Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00280 and PGA1_262p00290 are separated by 200 nucleotides PGA1_262p00290 and PGA1_262p00300 are separated by 148 nucleotides PGA1_262p00300 and PGA1_262p00310 are separated by 67 nucleotides
PGA1_262p00280: PGA1_262p00280 - putative proline racemase, at 31,428 to 32,453
_262p00280
PGA1_262p00290: PGA1_262p00290 - putative transcriptional regulator, at 32,654 to 33,265
_262p00290
PGA1_262p00300: PGA1_262p00300 - ABC transporter, extracellular solute-binding protein, at 33,414 to 35,000
_262p00300
PGA1_262p00310: PGA1_262p00310 - glutathione transport system permease protein GsiC, at 35,068 to 36,009
_262p00310
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -2
-1
0
1 at 32.460 kb on + strand at 32.613 kb on - strand at 32.623 kb on - strand at 32.623 kb on - strand at 32.623 kb on - strand at 32.667 kb on - strand at 32.712 kb on + strand at 32.712 kb on + strand at 32.720 kb on + strand, within PGA1_262p00290 at 32.720 kb on - strand, within PGA1_262p00290 at 32.720 kb on - strand, within PGA1_262p00290 at 32.780 kb on + strand, within PGA1_262p00290 at 33.016 kb on + strand, within PGA1_262p00290 at 33.016 kb on + strand, within PGA1_262p00290 at 33.016 kb on + strand, within PGA1_262p00290 at 33.016 kb on + strand, within PGA1_262p00290 at 33.049 kb on - strand, within PGA1_262p00290 at 33.122 kb on - strand, within PGA1_262p00290 at 33.151 kb on + strand, within PGA1_262p00290 at 33.159 kb on - strand, within PGA1_262p00290 at 33.159 kb on - strand, within PGA1_262p00290 at 33.172 kb on - strand, within PGA1_262p00290 at 33.174 kb on + strand, within PGA1_262p00290 at 33.174 kb on + strand, within PGA1_262p00290 at 33.237 kb on - strand at 33.259 kb on + strand at 33.278 kb on + strand at 33.286 kb on - strand at 33.305 kb on + strand at 33.399 kb on + strand at 33.456 kb on + strand at 33.464 kb on - strand at 33.464 kb on - strand at 33.490 kb on - strand at 33.646 kb on + strand, within PGA1_262p00300 at 33.955 kb on - strand, within PGA1_262p00300 at 34.198 kb on - strand, within PGA1_262p00300 at 34.258 kb on - strand, within PGA1_262p00300 at 34.383 kb on - strand, within PGA1_262p00300 at 34.457 kb on + strand, within PGA1_262p00300 at 34.488 kb on - strand, within PGA1_262p00300 at 34.504 kb on - strand, within PGA1_262p00300 at 34.923 kb on - strand at 34.955 kb on - strand at 35.105 kb on - strand at 35.288 kb on - strand, within PGA1_262p00310 at 35.290 kb on + strand, within PGA1_262p00310 at 35.296 kb on - strand, within PGA1_262p00310 at 35.298 kb on - strand, within PGA1_262p00310 at 35.298 kb on - strand, within PGA1_262p00310 at 35.307 kb on - strand, within PGA1_262p00310 at 35.453 kb on + strand, within PGA1_262p00310 at 35.474 kb on - strand, within PGA1_262p00310 at 35.624 kb on + strand, within PGA1_262p00310 at 35.920 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 32,460 + -1.4 32,613 - -2.4 32,623 - +0.1 32,623 - +0.6 32,623 - +0.5 32,667 - -0.0 32,712 + +1.2 32,712 + -0.2 32,720 + PGA1_262p00290 0.11 +0.4 32,720 - PGA1_262p00290 0.11 -1.2 32,720 - PGA1_262p00290 0.11 +0.1 32,780 + PGA1_262p00290 0.21 -0.2 33,016 + PGA1_262p00290 0.59 -0.2 33,016 + PGA1_262p00290 0.59 +0.8 33,016 + PGA1_262p00290 0.59 +1.0 33,016 + PGA1_262p00290 0.59 +1.0 33,049 - PGA1_262p00290 0.65 +0.4 33,122 - PGA1_262p00290 0.76 -0.7 33,151 + PGA1_262p00290 0.81 +0.9 33,159 - PGA1_262p00290 0.83 +1.2 33,159 - PGA1_262p00290 0.83 +0.6 33,172 - PGA1_262p00290 0.85 +1.5 33,174 + PGA1_262p00290 0.85 -0.6 33,174 + PGA1_262p00290 0.85 +0.2 33,237 - -0.8 33,259 + +0.4 33,278 + -0.1 33,286 - +0.8 33,305 + -0.1 33,399 + -0.2 33,456 + -0.9 33,464 - +1.2 33,464 - -0.0 33,490 - -0.2 33,646 + PGA1_262p00300 0.15 -0.6 33,955 - PGA1_262p00300 0.34 -0.3 34,198 - PGA1_262p00300 0.49 -0.1 34,258 - PGA1_262p00300 0.53 -0.6 34,383 - PGA1_262p00300 0.61 -0.6 34,457 + PGA1_262p00300 0.66 -0.1 34,488 - PGA1_262p00300 0.68 -2.0 34,504 - PGA1_262p00300 0.69 -1.4 34,923 - +0.3 34,955 - -0.8 35,105 - -0.7 35,288 - PGA1_262p00310 0.23 +0.2 35,290 + PGA1_262p00310 0.24 +0.1 35,296 - PGA1_262p00310 0.24 -0.1 35,298 - PGA1_262p00310 0.24 -0.1 35,298 - PGA1_262p00310 0.24 -0.5 35,307 - PGA1_262p00310 0.25 +0.8 35,453 + PGA1_262p00310 0.41 -0.9 35,474 - PGA1_262p00310 0.43 +0.1 35,624 + PGA1_262p00310 0.59 +0.9 35,920 + +0.2
Or see this region's nucleotide sequence