Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22290 and ABZR87_RS22295 are separated by 428 nucleotides ABZR87_RS22295 and ABZR87_RS22300 are separated by 122 nucleotides ABZR87_RS22300 and ABZR87_RS22305 are separated by 127 nucleotides
ABZR87_RS22290: ABZR87_RS22290 - flagellar basal body rod protein FlgB, at 1,360,671 to 1,361,126
_RS22290
ABZR87_RS22295: ABZR87_RS22295 - flagellar basal body P-ring formation chaperone FlgA, at 1,361,555 to 1,362,433
_RS22295
ABZR87_RS22300: ABZR87_RS22300 - flagellar biosynthesis anti-sigma factor FlgM, at 1,362,556 to 1,362,876
_RS22300
ABZR87_RS22305: ABZR87_RS22305 - flagella synthesis protein FlgN, at 1,363,004 to 1,363,465
_RS22305
Position (kb) 1361
1362
1363 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1360.616 kb on + strand at 1360.616 kb on + strand at 1360.617 kb on - strand at 1360.617 kb on - strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.672 kb on + strand at 1360.673 kb on - strand at 1360.673 kb on - strand at 1360.673 kb on - strand at 1360.738 kb on + strand, within ABZR87_RS22290 at 1360.738 kb on + strand, within ABZR87_RS22290 at 1360.826 kb on - strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.157 kb on + strand at 1361.158 kb on - strand at 1361.158 kb on - strand at 1361.208 kb on + strand at 1361.208 kb on + strand at 1361.351 kb on + strand at 1361.351 kb on + strand at 1361.352 kb on - strand at 1361.372 kb on + strand at 1361.373 kb on - strand at 1361.436 kb on + strand at 1361.436 kb on + strand at 1361.468 kb on + strand at 1361.468 kb on + strand at 1361.468 kb on + strand at 1361.469 kb on - strand at 1361.520 kb on + strand at 1361.520 kb on + strand at 1361.521 kb on - strand at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.107 kb on - strand, within ABZR87_RS22295 at 1362.192 kb on + strand, within ABZR87_RS22295 at 1362.192 kb on + strand, within ABZR87_RS22295 at 1362.192 kb on + strand, within ABZR87_RS22295 at 1362.193 kb on - strand, within ABZR87_RS22295 at 1362.193 kb on - strand, within ABZR87_RS22295 at 1362.193 kb on - strand, within ABZR87_RS22295 at 1362.193 kb on - strand, within ABZR87_RS22295 at 1362.193 kb on - strand, within ABZR87_RS22295 at 1362.432 kb on - strand at 1362.432 kb on - strand at 1362.432 kb on - strand at 1362.464 kb on + strand at 1362.464 kb on + strand at 1362.483 kb on + strand at 1362.484 kb on - strand at 1362.484 kb on - strand at 1362.484 kb on - strand at 1362.493 kb on + strand at 1362.527 kb on + strand at 1362.527 kb on + strand at 1362.527 kb on + strand at 1362.527 kb on + strand at 1362.527 kb on + strand at 1362.527 kb on + strand at 1362.528 kb on - strand at 1362.528 kb on - strand at 1362.528 kb on - strand at 1362.528 kb on - strand at 1362.570 kb on + strand at 1362.570 kb on + strand at 1362.570 kb on + strand at 1362.570 kb on + strand at 1362.571 kb on - strand at 1362.571 kb on - strand at 1362.571 kb on - strand at 1362.571 kb on - strand at 1362.571 kb on - strand at 1362.582 kb on + strand at 1362.582 kb on + strand at 1362.583 kb on - strand at 1362.583 kb on - strand at 1362.583 kb on - strand at 1362.583 kb on - strand at 1362.583 kb on - strand at 1362.654 kb on + strand, within ABZR87_RS22300 at 1362.905 kb on - strand at 1362.905 kb on - strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.997 kb on - strand at 1362.997 kb on - strand at 1362.997 kb on - strand at 1363.235 kb on + strand, within ABZR87_RS22305 at 1363.235 kb on + strand, within ABZR87_RS22305 at 1363.235 kb on + strand, within ABZR87_RS22305 at 1363.235 kb on + strand, within ABZR87_RS22305 at 1363.235 kb on + strand, within ABZR87_RS22305 at 1363.236 kb on - strand, within ABZR87_RS22305 at 1363.236 kb on - strand, within ABZR87_RS22305 at 1363.236 kb on - strand, within ABZR87_RS22305 at 1363.236 kb on - strand, within ABZR87_RS22305 at 1363.236 kb on - strand, within ABZR87_RS22305 at 1363.407 kb on - strand, within ABZR87_RS22305 at 1363.407 kb on - strand, within ABZR87_RS22305
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 1,360,616 + +1.6 1,360,616 + -2.4 1,360,617 - -0.1 1,360,617 - +0.5 1,360,660 + -1.9 1,360,660 + -1.1 1,360,660 + -1.6 1,360,660 + -2.2 1,360,660 + -0.7 1,360,661 - +0.2 1,360,661 - +0.1 1,360,661 - +0.5 1,360,661 - -1.2 1,360,661 - -1.1 1,360,672 + -1.1 1,360,673 - +0.2 1,360,673 - -0.9 1,360,673 - -0.6 1,360,738 + ABZR87_RS22290 0.15 -0.8 1,360,738 + ABZR87_RS22290 0.15 +0.6 1,360,826 - ABZR87_RS22290 0.34 -2.1 1,361,014 + ABZR87_RS22290 0.75 -1.3 1,361,014 + ABZR87_RS22290 0.75 -1.7 1,361,014 + ABZR87_RS22290 0.75 -1.9 1,361,014 + ABZR87_RS22290 0.75 -1.0 1,361,015 - ABZR87_RS22290 0.75 -0.9 1,361,015 - ABZR87_RS22290 0.75 -1.3 1,361,015 - ABZR87_RS22290 0.75 -2.1 1,361,015 - ABZR87_RS22290 0.75 -1.9 1,361,157 + -1.8 1,361,158 - -0.2 1,361,158 - -1.0 1,361,208 + -2.2 1,361,208 + -2.1 1,361,351 + -2.0 1,361,351 + -2.2 1,361,352 - +0.1 1,361,372 + -2.4 1,361,373 - +1.5 1,361,436 + -2.7 1,361,436 + -0.5 1,361,468 + -0.8 1,361,468 + -0.8 1,361,468 + -2.3 1,361,469 - -1.7 1,361,520 + -0.5 1,361,520 + -0.4 1,361,521 - +0.6 1,361,985 + ABZR87_RS22295 0.49 -1.1 1,361,985 + ABZR87_RS22295 0.49 -1.6 1,361,985 + ABZR87_RS22295 0.49 -2.0 1,361,985 + ABZR87_RS22295 0.49 -1.5 1,361,985 + ABZR87_RS22295 0.49 -0.4 1,361,985 + ABZR87_RS22295 0.49 -3.2 1,361,985 + ABZR87_RS22295 0.49 -1.3 1,361,985 + ABZR87_RS22295 0.49 -1.5 1,361,985 + ABZR87_RS22295 0.49 -2.1 1,361,985 + ABZR87_RS22295 0.49 -1.0 1,361,985 + ABZR87_RS22295 0.49 -1.8 1,361,985 + ABZR87_RS22295 0.49 -1.6 1,361,985 + ABZR87_RS22295 0.49 -1.2 1,361,986 - ABZR87_RS22295 0.49 +0.4 1,361,986 - ABZR87_RS22295 0.49 -3.5 1,361,986 - ABZR87_RS22295 0.49 -1.8 1,361,986 - ABZR87_RS22295 0.49 -0.9 1,361,986 - ABZR87_RS22295 0.49 -3.8 1,361,986 - ABZR87_RS22295 0.49 +0.6 1,361,986 - ABZR87_RS22295 0.49 -1.3 1,361,986 - ABZR87_RS22295 0.49 -3.1 1,361,986 - ABZR87_RS22295 0.49 -2.4 1,361,986 - ABZR87_RS22295 0.49 -1.0 1,361,986 - ABZR87_RS22295 0.49 -0.7 1,361,986 - ABZR87_RS22295 0.49 -1.0 1,361,986 - ABZR87_RS22295 0.49 -1.1 1,361,986 - ABZR87_RS22295 0.49 -1.5 1,361,986 - ABZR87_RS22295 0.49 -2.8 1,361,986 - ABZR87_RS22295 0.49 -2.7 1,361,986 - ABZR87_RS22295 0.49 -0.6 1,362,062 + ABZR87_RS22295 0.58 -2.6 1,362,062 + ABZR87_RS22295 0.58 +0.0 1,362,062 + ABZR87_RS22295 0.58 -3.5 1,362,062 + ABZR87_RS22295 0.58 -0.4 1,362,062 + ABZR87_RS22295 0.58 +0.2 1,362,062 + ABZR87_RS22295 0.58 -2.1 1,362,062 + ABZR87_RS22295 0.58 -0.7 1,362,062 + ABZR87_RS22295 0.58 -0.7 1,362,062 + ABZR87_RS22295 0.58 -1.8 1,362,062 + ABZR87_RS22295 0.58 -1.0 1,362,062 + ABZR87_RS22295 0.58 -3.7 1,362,063 - ABZR87_RS22295 0.58 -0.5 1,362,063 - ABZR87_RS22295 0.58 +0.0 1,362,063 - ABZR87_RS22295 0.58 -1.4 1,362,063 - ABZR87_RS22295 0.58 -1.4 1,362,063 - ABZR87_RS22295 0.58 -2.7 1,362,063 - ABZR87_RS22295 0.58 -0.2 1,362,063 - ABZR87_RS22295 0.58 -1.5 1,362,063 - ABZR87_RS22295 0.58 +0.1 1,362,063 - ABZR87_RS22295 0.58 -1.4 1,362,063 - ABZR87_RS22295 0.58 -1.0 1,362,065 + ABZR87_RS22295 0.58 -2.3 1,362,065 + ABZR87_RS22295 0.58 -1.9 1,362,065 + ABZR87_RS22295 0.58 -1.3 1,362,065 + ABZR87_RS22295 0.58 -0.8 1,362,065 + ABZR87_RS22295 0.58 +0.0 1,362,065 + ABZR87_RS22295 0.58 -1.2 1,362,065 + ABZR87_RS22295 0.58 +0.6 1,362,065 + ABZR87_RS22295 0.58 -0.1 1,362,065 + ABZR87_RS22295 0.58 +0.3 1,362,066 - ABZR87_RS22295 0.58 -1.8 1,362,066 - ABZR87_RS22295 0.58 -1.6 1,362,066 - ABZR87_RS22295 0.58 -0.7 1,362,066 - ABZR87_RS22295 0.58 -1.6 1,362,066 - ABZR87_RS22295 0.58 -2.1 1,362,066 - ABZR87_RS22295 0.58 -2.1 1,362,066 - ABZR87_RS22295 0.58 -2.8 1,362,066 - ABZR87_RS22295 0.58 -0.7 1,362,066 - ABZR87_RS22295 0.58 -1.5 1,362,066 - ABZR87_RS22295 0.58 -0.9 1,362,066 - ABZR87_RS22295 0.58 -0.6 1,362,066 - ABZR87_RS22295 0.58 -1.5 1,362,066 - ABZR87_RS22295 0.58 -1.4 1,362,107 - ABZR87_RS22295 0.63 -0.4 1,362,192 + ABZR87_RS22295 0.72 -1.6 1,362,192 + ABZR87_RS22295 0.72 -0.6 1,362,192 + ABZR87_RS22295 0.72 -2.6 1,362,193 - ABZR87_RS22295 0.73 -1.6 1,362,193 - ABZR87_RS22295 0.73 -0.4 1,362,193 - ABZR87_RS22295 0.73 -2.2 1,362,193 - ABZR87_RS22295 0.73 -1.0 1,362,193 - ABZR87_RS22295 0.73 -1.1 1,362,432 - -0.5 1,362,432 - +1.0 1,362,432 - +0.4 1,362,464 + +0.4 1,362,464 + -0.1 1,362,483 + +0.1 1,362,484 - -0.5 1,362,484 - +0.4 1,362,484 - +0.1 1,362,493 + -1.0 1,362,527 + -0.3 1,362,527 + -0.3 1,362,527 + +0.7 1,362,527 + +0.6 1,362,527 + -1.7 1,362,527 + -1.7 1,362,528 - -1.6 1,362,528 - -1.9 1,362,528 - +0.4 1,362,528 - -0.9 1,362,570 + -2.1 1,362,570 + -1.1 1,362,570 + -0.7 1,362,570 + -0.9 1,362,571 - -0.7 1,362,571 - -0.7 1,362,571 - -2.9 1,362,571 - +0.0 1,362,571 - -0.3 1,362,582 + -2.6 1,362,582 + -0.7 1,362,583 - -0.7 1,362,583 - -2.1 1,362,583 - -4.0 1,362,583 - -1.6 1,362,583 - -2.2 1,362,654 + ABZR87_RS22300 0.31 -2.7 1,362,905 - +0.1 1,362,905 - -1.0 1,362,996 + -0.7 1,362,996 + -0.2 1,362,996 + +0.6 1,362,996 + +0.1 1,362,996 + -1.8 1,362,996 + -0.6 1,362,996 + -0.6 1,362,996 + +0.3 1,362,996 + +0.8 1,362,996 + +0.8 1,362,997 - -0.1 1,362,997 - -0.2 1,362,997 - -0.2 1,363,235 + ABZR87_RS22305 0.50 -0.2 1,363,235 + ABZR87_RS22305 0.50 -0.6 1,363,235 + ABZR87_RS22305 0.50 +0.6 1,363,235 + ABZR87_RS22305 0.50 -2.0 1,363,235 + ABZR87_RS22305 0.50 -2.5 1,363,236 - ABZR87_RS22305 0.50 -2.1 1,363,236 - ABZR87_RS22305 0.50 -1.5 1,363,236 - ABZR87_RS22305 0.50 -0.7 1,363,236 - ABZR87_RS22305 0.50 +0.7 1,363,236 - ABZR87_RS22305 0.50 -1.4 1,363,407 - ABZR87_RS22305 0.87 -0.8 1,363,407 - ABZR87_RS22305 0.87 -0.8
Or see this region's nucleotide sequence