Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00690 and PGA1_262p00700 are separated by 1 nucleotides PGA1_262p00700 and PGA1_262p00710 overlap by 4 nucleotides PGA1_262p00710 and PGA1_262p00720 overlap by 4 nucleotides
PGA1_262p00690: PGA1_262p00690 - stressosome protein rsbRA-like protein, at 79,498 to 80,373
_262p00690
PGA1_262p00700: PGA1_262p00700 - stressosome protein rsbS-like protein, at 80,375 to 80,737
_262p00700
PGA1_262p00710: PGA1_262p00710 - serine/threonine-protein kinase RsbT-like protein, at 80,734 to 81,141
_262p00710
PGA1_262p00720: PGA1_262p00720 - serine/threonine-protein kinase RsbT-like protein, at 81,138 to 82,151
_262p00720
Position (kb) 80
81 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.451 kb on - strand at 79.493 kb on - strand at 79.514 kb on + strand at 79.514 kb on + strand at 79.539 kb on + strand at 79.602 kb on - strand, within PGA1_262p00690 at 79.636 kb on - strand, within PGA1_262p00690 at 79.638 kb on + strand, within PGA1_262p00690 at 79.638 kb on + strand, within PGA1_262p00690 at 79.641 kb on - strand, within PGA1_262p00690 at 79.646 kb on - strand, within PGA1_262p00690 at 79.688 kb on - strand, within PGA1_262p00690 at 79.705 kb on - strand, within PGA1_262p00690 at 79.751 kb on + strand, within PGA1_262p00690 at 79.775 kb on + strand, within PGA1_262p00690 at 79.775 kb on + strand, within PGA1_262p00690 at 79.783 kb on - strand, within PGA1_262p00690 at 79.822 kb on + strand, within PGA1_262p00690 at 80.023 kb on + strand, within PGA1_262p00690 at 80.116 kb on - strand, within PGA1_262p00690 at 80.239 kb on - strand, within PGA1_262p00690 at 80.334 kb on - strand at 80.350 kb on - strand at 80.600 kb on + strand, within PGA1_262p00700 at 80.600 kb on + strand, within PGA1_262p00700 at 80.674 kb on + strand, within PGA1_262p00700 at 80.957 kb on + strand, within PGA1_262p00710 at 80.959 kb on + strand, within PGA1_262p00710 at 81.138 kb on - strand at 81.155 kb on - strand at 81.238 kb on - strand at 81.376 kb on + strand, within PGA1_262p00720 at 81.437 kb on + strand, within PGA1_262p00720 at 81.497 kb on + strand, within PGA1_262p00720 at 81.586 kb on - strand, within PGA1_262p00720 at 81.639 kb on + strand, within PGA1_262p00720 at 81.657 kb on - strand, within PGA1_262p00720 at 81.732 kb on - strand, within PGA1_262p00720
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 79,451 - +2.0 79,493 - +1.0 79,514 + +0.1 79,514 + +1.0 79,539 + -0.4 79,602 - PGA1_262p00690 0.12 +1.6 79,636 - PGA1_262p00690 0.16 -0.1 79,638 + PGA1_262p00690 0.16 +1.1 79,638 + PGA1_262p00690 0.16 -0.1 79,641 - PGA1_262p00690 0.16 +0.1 79,646 - PGA1_262p00690 0.17 +0.4 79,688 - PGA1_262p00690 0.22 -1.3 79,705 - PGA1_262p00690 0.24 +0.9 79,751 + PGA1_262p00690 0.29 +1.7 79,775 + PGA1_262p00690 0.32 -0.0 79,775 + PGA1_262p00690 0.32 -0.9 79,783 - PGA1_262p00690 0.33 +2.2 79,822 + PGA1_262p00690 0.37 -1.5 80,023 + PGA1_262p00690 0.60 -1.2 80,116 - PGA1_262p00690 0.71 +0.0 80,239 - PGA1_262p00690 0.85 -2.0 80,334 - +0.8 80,350 - +0.3 80,600 + PGA1_262p00700 0.62 -0.6 80,600 + PGA1_262p00700 0.62 -0.7 80,674 + PGA1_262p00700 0.82 -1.4 80,957 + PGA1_262p00710 0.55 +0.5 80,959 + PGA1_262p00710 0.55 -2.5 81,138 - +1.2 81,155 - -1.1 81,238 - +0.2 81,376 + PGA1_262p00720 0.23 +0.2 81,437 + PGA1_262p00720 0.29 -0.0 81,497 + PGA1_262p00720 0.35 -2.2 81,586 - PGA1_262p00720 0.44 -0.5 81,639 + PGA1_262p00720 0.49 -1.8 81,657 - PGA1_262p00720 0.51 +0.4 81,732 - PGA1_262p00720 0.59 -1.7
Or see this region's nucleotide sequence