Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01020

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01000 and PGA1_262p01010 overlap by 4 nucleotidesPGA1_262p01010 and PGA1_262p01020 are separated by 5 nucleotidesPGA1_262p01020 and PGA1_262p01030 overlap by 4 nucleotides PGA1_262p01000: PGA1_262p01000 - dipeptide transport ATP-binding protein DppF, at 109,633 to 110,667 _262p01000 PGA1_262p01010: PGA1_262p01010 - dipeptide transport ATP-binding protein DppD, at 110,664 to 111,656 _262p01010 PGA1_262p01020: PGA1_262p01020 - dipeptide transport system permease protein DppC, at 111,662 to 112,609 _262p01020 PGA1_262p01030: PGA1_262p01030 - dipeptide transport system permease protein DppB, at 112,606 to 113,586 _262p01030 Position (kb) 111 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 110.730 kb on - strandat 110.900 kb on + strand, within PGA1_262p01010at 110.908 kb on + strand, within PGA1_262p01010at 110.908 kb on + strand, within PGA1_262p01010at 110.916 kb on - strand, within PGA1_262p01010at 110.961 kb on - strand, within PGA1_262p01010at 111.017 kb on + strand, within PGA1_262p01010at 111.017 kb on + strand, within PGA1_262p01010at 111.032 kb on + strand, within PGA1_262p01010at 111.101 kb on + strand, within PGA1_262p01010at 111.195 kb on - strand, within PGA1_262p01010at 111.230 kb on - strand, within PGA1_262p01010at 111.237 kb on + strand, within PGA1_262p01010at 111.552 kb on + strand, within PGA1_262p01010at 111.659 kb on + strandat 111.892 kb on + strand, within PGA1_262p01020at 111.900 kb on - strand, within PGA1_262p01020at 111.900 kb on - strand, within PGA1_262p01020at 111.900 kb on - strand, within PGA1_262p01020at 111.903 kb on - strand, within PGA1_262p01020at 111.972 kb on - strand, within PGA1_262p01020at 111.972 kb on - strand, within PGA1_262p01020at 111.972 kb on - strand, within PGA1_262p01020at 112.018 kb on + strand, within PGA1_262p01020at 112.018 kb on + strand, within PGA1_262p01020at 112.018 kb on + strand, within PGA1_262p01020at 112.026 kb on - strand, within PGA1_262p01020at 112.115 kb on + strand, within PGA1_262p01020at 112.127 kb on - strand, within PGA1_262p01020at 112.213 kb on + strand, within PGA1_262p01020at 112.311 kb on + strand, within PGA1_262p01020at 112.355 kb on + strand, within PGA1_262p01020at 112.399 kb on + strand, within PGA1_262p01020at 112.439 kb on - strand, within PGA1_262p01020at 112.506 kb on - strand, within PGA1_262p01020at 112.521 kb on + strandat 112.688 kb on - strandat 112.728 kb on - strand, within PGA1_262p01030at 112.802 kb on + strand, within PGA1_262p01030at 112.802 kb on + strand, within PGA1_262p01030at 113.099 kb on - strand, within PGA1_262p01030at 113.297 kb on - strand, within PGA1_262p01030at 113.511 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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110,730 - +1.6
110,900 + PGA1_262p01010 0.24 +0.7
110,908 + PGA1_262p01010 0.25 -0.3
110,908 + PGA1_262p01010 0.25 -0.1
110,916 - PGA1_262p01010 0.25 -0.3
110,961 - PGA1_262p01010 0.30 +1.4
111,017 + PGA1_262p01010 0.36 -0.0
111,017 + PGA1_262p01010 0.36 -1.0
111,032 + PGA1_262p01010 0.37 -0.6
111,101 + PGA1_262p01010 0.44 -0.5
111,195 - PGA1_262p01010 0.53 +0.0
111,230 - PGA1_262p01010 0.57 -0.1
111,237 + PGA1_262p01010 0.58 -1.0
111,552 + PGA1_262p01010 0.89 -0.7
111,659 + -0.4
111,892 + PGA1_262p01020 0.24 -1.1
111,900 - PGA1_262p01020 0.25 +1.2
111,900 - PGA1_262p01020 0.25 +0.3
111,900 - PGA1_262p01020 0.25 +3.4
111,903 - PGA1_262p01020 0.25 +1.1
111,972 - PGA1_262p01020 0.33 +2.0
111,972 - PGA1_262p01020 0.33 -1.8
111,972 - PGA1_262p01020 0.33 -1.3
112,018 + PGA1_262p01020 0.38 +0.8
112,018 + PGA1_262p01020 0.38 +2.7
112,018 + PGA1_262p01020 0.38 -0.2
112,026 - PGA1_262p01020 0.38 +1.5
112,115 + PGA1_262p01020 0.48 -0.6
112,127 - PGA1_262p01020 0.49 +0.6
112,213 + PGA1_262p01020 0.58 +0.7
112,311 + PGA1_262p01020 0.68 -0.8
112,355 + PGA1_262p01020 0.73 -0.0
112,399 + PGA1_262p01020 0.78 -0.7
112,439 - PGA1_262p01020 0.82 -0.4
112,506 - PGA1_262p01020 0.89 +1.4
112,521 + -0.0
112,688 - -1.0
112,728 - PGA1_262p01030 0.12 +1.6
112,802 + PGA1_262p01030 0.20 -0.6
112,802 + PGA1_262p01030 0.20 +0.5
113,099 - PGA1_262p01030 0.50 -2.9
113,297 - PGA1_262p01030 0.70 +0.1
113,511 - +0.1

Or see this region's nucleotide sequence