Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19050

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19040 and ABZR87_RS19045 are separated by 122 nucleotidesABZR87_RS19045 and ABZR87_RS19050 are separated by 85 nucleotidesABZR87_RS19050 and ABZR87_RS19055 are separated by 109 nucleotides ABZR87_RS19040: ABZR87_RS19040 - ATP-binding protein, at 633,686 to 634,981 _RS19040 ABZR87_RS19045: ABZR87_RS19045 - DUF333 domain-containing protein, at 635,104 to 635,550 _RS19045 ABZR87_RS19050: ABZR87_RS19050 - glycosyltransferase family 39 protein, at 635,636 to 637,330 _RS19050 ABZR87_RS19055: ABZR87_RS19055 - LysR family transcriptional regulator, at 637,440 to 638,411 _RS19055 Position (kb) 635 636 637 638Strain fitness (log2 ratio) -2 -1 0 1 2at 634.686 kb on - strand, within ABZR87_RS19040at 634.686 kb on - strand, within ABZR87_RS19040at 634.686 kb on - strand, within ABZR87_RS19040at 635.020 kb on + strandat 635.020 kb on + strandat 635.020 kb on + strandat 635.020 kb on + strandat 635.021 kb on - strandat 635.021 kb on - strandat 635.038 kb on + strandat 635.038 kb on + strandat 635.038 kb on + strandat 635.038 kb on + strandat 635.039 kb on - strandat 635.043 kb on + strandat 635.043 kb on + strandat 635.043 kb on + strandat 635.043 kb on + strandat 635.044 kb on - strandat 635.044 kb on - strandat 635.044 kb on - strandat 635.048 kb on + strandat 635.347 kb on + strand, within ABZR87_RS19045at 635.419 kb on + strand, within ABZR87_RS19045at 635.419 kb on + strand, within ABZR87_RS19045at 635.420 kb on - strand, within ABZR87_RS19045at 635.420 kb on - strand, within ABZR87_RS19045at 635.420 kb on - strand, within ABZR87_RS19045at 635.420 kb on - strand, within ABZR87_RS19045at 635.420 kb on - strand, within ABZR87_RS19045at 635.548 kb on + strandat 635.739 kb on + strandat 635.740 kb on - strandat 635.869 kb on - strand, within ABZR87_RS19050at 635.871 kb on + strand, within ABZR87_RS19050at 635.872 kb on - strand, within ABZR87_RS19050at 635.872 kb on - strand, within ABZR87_RS19050at 635.904 kb on + strand, within ABZR87_RS19050at 635.905 kb on - strand, within ABZR87_RS19050at 635.905 kb on - strand, within ABZR87_RS19050at 636.516 kb on + strand, within ABZR87_RS19050at 636.517 kb on - strand, within ABZR87_RS19050at 636.517 kb on - strand, within ABZR87_RS19050at 636.714 kb on + strand, within ABZR87_RS19050at 636.714 kb on + strand, within ABZR87_RS19050at 636.714 kb on + strand, within ABZR87_RS19050at 636.714 kb on + strand, within ABZR87_RS19050at 636.715 kb on - strand, within ABZR87_RS19050at 636.924 kb on + strand, within ABZR87_RS19050at 636.924 kb on + strand, within ABZR87_RS19050at 636.924 kb on + strand, within ABZR87_RS19050at 636.924 kb on + strand, within ABZR87_RS19050at 636.924 kb on + strand, within ABZR87_RS19050at 636.925 kb on - strand, within ABZR87_RS19050at 636.925 kb on - strand, within ABZR87_RS19050at 636.925 kb on - strand, within ABZR87_RS19050at 636.981 kb on + strand, within ABZR87_RS19050at 637.122 kb on + strand, within ABZR87_RS19050at 637.192 kb on - strandat 637.367 kb on - strandat 637.374 kb on + strandat 637.400 kb on + strandat 637.417 kb on + strandat 637.417 kb on + strandat 637.417 kb on + strandat 637.418 kb on - strandat 637.418 kb on - strandat 637.464 kb on + strandat 637.464 kb on + strandat 637.465 kb on - strandat 637.465 kb on - strandat 637.465 kb on - strandat 637.692 kb on + strand, within ABZR87_RS19055at 637.692 kb on + strand, within ABZR87_RS19055at 637.693 kb on - strand, within ABZR87_RS19055at 637.693 kb on - strand, within ABZR87_RS19055at 637.693 kb on - strand, within ABZR87_RS19055at 637.794 kb on + strand, within ABZR87_RS19055at 637.794 kb on + strand, within ABZR87_RS19055at 637.912 kb on + strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.971 kb on + strand, within ABZR87_RS19055at 637.971 kb on + strand, within ABZR87_RS19055at 637.971 kb on + strand, within ABZR87_RS19055at 637.972 kb on - strand, within ABZR87_RS19055at 637.972 kb on - strand, within ABZR87_RS19055at 637.992 kb on + strand, within ABZR87_RS19055at 637.992 kb on + strand, within ABZR87_RS19055at 638.296 kb on + strand, within ABZR87_RS19055at 638.297 kb on - strand, within ABZR87_RS19055at 638.297 kb on - strand, within ABZR87_RS19055

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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634,686 - ABZR87_RS19040 0.77 -1.8
634,686 - ABZR87_RS19040 0.77 +0.2
634,686 - ABZR87_RS19040 0.77 +0.1
635,020 + +0.6
635,020 + +0.2
635,020 + -0.4
635,020 + +0.5
635,021 - +0.3
635,021 - +0.3
635,038 + +0.4
635,038 + +0.0
635,038 + -0.8
635,038 + +0.2
635,039 - +0.2
635,043 + +0.6
635,043 + +0.2
635,043 + -0.7
635,043 + -0.0
635,044 - -1.3
635,044 - -0.1
635,044 - +0.9
635,048 + +0.1
635,347 + ABZR87_RS19045 0.54 -0.9
635,419 + ABZR87_RS19045 0.70 +0.0
635,419 + ABZR87_RS19045 0.70 +0.6
635,420 - ABZR87_RS19045 0.71 +0.0
635,420 - ABZR87_RS19045 0.71 -1.4
635,420 - ABZR87_RS19045 0.71 +0.2
635,420 - ABZR87_RS19045 0.71 +1.8
635,420 - ABZR87_RS19045 0.71 -0.6
635,548 + +0.0
635,739 + -0.0
635,740 - -0.9
635,869 - ABZR87_RS19050 0.14 -0.3
635,871 + ABZR87_RS19050 0.14 -0.3
635,872 - ABZR87_RS19050 0.14 -1.6
635,872 - ABZR87_RS19050 0.14 +0.8
635,904 + ABZR87_RS19050 0.16 -0.0
635,905 - ABZR87_RS19050 0.16 +0.6
635,905 - ABZR87_RS19050 0.16 -0.0
636,516 + ABZR87_RS19050 0.52 -1.3
636,517 - ABZR87_RS19050 0.52 -0.0
636,517 - ABZR87_RS19050 0.52 -0.3
636,714 + ABZR87_RS19050 0.64 -1.4
636,714 + ABZR87_RS19050 0.64 +1.4
636,714 + ABZR87_RS19050 0.64 -1.4
636,714 + ABZR87_RS19050 0.64 +0.6
636,715 - ABZR87_RS19050 0.64 -1.4
636,924 + ABZR87_RS19050 0.76 -0.4
636,924 + ABZR87_RS19050 0.76 -0.7
636,924 + ABZR87_RS19050 0.76 -0.3
636,924 + ABZR87_RS19050 0.76 -0.4
636,924 + ABZR87_RS19050 0.76 +0.2
636,925 - ABZR87_RS19050 0.76 +0.6
636,925 - ABZR87_RS19050 0.76 -0.9
636,925 - ABZR87_RS19050 0.76 -0.8
636,981 + ABZR87_RS19050 0.79 -0.4
637,122 + ABZR87_RS19050 0.88 -1.4
637,192 - -1.8
637,367 - -0.5
637,374 + +1.5
637,400 + +0.3
637,417 + -0.0
637,417 + +0.1
637,417 + +0.1
637,418 - +0.6
637,418 - +0.2
637,464 + +0.2
637,464 + +0.1
637,465 - +2.0
637,465 - -0.6
637,465 - -1.5
637,692 + ABZR87_RS19055 0.26 -1.1
637,692 + ABZR87_RS19055 0.26 +1.6
637,693 - ABZR87_RS19055 0.26 +0.4
637,693 - ABZR87_RS19055 0.26 +0.0
637,693 - ABZR87_RS19055 0.26 +0.4
637,794 + ABZR87_RS19055 0.36 +0.2
637,794 + ABZR87_RS19055 0.36 -0.3
637,912 + ABZR87_RS19055 0.49 +0.1
637,913 - ABZR87_RS19055 0.49 +0.7
637,913 - ABZR87_RS19055 0.49 -0.0
637,913 - ABZR87_RS19055 0.49 -0.1
637,913 - ABZR87_RS19055 0.49 -0.2
637,913 - ABZR87_RS19055 0.49 +0.7
637,971 + ABZR87_RS19055 0.55 -0.3
637,971 + ABZR87_RS19055 0.55 +0.3
637,971 + ABZR87_RS19055 0.55 +0.2
637,972 - ABZR87_RS19055 0.55 -0.0
637,972 - ABZR87_RS19055 0.55 -0.1
637,992 + ABZR87_RS19055 0.57 -0.2
637,992 + ABZR87_RS19055 0.57 -0.9
638,296 + ABZR87_RS19055 0.88 +0.3
638,297 - ABZR87_RS19055 0.88 +0.6
638,297 - ABZR87_RS19055 0.88 +0.0

Or see this region's nucleotide sequence