binding protein HisP, at 257,383 to 258,228
_262p02350
Position (kb) 255
256
257 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 254.590 kb on - strand, within PGA1_262p02320 at 254.592 kb on + strand, within PGA1_262p02320 at 254.655 kb on - strand, within PGA1_262p02320 at 254.765 kb on - strand, within PGA1_262p02320 at 254.770 kb on - strand, within PGA1_262p02320 at 254.847 kb on + strand, within PGA1_262p02320 at 254.855 kb on + strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.948 kb on + strand, within PGA1_262p02320 at 254.956 kb on - strand, within PGA1_262p02320 at 254.994 kb on + strand, within PGA1_262p02320 at 255.013 kb on - strand, within PGA1_262p02320 at 255.142 kb on - strand, within PGA1_262p02320 at 255.198 kb on + strand, within PGA1_262p02320 at 255.201 kb on - strand, within PGA1_262p02320 at 255.228 kb on - strand, within PGA1_262p02320 at 255.246 kb on + strand, within PGA1_262p02320 at 255.254 kb on - strand, within PGA1_262p02320 at 255.463 kb on + strand at 255.598 kb on - strand, within PGA1_262p02330 at 255.674 kb on + strand, within PGA1_262p02330 at 255.674 kb on + strand, within PGA1_262p02330 at 255.705 kb on - strand, within PGA1_262p02330 at 255.794 kb on + strand, within PGA1_262p02330 at 255.873 kb on - strand, within PGA1_262p02330 at 255.895 kb on + strand, within PGA1_262p02330 at 255.962 kb on - strand, within PGA1_262p02330 at 256.032 kb on + strand, within PGA1_262p02330 at 256.094 kb on - strand, within PGA1_262p02330 at 256.100 kb on + strand, within PGA1_262p02330 at 256.225 kb on + strand, within PGA1_262p02330 at 256.432 kb on - strand, within PGA1_262p02330 at 256.490 kb on + strand, within PGA1_262p02330 at 256.509 kb on + strand, within PGA1_262p02330 at 256.575 kb on - strand at 256.585 kb on - strand at 256.609 kb on + strand at 256.644 kb on + strand at 256.652 kb on - strand at 256.666 kb on - strand at 257.175 kb on - strand, within PGA1_262p02340 at 257.287 kb on + strand at 257.295 kb on - strand at 257.300 kb on + strand at 257.445 kb on - strand at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.570 kb on - strand, within PGA1_262p02350 at 257.619 kb on - strand, within PGA1_262p02350
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 254,590 - PGA1_262p02320 0.48 -0.4 254,592 + PGA1_262p02320 0.48 -0.2 254,655 - PGA1_262p02320 0.52 +1.0 254,765 - PGA1_262p02320 0.59 -1.6 254,770 - PGA1_262p02320 0.59 -0.2 254,847 + PGA1_262p02320 0.64 +1.0 254,855 + PGA1_262p02320 0.64 +1.1 254,863 - PGA1_262p02320 0.65 +0.2 254,863 - PGA1_262p02320 0.65 -1.3 254,863 - PGA1_262p02320 0.65 -1.8 254,863 - PGA1_262p02320 0.65 +1.4 254,863 - PGA1_262p02320 0.65 -0.4 254,948 + PGA1_262p02320 0.70 +1.8 254,956 - PGA1_262p02320 0.70 +0.0 254,994 + PGA1_262p02320 0.73 -0.6 255,013 - PGA1_262p02320 0.74 -1.1 255,142 - PGA1_262p02320 0.82 +0.8 255,198 + PGA1_262p02320 0.85 +0.0 255,201 - PGA1_262p02320 0.85 -2.7 255,228 - PGA1_262p02320 0.87 -0.3 255,246 + PGA1_262p02320 0.88 -0.0 255,254 - PGA1_262p02320 0.88 +1.0 255,463 + -1.5 255,598 - PGA1_262p02330 0.13 -0.6 255,674 + PGA1_262p02330 0.19 -0.0 255,674 + PGA1_262p02330 0.19 -2.2 255,705 - PGA1_262p02330 0.22 +0.4 255,794 + PGA1_262p02330 0.29 -3.0 255,873 - PGA1_262p02330 0.36 +1.4 255,895 + PGA1_262p02330 0.38 +0.1 255,962 - PGA1_262p02330 0.43 -0.8 256,032 + PGA1_262p02330 0.49 -1.2 256,094 - PGA1_262p02330 0.54 +0.9 256,100 + PGA1_262p02330 0.55 +0.4 256,225 + PGA1_262p02330 0.65 -1.2 256,432 - PGA1_262p02330 0.83 -1.4 256,490 + PGA1_262p02330 0.88 -0.2 256,509 + PGA1_262p02330 0.89 -0.0 256,575 - +0.5 256,585 - +1.7 256,609 + -0.6 256,644 + +0.3 256,652 - -0.1 256,666 - +0.6 257,175 - PGA1_262p02340 0.84 +1.2 257,287 + -0.8 257,295 - +0.3 257,300 + +0.9 257,445 - -1.0 257,532 + PGA1_262p02350 0.18 +0.7 257,532 + PGA1_262p02350 0.18 +0.2 257,532 + PGA1_262p02350 0.18 -1.6 257,540 + PGA1_262p02350 0.19 -1.4 257,540 + PGA1_262p02350 0.19 -1.1 257,570 - PGA1_262p02350 0.22 +0.7 257,619 - PGA1_262p02350 0.28 -0.1
Or see this region's nucleotide sequence