Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21585 and ABZR87_RS21590 are separated by 20 nucleotides ABZR87_RS21590 and ABZR87_RS21595 are separated by 74 nucleotides ABZR87_RS21595 and ABZR87_RS21600 are separated by 97 nucleotides ABZR87_RS21600 and ABZR87_RS21605 are separated by 0 nucleotides
ABZR87_RS21585: ABZR87_RS21585 - multidrug efflux SMR transporter, at 1,225,695 to 1,226,024
_RS21585
ABZR87_RS21590: ABZR87_RS21590 - NAD(P)H-dependent oxidoreductase, at 1,226,045 to 1,226,689
_RS21590
ABZR87_RS21595: ABZR87_RS21595 - Rrf2 family transcriptional regulator, at 1,226,764 to 1,227,201
_RS21595
ABZR87_RS21600: ABZR87_RS21600 - NAD(P)-dependent oxidoreductase, at 1,227,299 to 1,227,910
_RS21600
ABZR87_RS21605: ABZR87_RS21605 - hypothetical protein, at 1,227,911 to 1,228,519
_RS21605
Position (kb)
1226
1227
1228 Strain fitness (log2 ratio)
-1
0
1
2 at 1225.879 kb on - strand, within ABZR87_RS21585 at 1225.879 kb on - strand, within ABZR87_RS21585 at 1226.060 kb on + strand at 1226.060 kb on + strand at 1226.060 kb on + strand at 1226.061 kb on - strand at 1226.061 kb on - strand at 1226.130 kb on - strand, within ABZR87_RS21590 at 1226.324 kb on + strand, within ABZR87_RS21590 at 1226.324 kb on + strand, within ABZR87_RS21590 at 1226.325 kb on - strand, within ABZR87_RS21590 at 1226.325 kb on - strand, within ABZR87_RS21590 at 1226.474 kb on + strand, within ABZR87_RS21590 at 1226.509 kb on - strand, within ABZR87_RS21590 at 1226.547 kb on - strand, within ABZR87_RS21590 at 1226.547 kb on - strand, within ABZR87_RS21590 at 1226.547 kb on - strand, within ABZR87_RS21590 at 1226.734 kb on + strand at 1226.758 kb on - strand at 1226.769 kb on + strand at 1226.769 kb on + strand at 1226.770 kb on - strand at 1226.770 kb on - strand at 1226.770 kb on - strand at 1226.770 kb on - strand at 1226.799 kb on + strand at 1227.002 kb on + strand, within ABZR87_RS21595 at 1227.220 kb on + strand at 1227.257 kb on + strand at 1227.259 kb on + strand at 1227.497 kb on + strand, within ABZR87_RS21600 at 1227.497 kb on + strand, within ABZR87_RS21600 at 1227.498 kb on - strand, within ABZR87_RS21600 at 1227.498 kb on - strand, within ABZR87_RS21600 at 1227.653 kb on + strand, within ABZR87_RS21600 at 1227.654 kb on - strand, within ABZR87_RS21600 at 1227.654 kb on - strand, within ABZR87_RS21600 at 1227.654 kb on - strand, within ABZR87_RS21600 at 1227.763 kb on + strand, within ABZR87_RS21600 at 1227.990 kb on + strand, within ABZR87_RS21605 at 1227.991 kb on - strand, within ABZR87_RS21605
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 1,225,879 - ABZR87_RS21585 0.56 -1.1 1,225,879 - ABZR87_RS21585 0.56 -0.4 1,226,060 + +2.2 1,226,060 + -0.5 1,226,060 + -0.0 1,226,061 - +0.1 1,226,061 - +0.7 1,226,130 - ABZR87_RS21590 0.13 -0.2 1,226,324 + ABZR87_RS21590 0.43 -1.1 1,226,324 + ABZR87_RS21590 0.43 +0.5 1,226,325 - ABZR87_RS21590 0.43 +0.6 1,226,325 - ABZR87_RS21590 0.43 +0.5 1,226,474 + ABZR87_RS21590 0.67 +0.2 1,226,509 - ABZR87_RS21590 0.72 +0.5 1,226,547 - ABZR87_RS21590 0.78 -0.1 1,226,547 - ABZR87_RS21590 0.78 +1.2 1,226,547 - ABZR87_RS21590 0.78 +0.0 1,226,734 + +0.6 1,226,758 - -0.4 1,226,769 + +0.2 1,226,769 + -1.0 1,226,770 - -0.4 1,226,770 - +0.8 1,226,770 - +0.5 1,226,770 - +0.8 1,226,799 + -0.6 1,227,002 + ABZR87_RS21595 0.54 -0.9 1,227,220 + -0.4 1,227,257 + -0.1 1,227,259 + +1.6 1,227,497 + ABZR87_RS21600 0.32 +0.0 1,227,497 + ABZR87_RS21600 0.32 +0.4 1,227,498 - ABZR87_RS21600 0.33 -0.9 1,227,498 - ABZR87_RS21600 0.33 +0.3 1,227,653 + ABZR87_RS21600 0.58 -0.4 1,227,654 - ABZR87_RS21600 0.58 -0.5 1,227,654 - ABZR87_RS21600 0.58 +0.2 1,227,654 - ABZR87_RS21600 0.58 -0.2 1,227,763 + ABZR87_RS21600 0.76 -1.4 1,227,990 + ABZR87_RS21605 0.13 -0.2 1,227,991 - ABZR87_RS21605 0.13 -0.8
Or see this region's nucleotide sequence