Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20125 and ABZR87_RS20130 are separated by 149 nucleotides ABZR87_RS20130 and ABZR87_RS20135 are separated by 261 nucleotides
ABZR87_RS20125: ABZR87_RS20125 - contractile injection system protein, VgrG/Pvc8 family, at 895,039 to 897,888
_RS20125
ABZR87_RS20130: ABZR87_RS20130 - hypothetical protein, at 898,038 to 898,805
_RS20130
ABZR87_RS20135: ABZR87_RS20135 - M15 family metallopeptidase, at 899,067 to 899,924
_RS20135
Position (kb) 898
899 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.383 kb on + strand, within ABZR87_RS20125 at 897.383 kb on + strand, within ABZR87_RS20125 at 897.420 kb on + strand, within ABZR87_RS20125 at 897.421 kb on - strand, within ABZR87_RS20125 at 897.473 kb on + strand, within ABZR87_RS20125 at 897.834 kb on + strand at 897.834 kb on + strand at 897.834 kb on + strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.836 kb on + strand at 897.836 kb on + strand at 897.836 kb on + strand at 897.836 kb on + strand at 897.836 kb on + strand at 897.837 kb on - strand at 897.837 kb on - strand at 897.917 kb on + strand at 897.917 kb on + strand at 897.918 kb on - strand at 897.954 kb on + strand at 897.954 kb on + strand at 897.954 kb on + strand at 897.954 kb on + strand at 897.955 kb on - strand at 897.955 kb on - strand at 898.010 kb on - strand at 898.040 kb on - strand at 898.051 kb on + strand at 898.052 kb on - strand at 898.052 kb on - strand at 898.052 kb on - strand at 898.052 kb on - strand at 898.052 kb on - strand at 898.052 kb on - strand at 898.074 kb on - strand at 898.074 kb on - strand at 898.074 kb on - strand at 898.074 kb on - strand at 898.211 kb on + strand, within ABZR87_RS20130 at 898.211 kb on + strand, within ABZR87_RS20130 at 898.212 kb on - strand, within ABZR87_RS20130 at 898.212 kb on - strand, within ABZR87_RS20130 at 898.212 kb on - strand, within ABZR87_RS20130 at 898.212 kb on - strand, within ABZR87_RS20130 at 898.376 kb on + strand, within ABZR87_RS20130 at 898.376 kb on + strand, within ABZR87_RS20130 at 898.651 kb on + strand, within ABZR87_RS20130 at 898.651 kb on + strand, within ABZR87_RS20130 at 898.724 kb on + strand, within ABZR87_RS20130 at 898.724 kb on + strand, within ABZR87_RS20130 at 898.724 kb on + strand, within ABZR87_RS20130 at 898.725 kb on - strand, within ABZR87_RS20130 at 898.725 kb on - strand, within ABZR87_RS20130 at 898.725 kb on - strand, within ABZR87_RS20130 at 898.725 kb on - strand, within ABZR87_RS20130 at 898.800 kb on - strand at 898.800 kb on - strand at 898.826 kb on - strand at 898.826 kb on - strand at 898.826 kb on - strand at 898.843 kb on + strand at 898.844 kb on - strand at 898.844 kb on - strand at 898.844 kb on - strand at 898.844 kb on - strand at 898.844 kb on - strand at 898.850 kb on + strand at 898.888 kb on + strand at 898.889 kb on - strand at 898.955 kb on + strand at 898.965 kb on + strand at 898.966 kb on - strand at 899.019 kb on + strand at 899.066 kb on + strand at 899.091 kb on + strand at 899.091 kb on + strand at 899.092 kb on - strand at 899.092 kb on - strand at 899.287 kb on + strand, within ABZR87_RS20135 at 899.577 kb on + strand, within ABZR87_RS20135 at 899.578 kb on - strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.803 kb on - strand, within ABZR87_RS20135
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 897,059 + ABZR87_RS20125 0.71 -0.9 897,059 + ABZR87_RS20125 0.71 +0.3 897,059 + ABZR87_RS20125 0.71 -0.4 897,059 + ABZR87_RS20125 0.71 +0.5 897,059 + ABZR87_RS20125 0.71 +0.4 897,059 + ABZR87_RS20125 0.71 +0.4 897,059 + ABZR87_RS20125 0.71 +0.2 897,060 - ABZR87_RS20125 0.71 +0.6 897,060 - ABZR87_RS20125 0.71 -0.4 897,060 - ABZR87_RS20125 0.71 +1.3 897,060 - ABZR87_RS20125 0.71 +0.3 897,060 - ABZR87_RS20125 0.71 -0.2 897,060 - ABZR87_RS20125 0.71 +1.2 897,060 - ABZR87_RS20125 0.71 +0.2 897,060 - ABZR87_RS20125 0.71 -1.9 897,060 - ABZR87_RS20125 0.71 +0.2 897,383 + ABZR87_RS20125 0.82 +1.0 897,383 + ABZR87_RS20125 0.82 +0.2 897,420 + ABZR87_RS20125 0.84 +0.6 897,421 - ABZR87_RS20125 0.84 -0.5 897,473 + ABZR87_RS20125 0.85 -0.0 897,834 + +0.2 897,834 + +0.3 897,834 + -0.2 897,835 - -0.7 897,835 - +0.7 897,835 - -0.1 897,835 - -0.0 897,835 - +0.6 897,835 - -0.1 897,835 - -0.1 897,836 + -0.8 897,836 + +0.2 897,836 + -0.4 897,836 + +0.5 897,836 + +0.2 897,837 - -1.2 897,837 - +0.3 897,917 + -1.1 897,917 + +0.2 897,918 - -1.1 897,954 + +0.3 897,954 + +0.8 897,954 + -0.4 897,954 + -1.3 897,955 - +0.2 897,955 - +0.3 898,010 - +0.1 898,040 - +1.5 898,051 + -0.6 898,052 - +0.5 898,052 - -1.7 898,052 - -1.3 898,052 - -0.8 898,052 - +0.6 898,052 - -0.3 898,074 - +0.4 898,074 - +0.2 898,074 - +0.5 898,074 - +0.0 898,211 + ABZR87_RS20130 0.23 -0.7 898,211 + ABZR87_RS20130 0.23 +0.5 898,212 - ABZR87_RS20130 0.23 -2.2 898,212 - ABZR87_RS20130 0.23 +0.7 898,212 - ABZR87_RS20130 0.23 +0.7 898,212 - ABZR87_RS20130 0.23 -0.0 898,376 + ABZR87_RS20130 0.44 -1.3 898,376 + ABZR87_RS20130 0.44 -0.2 898,651 + ABZR87_RS20130 0.80 +0.3 898,651 + ABZR87_RS20130 0.80 +0.1 898,724 + ABZR87_RS20130 0.89 +0.3 898,724 + ABZR87_RS20130 0.89 -0.0 898,724 + ABZR87_RS20130 0.89 +1.4 898,725 - ABZR87_RS20130 0.89 -0.3 898,725 - ABZR87_RS20130 0.89 +0.8 898,725 - ABZR87_RS20130 0.89 +0.1 898,725 - ABZR87_RS20130 0.89 -2.8 898,800 - -0.3 898,800 - -0.9 898,826 - -0.5 898,826 - +0.1 898,826 - -0.1 898,843 + -2.9 898,844 - +0.7 898,844 - -0.7 898,844 - -0.2 898,844 - +0.0 898,844 - +0.7 898,850 + +0.0 898,888 + +0.4 898,889 - +0.0 898,955 + -0.1 898,965 + -0.9 898,966 - -0.5 899,019 + -1.6 899,066 + +0.1 899,091 + -0.1 899,091 + +0.1 899,092 - -0.7 899,092 - +0.9 899,287 + ABZR87_RS20135 0.26 -0.0 899,577 + ABZR87_RS20135 0.59 +0.4 899,578 - ABZR87_RS20135 0.60 -1.2 899,703 + ABZR87_RS20135 0.74 +0.1 899,703 + ABZR87_RS20135 0.74 -1.5 899,703 + ABZR87_RS20135 0.74 -0.7 899,703 + ABZR87_RS20135 0.74 -2.4 899,703 + ABZR87_RS20135 0.74 -0.2 899,703 + ABZR87_RS20135 0.74 -0.7 899,703 + ABZR87_RS20135 0.74 -0.6 899,704 - ABZR87_RS20135 0.74 -1.2 899,704 - ABZR87_RS20135 0.74 +1.6 899,704 - ABZR87_RS20135 0.74 +0.4 899,704 - ABZR87_RS20135 0.74 -0.3 899,704 - ABZR87_RS20135 0.74 +0.3 899,803 - ABZR87_RS20135 0.86 +0.0
Or see this region's nucleotide sequence