Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19765

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19755 and ABZR87_RS19760 are separated by 22 nucleotidesABZR87_RS19760 and ABZR87_RS19765 are separated by 242 nucleotidesABZR87_RS19765 and ABZR87_RS19770 are separated by 122 nucleotidesABZR87_RS19770 and ABZR87_RS19775 are separated by 156 nucleotides ABZR87_RS19755: ABZR87_RS19755 - DUF692 domain-containing protein, at 806,865 to 807,734 _RS19755 ABZR87_RS19760: ABZR87_RS19760 - DUF2282 domain-containing protein, at 807,757 to 808,023 _RS19760 ABZR87_RS19765: ABZR87_RS19765 - hypothetical protein, at 808,266 to 808,796 _RS19765 ABZR87_RS19770: ABZR87_RS19770 - H-NS family nucleoid-associated regulatory protein, at 808,919 to 809,188 _RS19770 ABZR87_RS19775: ABZR87_RS19775 - DMT family transporter, at 809,345 to 810,247 _RS19775 Position (kb) 808 809Strain fitness (log2 ratio) -2 -1 0 1at 807.301 kb on + strand, within ABZR87_RS19755at 807.394 kb on + strand, within ABZR87_RS19755at 807.395 kb on - strand, within ABZR87_RS19755at 807.617 kb on - strand, within ABZR87_RS19755at 807.617 kb on - strand, within ABZR87_RS19755at 807.617 kb on - strand, within ABZR87_RS19755at 807.617 kb on - strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.758 kb on + strandat 807.815 kb on + strand, within ABZR87_RS19760at 807.815 kb on + strand, within ABZR87_RS19760at 807.815 kb on + strand, within ABZR87_RS19760at 807.815 kb on + strand, within ABZR87_RS19760at 807.816 kb on - strand, within ABZR87_RS19760at 807.816 kb on - strand, within ABZR87_RS19760at 807.926 kb on + strand, within ABZR87_RS19760at 807.987 kb on + strand, within ABZR87_RS19760at 808.085 kb on + strandat 808.085 kb on + strandat 808.086 kb on - strandat 808.776 kb on + strandat 808.776 kb on + strandat 808.776 kb on + strandat 808.777 kb on - strandat 808.777 kb on - strandat 808.777 kb on - strandat 808.777 kb on - strandat 808.777 kb on - strandat 808.875 kb on + strandat 808.876 kb on - strandat 808.901 kb on - strandat 808.901 kb on - strandat 809.025 kb on + strand, within ABZR87_RS19770at 809.025 kb on + strand, within ABZR87_RS19770at 809.025 kb on + strand, within ABZR87_RS19770at 809.026 kb on - strand, within ABZR87_RS19770at 809.026 kb on - strand, within ABZR87_RS19770at 809.026 kb on - strand, within ABZR87_RS19770at 809.115 kb on + strand, within ABZR87_RS19770at 809.115 kb on + strand, within ABZR87_RS19770at 809.115 kb on + strand, within ABZR87_RS19770at 809.115 kb on + strand, within ABZR87_RS19770at 809.115 kb on + strand, within ABZR87_RS19770at 809.115 kb on + strand, within ABZR87_RS19770at 809.115 kb on + strand, within ABZR87_RS19770at 809.115 kb on + strand, within ABZR87_RS19770at 809.115 kb on + strand, within ABZR87_RS19770at 809.116 kb on - strand, within ABZR87_RS19770at 809.193 kb on + strandat 809.193 kb on + strandat 809.193 kb on + strandat 809.193 kb on + strandat 809.193 kb on + strandat 809.193 kb on + strandat 809.193 kb on + strandat 809.193 kb on + strandat 809.193 kb on + strandat 809.194 kb on - strandat 809.194 kb on - strandat 809.194 kb on - strandat 809.194 kb on - strandat 809.194 kb on - strandat 809.194 kb on - strandat 809.194 kb on - strandat 809.194 kb on - strandat 809.194 kb on - strandat 809.197 kb on + strandat 809.197 kb on + strandat 809.197 kb on + strandat 809.197 kb on + strandat 809.198 kb on - strandat 809.198 kb on - strandat 809.198 kb on - strandat 809.198 kb on - strandat 809.198 kb on - strandat 809.198 kb on - strandat 809.285 kb on + strandat 809.285 kb on + strandat 809.285 kb on + strandat 809.286 kb on - strandat 809.286 kb on - strandat 809.329 kb on + strandat 809.329 kb on + strandat 809.330 kb on - strandat 809.338 kb on + strandat 809.338 kb on + strandat 809.339 kb on - strandat 809.512 kb on - strand, within ABZR87_RS19775at 809.566 kb on - strand, within ABZR87_RS19775at 809.566 kb on - strand, within ABZR87_RS19775at 809.566 kb on - strand, within ABZR87_RS19775at 809.577 kb on + strand, within ABZR87_RS19775at 809.577 kb on + strand, within ABZR87_RS19775at 809.577 kb on + strand, within ABZR87_RS19775at 809.577 kb on + strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.670 kb on - strand, within ABZR87_RS19775

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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807,301 + ABZR87_RS19755 0.50 +0.8
807,394 + ABZR87_RS19755 0.61 -0.0
807,395 - ABZR87_RS19755 0.61 +0.3
807,617 - ABZR87_RS19755 0.86 -0.3
807,617 - ABZR87_RS19755 0.86 -0.3
807,617 - ABZR87_RS19755 0.86 -0.0
807,617 - ABZR87_RS19755 0.86 -0.5
807,622 + ABZR87_RS19755 0.87 -0.3
807,622 + ABZR87_RS19755 0.87 -0.3
807,622 + ABZR87_RS19755 0.87 +0.0
807,622 + ABZR87_RS19755 0.87 -0.3
807,622 + ABZR87_RS19755 0.87 -0.4
807,622 + ABZR87_RS19755 0.87 -0.2
807,623 - ABZR87_RS19755 0.87 +0.4
807,623 - ABZR87_RS19755 0.87 -0.1
807,623 - ABZR87_RS19755 0.87 -0.9
807,623 - ABZR87_RS19755 0.87 -1.7
807,623 - ABZR87_RS19755 0.87 +0.4
807,623 - ABZR87_RS19755 0.87 +0.3
807,623 - ABZR87_RS19755 0.87 +0.6
807,623 - ABZR87_RS19755 0.87 -0.4
807,758 + -0.3
807,815 + ABZR87_RS19760 0.22 -0.2
807,815 + ABZR87_RS19760 0.22 -0.2
807,815 + ABZR87_RS19760 0.22 -0.3
807,815 + ABZR87_RS19760 0.22 -1.0
807,816 - ABZR87_RS19760 0.22 +0.6
807,816 - ABZR87_RS19760 0.22 -0.9
807,926 + ABZR87_RS19760 0.63 +1.0
807,987 + ABZR87_RS19760 0.86 +0.2
808,085 + -0.0
808,085 + -0.2
808,086 - -1.2
808,776 + -1.0
808,776 + +0.0
808,776 + -0.9
808,777 - -0.3
808,777 - -0.4
808,777 - -0.6
808,777 - -0.6
808,777 - -0.5
808,875 + +0.0
808,876 - -0.6
808,901 - -0.4
808,901 - -0.1
809,025 + ABZR87_RS19770 0.39 -1.2
809,025 + ABZR87_RS19770 0.39 +0.4
809,025 + ABZR87_RS19770 0.39 -0.8
809,026 - ABZR87_RS19770 0.40 -0.4
809,026 - ABZR87_RS19770 0.40 -0.8
809,026 - ABZR87_RS19770 0.40 -0.6
809,115 + ABZR87_RS19770 0.73 -0.9
809,115 + ABZR87_RS19770 0.73 -0.1
809,115 + ABZR87_RS19770 0.73 +1.4
809,115 + ABZR87_RS19770 0.73 +0.2
809,115 + ABZR87_RS19770 0.73 +0.8
809,115 + ABZR87_RS19770 0.73 +0.5
809,115 + ABZR87_RS19770 0.73 -0.3
809,115 + ABZR87_RS19770 0.73 -0.2
809,115 + ABZR87_RS19770 0.73 -0.5
809,116 - ABZR87_RS19770 0.73 +0.0
809,193 + -0.1
809,193 + -0.5
809,193 + -0.5
809,193 + -0.0
809,193 + +1.7
809,193 + -0.7
809,193 + +0.5
809,193 + +0.2
809,193 + -0.5
809,194 - -0.7
809,194 - -0.6
809,194 - -0.8
809,194 - +0.5
809,194 - +0.5
809,194 - -0.1
809,194 - -0.4
809,194 - -0.1
809,194 - -0.5
809,197 + +0.9
809,197 + -0.2
809,197 + -0.1
809,197 + -0.4
809,198 - -0.3
809,198 - -0.3
809,198 - -0.7
809,198 - -0.4
809,198 - -0.1
809,198 - -0.5
809,285 + +0.1
809,285 + +1.5
809,285 + +0.5
809,286 - -0.6
809,286 - -0.1
809,329 + +0.4
809,329 + +0.1
809,330 - -0.1
809,338 + +0.9
809,338 + -0.2
809,339 - +0.3
809,512 - ABZR87_RS19775 0.18 -0.1
809,566 - ABZR87_RS19775 0.24 +0.9
809,566 - ABZR87_RS19775 0.24 +0.1
809,566 - ABZR87_RS19775 0.24 +1.5
809,577 + ABZR87_RS19775 0.26 -0.7
809,577 + ABZR87_RS19775 0.26 -0.9
809,577 + ABZR87_RS19775 0.26 -0.3
809,577 + ABZR87_RS19775 0.26 -1.0
809,578 - ABZR87_RS19775 0.26 -0.6
809,578 - ABZR87_RS19775 0.26 -0.4
809,578 - ABZR87_RS19775 0.26 +0.2
809,578 - ABZR87_RS19775 0.26 -2.1
809,578 - ABZR87_RS19775 0.26 +0.2
809,578 - ABZR87_RS19775 0.26 -0.4
809,578 - ABZR87_RS19775 0.26 +0.3
809,578 - ABZR87_RS19775 0.26 -0.3
809,578 - ABZR87_RS19775 0.26 +0.2
809,578 - ABZR87_RS19775 0.26 -1.0
809,670 - ABZR87_RS19775 0.36 +0.8

Or see this region's nucleotide sequence