Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18970

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18965 and ABZR87_RS18970 are separated by 185 nucleotidesABZR87_RS18970 and ABZR87_RS18975 are separated by 73 nucleotidesABZR87_RS18975 and ABZR87_RS18980 are separated by 291 nucleotides ABZR87_RS18965: ABZR87_RS18965 - cardiolipin synthase, at 611,391 to 612,824 _RS18965 ABZR87_RS18970: ABZR87_RS18970 - phospholipase D family protein, at 613,010 to 614,743 _RS18970 ABZR87_RS18975: ABZR87_RS18975 - entericidin A/B family lipoprotein, at 614,817 to 614,957 _RS18975 ABZR87_RS18980: ABZR87_RS18980 - methyl-accepting chemotaxis protein, at 615,249 to 616,817 _RS18980 Position (kb) 613 614 615Strain fitness (log2 ratio) -2 -1 0 1at 612.053 kb on + strand, within ABZR87_RS18965at 612.053 kb on + strand, within ABZR87_RS18965at 612.054 kb on - strand, within ABZR87_RS18965at 612.059 kb on + strand, within ABZR87_RS18965at 612.059 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.098 kb on - strand, within ABZR87_RS18965at 612.098 kb on - strand, within ABZR87_RS18965at 612.098 kb on - strand, within ABZR87_RS18965at 612.127 kb on + strand, within ABZR87_RS18965at 612.128 kb on - strand, within ABZR87_RS18965at 612.128 kb on - strand, within ABZR87_RS18965at 612.257 kb on - strand, within ABZR87_RS18965at 612.257 kb on - strand, within ABZR87_RS18965at 612.301 kb on + strand, within ABZR87_RS18965at 612.301 kb on + strand, within ABZR87_RS18965at 612.301 kb on + strand, within ABZR87_RS18965at 612.631 kb on + strand, within ABZR87_RS18965at 612.664 kb on + strand, within ABZR87_RS18965at 612.731 kb on + strandat 612.731 kb on + strandat 612.732 kb on - strandat 612.732 kb on - strandat 612.732 kb on - strandat 612.920 kb on + strandat 612.921 kb on - strandat 613.000 kb on + strandat 613.002 kb on + strandat 613.005 kb on - strandat 613.127 kb on - strandat 613.241 kb on + strand, within ABZR87_RS18970at 613.241 kb on + strand, within ABZR87_RS18970at 613.242 kb on - strand, within ABZR87_RS18970at 613.242 kb on - strand, within ABZR87_RS18970at 613.295 kb on + strand, within ABZR87_RS18970at 613.295 kb on + strand, within ABZR87_RS18970at 613.295 kb on + strand, within ABZR87_RS18970at 613.296 kb on - strand, within ABZR87_RS18970at 613.455 kb on + strand, within ABZR87_RS18970at 613.455 kb on + strand, within ABZR87_RS18970at 613.455 kb on + strand, within ABZR87_RS18970at 613.455 kb on + strand, within ABZR87_RS18970at 613.456 kb on - strand, within ABZR87_RS18970at 613.505 kb on + strand, within ABZR87_RS18970at 613.505 kb on + strand, within ABZR87_RS18970at 613.616 kb on + strand, within ABZR87_RS18970at 613.709 kb on + strand, within ABZR87_RS18970at 613.709 kb on + strand, within ABZR87_RS18970at 613.846 kb on + strand, within ABZR87_RS18970at 613.846 kb on + strand, within ABZR87_RS18970at 613.847 kb on - strand, within ABZR87_RS18970at 614.192 kb on + strand, within ABZR87_RS18970at 614.192 kb on + strand, within ABZR87_RS18970at 614.193 kb on - strand, within ABZR87_RS18970at 614.200 kb on - strand, within ABZR87_RS18970at 614.321 kb on + strand, within ABZR87_RS18970at 614.509 kb on + strand, within ABZR87_RS18970at 614.594 kb on + strandat 614.605 kb on + strandat 614.605 kb on + strandat 614.605 kb on + strandat 614.605 kb on + strandat 614.606 kb on - strandat 614.741 kb on + strandat 614.742 kb on - strandat 614.818 kb on + strandat 614.818 kb on + strandat 614.818 kb on + strandat 614.818 kb on + strandat 614.818 kb on + strandat 614.818 kb on + strandat 614.818 kb on + strandat 614.819 kb on - strandat 614.819 kb on - strandat 614.819 kb on - strandat 614.819 kb on - strandat 614.819 kb on - strandat 614.819 kb on - strandat 614.819 kb on - strandat 614.903 kb on + strand, within ABZR87_RS18975at 614.903 kb on + strand, within ABZR87_RS18975at 614.903 kb on + strand, within ABZR87_RS18975at 614.903 kb on + strand, within ABZR87_RS18975at 615.027 kb on - strandat 615.038 kb on + strandat 615.038 kb on + strandat 615.039 kb on - strandat 615.082 kb on + strandat 615.083 kb on - strandat 615.094 kb on + strandat 615.095 kb on - strandat 615.136 kb on + strandat 615.136 kb on + strandat 615.136 kb on + strandat 615.137 kb on - strandat 615.158 kb on + strandat 615.304 kb on + strandat 615.304 kb on + strandat 615.384 kb on + strandat 615.384 kb on + strandat 615.385 kb on - strandat 615.684 kb on + strand, within ABZR87_RS18980at 615.685 kb on - strand, within ABZR87_RS18980at 615.685 kb on - strand, within ABZR87_RS18980at 615.685 kb on - strand, within ABZR87_RS18980at 615.685 kb on - strand, within ABZR87_RS18980at 615.685 kb on - strand, within ABZR87_RS18980at 615.730 kb on - strand, within ABZR87_RS18980

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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612,053 + ABZR87_RS18965 0.46 -0.6
612,053 + ABZR87_RS18965 0.46 -0.4
612,054 - ABZR87_RS18965 0.46 +0.3
612,059 + ABZR87_RS18965 0.47 +0.1
612,059 + ABZR87_RS18965 0.47 -0.3
612,097 + ABZR87_RS18965 0.49 -0.2
612,097 + ABZR87_RS18965 0.49 +0.4
612,097 + ABZR87_RS18965 0.49 -0.1
612,097 + ABZR87_RS18965 0.49 -0.3
612,097 + ABZR87_RS18965 0.49 -0.4
612,097 + ABZR87_RS18965 0.49 -0.6
612,098 - ABZR87_RS18965 0.49 -0.2
612,098 - ABZR87_RS18965 0.49 -0.3
612,098 - ABZR87_RS18965 0.49 -0.5
612,127 + ABZR87_RS18965 0.51 -0.4
612,128 - ABZR87_RS18965 0.51 -0.4
612,128 - ABZR87_RS18965 0.51 +0.1
612,257 - ABZR87_RS18965 0.60 -0.8
612,257 - ABZR87_RS18965 0.60 -1.8
612,301 + ABZR87_RS18965 0.63 +0.8
612,301 + ABZR87_RS18965 0.63 -0.3
612,301 + ABZR87_RS18965 0.63 +0.2
612,631 + ABZR87_RS18965 0.86 -1.1
612,664 + ABZR87_RS18965 0.89 +0.4
612,731 + +0.2
612,731 + -0.3
612,732 - -0.4
612,732 - -0.2
612,732 - -0.4
612,920 + -0.8
612,921 - -1.0
613,000 + +0.4
613,002 + +0.1
613,005 - +0.2
613,127 - -0.1
613,241 + ABZR87_RS18970 0.13 -0.0
613,241 + ABZR87_RS18970 0.13 -1.3
613,242 - ABZR87_RS18970 0.13 +1.6
613,242 - ABZR87_RS18970 0.13 -0.7
613,295 + ABZR87_RS18970 0.16 -0.8
613,295 + ABZR87_RS18970 0.16 -0.1
613,295 + ABZR87_RS18970 0.16 -0.9
613,296 - ABZR87_RS18970 0.16 -0.9
613,455 + ABZR87_RS18970 0.26 -0.5
613,455 + ABZR87_RS18970 0.26 -1.8
613,455 + ABZR87_RS18970 0.26 -0.3
613,455 + ABZR87_RS18970 0.26 -0.3
613,456 - ABZR87_RS18970 0.26 -0.0
613,505 + ABZR87_RS18970 0.29 -0.9
613,505 + ABZR87_RS18970 0.29 +0.0
613,616 + ABZR87_RS18970 0.35 -0.4
613,709 + ABZR87_RS18970 0.40 +0.6
613,709 + ABZR87_RS18970 0.40 -0.0
613,846 + ABZR87_RS18970 0.48 +0.2
613,846 + ABZR87_RS18970 0.48 -0.8
613,847 - ABZR87_RS18970 0.48 +0.1
614,192 + ABZR87_RS18970 0.68 -0.4
614,192 + ABZR87_RS18970 0.68 +1.2
614,193 - ABZR87_RS18970 0.68 -0.1
614,200 - ABZR87_RS18970 0.69 -0.8
614,321 + ABZR87_RS18970 0.76 -0.1
614,509 + ABZR87_RS18970 0.86 +0.3
614,594 + +0.1
614,605 + +0.6
614,605 + -1.4
614,605 + -0.1
614,605 + +0.2
614,606 - -0.3
614,741 + -0.3
614,742 - -1.3
614,818 + -0.3
614,818 + +0.0
614,818 + -0.3
614,818 + -1.9
614,818 + -1.0
614,818 + -0.7
614,818 + -0.5
614,819 - +0.1
614,819 - -0.7
614,819 - +0.1
614,819 - +0.4
614,819 - -0.3
614,819 - +0.6
614,819 - -0.0
614,903 + ABZR87_RS18975 0.61 -1.1
614,903 + ABZR87_RS18975 0.61 +0.1
614,903 + ABZR87_RS18975 0.61 +0.3
614,903 + ABZR87_RS18975 0.61 -0.8
615,027 - -0.4
615,038 + +0.6
615,038 + +0.5
615,039 - +0.4
615,082 + -2.0
615,083 - -0.4
615,094 + +0.2
615,095 - -0.5
615,136 + -0.7
615,136 + -1.3
615,136 + -0.6
615,137 - -0.4
615,158 + +0.6
615,304 + +0.1
615,304 + -0.1
615,384 + -0.8
615,384 + -0.3
615,385 - +0.2
615,684 + ABZR87_RS18980 0.28 -0.0
615,685 - ABZR87_RS18980 0.28 -1.1
615,685 - ABZR87_RS18980 0.28 +0.3
615,685 - ABZR87_RS18980 0.28 -0.3
615,685 - ABZR87_RS18980 0.28 -0.6
615,685 - ABZR87_RS18980 0.28 +0.2
615,730 - ABZR87_RS18980 0.31 -0.1

Or see this region's nucleotide sequence