Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00450 and PGA1_262p00460 are separated by 122 nucleotides PGA1_262p00460 and PGA1_262p00470 are separated by 0 nucleotides PGA1_262p00470 and PGA1_262p00480 overlap by 17 nucleotides PGA1_262p00480 and PGA1_262p00490 are separated by 38 nucleotides
PGA1_262p00450: PGA1_262p00450 - glucose transporter, ATPase component <small>(from data)</small>, at 54,269 to 55,051
_262p00450
PGA1_262p00460: PGA1_262p00460 - transcriptional regulator, MerR family, at 55,174 to 55,602
_262p00460
PGA1_262p00470: PGA1_262p00470 - Plasmid stabilization system protein, at 55,603 to 55,971
_262p00470
PGA1_262p00480: PGA1_262p00480 - putative addiction module antidote protein, CC2985 family, at 55,955 to 56,230
_262p00480
PGA1_262p00490: PGA1_262p00490 - hypothetical protein, at 56,269 to 56,991
_262p00490
Position (kb) 55
56 Strain fitness (log2 ratio) -1
0
1 at 54.816 kb on + strand, within PGA1_262p00450 at 54.970 kb on + strand, within PGA1_262p00450 at 55.208 kb on + strand at 55.208 kb on + strand at 55.232 kb on + strand, within PGA1_262p00460 at 55.232 kb on + strand, within PGA1_262p00460 at 55.232 kb on + strand, within PGA1_262p00460 at 55.240 kb on - strand, within PGA1_262p00460 at 55.263 kb on + strand, within PGA1_262p00460 at 55.303 kb on + strand, within PGA1_262p00460 at 55.308 kb on + strand, within PGA1_262p00460 at 55.475 kb on - strand, within PGA1_262p00460 at 55.482 kb on - strand, within PGA1_262p00460 at 55.657 kb on - strand, within PGA1_262p00470 at 55.699 kb on + strand, within PGA1_262p00470 at 55.709 kb on + strand, within PGA1_262p00470 at 55.802 kb on - strand, within PGA1_262p00470 at 55.851 kb on - strand, within PGA1_262p00470 at 56.321 kb on - strand at 56.321 kb on - strand at 56.662 kb on + strand, within PGA1_262p00490 at 56.760 kb on + strand, within PGA1_262p00490 at 56.863 kb on + strand, within PGA1_262p00490 at 56.884 kb on + strand, within PGA1_262p00490 at 56.955 kb on + strand at 56.961 kb on + strand at 56.961 kb on + strand at 56.963 kb on - strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.969 kb on - strand at 56.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 54,816 + PGA1_262p00450 0.70 +0.9 54,970 + PGA1_262p00450 0.90 -1.6 55,208 + -0.5 55,208 + +0.4 55,232 + PGA1_262p00460 0.14 +1.0 55,232 + PGA1_262p00460 0.14 -0.9 55,232 + PGA1_262p00460 0.14 +0.3 55,240 - PGA1_262p00460 0.15 +0.1 55,263 + PGA1_262p00460 0.21 +0.7 55,303 + PGA1_262p00460 0.30 +0.2 55,308 + PGA1_262p00460 0.31 -0.1 55,475 - PGA1_262p00460 0.70 -1.4 55,482 - PGA1_262p00460 0.72 +0.3 55,657 - PGA1_262p00470 0.15 +0.2 55,699 + PGA1_262p00470 0.26 +1.6 55,709 + PGA1_262p00470 0.29 +0.8 55,802 - PGA1_262p00470 0.54 +1.4 55,851 - PGA1_262p00470 0.67 +0.4 56,321 - +0.2 56,321 - +0.8 56,662 + PGA1_262p00490 0.54 +0.1 56,760 + PGA1_262p00490 0.68 -1.6 56,863 + PGA1_262p00490 0.82 +0.2 56,884 + PGA1_262p00490 0.85 -0.9 56,955 + -0.8 56,961 + -1.5 56,961 + +0.4 56,963 - +0.1 56,966 + +0.1 56,966 + +0.8 56,966 + -0.3 56,966 + +0.3 56,969 - -0.0 56,969 - -1.1
Or see this region's nucleotide sequence