Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22290

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22280 and ABZR87_RS22285 are separated by 27 nucleotidesABZR87_RS22285 and ABZR87_RS22290 are separated by 212 nucleotidesABZR87_RS22290 and ABZR87_RS22295 are separated by 428 nucleotides ABZR87_RS22280: ABZR87_RS22280 - flagellar hook assembly protein FlgD, at 1,359,367 to 1,360,023 _RS22280 ABZR87_RS22285: ABZR87_RS22285 - flagellar basal body rod protein FlgC, at 1,360,051 to 1,360,458 _RS22285 ABZR87_RS22290: ABZR87_RS22290 - flagellar basal body rod protein FlgB, at 1,360,671 to 1,361,126 _RS22290 ABZR87_RS22295: ABZR87_RS22295 - flagellar basal body P-ring formation chaperone FlgA, at 1,361,555 to 1,362,433 _RS22295 Position (kb) 1360 1361 1362Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1360.052 kb on + strandat 1360.121 kb on + strand, within ABZR87_RS22285at 1360.121 kb on + strand, within ABZR87_RS22285at 1360.122 kb on - strand, within ABZR87_RS22285at 1360.188 kb on - strand, within ABZR87_RS22285at 1360.286 kb on + strand, within ABZR87_RS22285at 1360.287 kb on - strand, within ABZR87_RS22285at 1360.432 kb on + strandat 1360.432 kb on + strandat 1360.432 kb on + strandat 1360.432 kb on + strandat 1360.432 kb on + strandat 1360.433 kb on - strandat 1360.433 kb on - strandat 1360.433 kb on - strandat 1360.433 kb on - strandat 1360.433 kb on - strandat 1360.451 kb on - strandat 1360.451 kb on - strandat 1360.451 kb on - strandat 1360.451 kb on - strandat 1360.522 kb on - strandat 1360.616 kb on + strandat 1360.616 kb on + strandat 1360.617 kb on - strandat 1360.617 kb on - strandat 1360.660 kb on + strandat 1360.660 kb on + strandat 1360.660 kb on + strandat 1360.660 kb on + strandat 1360.660 kb on + strandat 1360.661 kb on - strandat 1360.661 kb on - strandat 1360.661 kb on - strandat 1360.661 kb on - strandat 1360.661 kb on - strandat 1360.672 kb on + strandat 1360.673 kb on - strandat 1360.673 kb on - strandat 1360.673 kb on - strandat 1360.738 kb on + strand, within ABZR87_RS22290at 1360.738 kb on + strand, within ABZR87_RS22290at 1360.826 kb on - strand, within ABZR87_RS22290at 1361.014 kb on + strand, within ABZR87_RS22290at 1361.014 kb on + strand, within ABZR87_RS22290at 1361.014 kb on + strand, within ABZR87_RS22290at 1361.014 kb on + strand, within ABZR87_RS22290at 1361.015 kb on - strand, within ABZR87_RS22290at 1361.015 kb on - strand, within ABZR87_RS22290at 1361.015 kb on - strand, within ABZR87_RS22290at 1361.015 kb on - strand, within ABZR87_RS22290at 1361.157 kb on + strandat 1361.158 kb on - strandat 1361.158 kb on - strandat 1361.208 kb on + strandat 1361.208 kb on + strandat 1361.351 kb on + strandat 1361.351 kb on + strandat 1361.352 kb on - strandat 1361.372 kb on + strandat 1361.373 kb on - strandat 1361.436 kb on + strandat 1361.436 kb on + strandat 1361.468 kb on + strandat 1361.468 kb on + strandat 1361.468 kb on + strandat 1361.469 kb on - strandat 1361.520 kb on + strandat 1361.520 kb on + strandat 1361.521 kb on - strandat 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.985 kb on + strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1361.986 kb on - strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.062 kb on + strand, within ABZR87_RS22295at 1362.063 kb on - strand, within ABZR87_RS22295at 1362.063 kb on - strand, within ABZR87_RS22295at 1362.063 kb on - strand, within ABZR87_RS22295at 1362.063 kb on - strand, within ABZR87_RS22295at 1362.063 kb on - strand, within ABZR87_RS22295at 1362.063 kb on - strand, within ABZR87_RS22295at 1362.063 kb on - strand, within ABZR87_RS22295at 1362.063 kb on - strand, within ABZR87_RS22295at 1362.063 kb on - strand, within ABZR87_RS22295at 1362.063 kb on - strand, within ABZR87_RS22295at 1362.065 kb on + strand, within ABZR87_RS22295at 1362.065 kb on + strand, within ABZR87_RS22295at 1362.065 kb on + strand, within ABZR87_RS22295at 1362.065 kb on + strand, within ABZR87_RS22295at 1362.065 kb on + strand, within ABZR87_RS22295at 1362.065 kb on + strand, within ABZR87_RS22295at 1362.065 kb on + strand, within ABZR87_RS22295at 1362.065 kb on + strand, within ABZR87_RS22295at 1362.065 kb on + strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.066 kb on - strand, within ABZR87_RS22295at 1362.107 kb on - strand, within ABZR87_RS22295

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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1,360,052 + -1.9
1,360,121 + ABZR87_RS22285 0.17 -1.3
1,360,121 + ABZR87_RS22285 0.17 -0.2
1,360,122 - ABZR87_RS22285 0.17 -0.7
1,360,188 - ABZR87_RS22285 0.34 -2.3
1,360,286 + ABZR87_RS22285 0.58 -1.6
1,360,287 - ABZR87_RS22285 0.58 -2.0
1,360,432 + -1.7
1,360,432 + -2.7
1,360,432 + -0.4
1,360,432 + -0.7
1,360,432 + -0.9
1,360,433 - -0.0
1,360,433 - -1.2
1,360,433 - -2.3
1,360,433 - -0.9
1,360,433 - -2.7
1,360,451 - -2.4
1,360,451 - -1.6
1,360,451 - -1.9
1,360,451 - -1.6
1,360,522 - +1.2
1,360,616 + +1.6
1,360,616 + -2.4
1,360,617 - -0.1
1,360,617 - +0.5
1,360,660 + -1.9
1,360,660 + -1.1
1,360,660 + -1.6
1,360,660 + -2.2
1,360,660 + -0.7
1,360,661 - +0.2
1,360,661 - +0.1
1,360,661 - +0.5
1,360,661 - -1.2
1,360,661 - -1.1
1,360,672 + -1.1
1,360,673 - +0.2
1,360,673 - -0.9
1,360,673 - -0.6
1,360,738 + ABZR87_RS22290 0.15 -0.8
1,360,738 + ABZR87_RS22290 0.15 +0.6
1,360,826 - ABZR87_RS22290 0.34 -2.1
1,361,014 + ABZR87_RS22290 0.75 -1.3
1,361,014 + ABZR87_RS22290 0.75 -1.7
1,361,014 + ABZR87_RS22290 0.75 -1.9
1,361,014 + ABZR87_RS22290 0.75 -1.0
1,361,015 - ABZR87_RS22290 0.75 -0.9
1,361,015 - ABZR87_RS22290 0.75 -1.3
1,361,015 - ABZR87_RS22290 0.75 -2.1
1,361,015 - ABZR87_RS22290 0.75 -1.9
1,361,157 + -1.8
1,361,158 - -0.2
1,361,158 - -1.0
1,361,208 + -2.2
1,361,208 + -2.1
1,361,351 + -2.0
1,361,351 + -2.2
1,361,352 - +0.1
1,361,372 + -2.4
1,361,373 - +1.5
1,361,436 + -2.7
1,361,436 + -0.5
1,361,468 + -0.8
1,361,468 + -0.8
1,361,468 + -2.3
1,361,469 - -1.7
1,361,520 + -0.5
1,361,520 + -0.4
1,361,521 - +0.6
1,361,985 + ABZR87_RS22295 0.49 -1.1
1,361,985 + ABZR87_RS22295 0.49 -1.6
1,361,985 + ABZR87_RS22295 0.49 -2.0
1,361,985 + ABZR87_RS22295 0.49 -1.5
1,361,985 + ABZR87_RS22295 0.49 -0.4
1,361,985 + ABZR87_RS22295 0.49 -3.2
1,361,985 + ABZR87_RS22295 0.49 -1.3
1,361,985 + ABZR87_RS22295 0.49 -1.5
1,361,985 + ABZR87_RS22295 0.49 -2.1
1,361,985 + ABZR87_RS22295 0.49 -1.0
1,361,985 + ABZR87_RS22295 0.49 -1.8
1,361,985 + ABZR87_RS22295 0.49 -1.6
1,361,985 + ABZR87_RS22295 0.49 -1.2
1,361,986 - ABZR87_RS22295 0.49 +0.4
1,361,986 - ABZR87_RS22295 0.49 -3.5
1,361,986 - ABZR87_RS22295 0.49 -1.8
1,361,986 - ABZR87_RS22295 0.49 -0.9
1,361,986 - ABZR87_RS22295 0.49 -3.8
1,361,986 - ABZR87_RS22295 0.49 +0.6
1,361,986 - ABZR87_RS22295 0.49 -1.3
1,361,986 - ABZR87_RS22295 0.49 -3.1
1,361,986 - ABZR87_RS22295 0.49 -2.4
1,361,986 - ABZR87_RS22295 0.49 -1.0
1,361,986 - ABZR87_RS22295 0.49 -0.7
1,361,986 - ABZR87_RS22295 0.49 -1.0
1,361,986 - ABZR87_RS22295 0.49 -1.1
1,361,986 - ABZR87_RS22295 0.49 -1.5
1,361,986 - ABZR87_RS22295 0.49 -2.8
1,361,986 - ABZR87_RS22295 0.49 -2.7
1,361,986 - ABZR87_RS22295 0.49 -0.6
1,362,062 + ABZR87_RS22295 0.58 -2.6
1,362,062 + ABZR87_RS22295 0.58 +0.0
1,362,062 + ABZR87_RS22295 0.58 -3.5
1,362,062 + ABZR87_RS22295 0.58 -0.4
1,362,062 + ABZR87_RS22295 0.58 +0.2
1,362,062 + ABZR87_RS22295 0.58 -2.1
1,362,062 + ABZR87_RS22295 0.58 -0.7
1,362,062 + ABZR87_RS22295 0.58 -0.7
1,362,062 + ABZR87_RS22295 0.58 -1.8
1,362,062 + ABZR87_RS22295 0.58 -1.0
1,362,062 + ABZR87_RS22295 0.58 -3.7
1,362,063 - ABZR87_RS22295 0.58 -0.5
1,362,063 - ABZR87_RS22295 0.58 +0.0
1,362,063 - ABZR87_RS22295 0.58 -1.4
1,362,063 - ABZR87_RS22295 0.58 -1.4
1,362,063 - ABZR87_RS22295 0.58 -2.7
1,362,063 - ABZR87_RS22295 0.58 -0.2
1,362,063 - ABZR87_RS22295 0.58 -1.5
1,362,063 - ABZR87_RS22295 0.58 +0.1
1,362,063 - ABZR87_RS22295 0.58 -1.4
1,362,063 - ABZR87_RS22295 0.58 -1.0
1,362,065 + ABZR87_RS22295 0.58 -2.3
1,362,065 + ABZR87_RS22295 0.58 -1.9
1,362,065 + ABZR87_RS22295 0.58 -1.3
1,362,065 + ABZR87_RS22295 0.58 -0.8
1,362,065 + ABZR87_RS22295 0.58 +0.0
1,362,065 + ABZR87_RS22295 0.58 -1.2
1,362,065 + ABZR87_RS22295 0.58 +0.6
1,362,065 + ABZR87_RS22295 0.58 -0.1
1,362,065 + ABZR87_RS22295 0.58 +0.3
1,362,066 - ABZR87_RS22295 0.58 -1.8
1,362,066 - ABZR87_RS22295 0.58 -1.6
1,362,066 - ABZR87_RS22295 0.58 -0.7
1,362,066 - ABZR87_RS22295 0.58 -1.6
1,362,066 - ABZR87_RS22295 0.58 -2.1
1,362,066 - ABZR87_RS22295 0.58 -2.1
1,362,066 - ABZR87_RS22295 0.58 -2.8
1,362,066 - ABZR87_RS22295 0.58 -0.7
1,362,066 - ABZR87_RS22295 0.58 -1.5
1,362,066 - ABZR87_RS22295 0.58 -0.9
1,362,066 - ABZR87_RS22295 0.58 -0.6
1,362,066 - ABZR87_RS22295 0.58 -1.5
1,362,066 - ABZR87_RS22295 0.58 -1.4
1,362,107 - ABZR87_RS22295 0.63 -0.4

Or see this region's nucleotide sequence