Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18010

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18005 and ABZR87_RS18010 overlap by 1 nucleotidesABZR87_RS18010 and ABZR87_RS18015 are separated by 321 nucleotides ABZR87_RS18005: ABZR87_RS18005 - formylglycine-generating enzyme family protein, at 393,933 to 395,036 _RS18005 ABZR87_RS18010: ABZR87_RS18010 - arylsulfatase, at 395,036 to 397,009 _RS18010 ABZR87_RS18015: ABZR87_RS18015 - flagellar biosynthesis protein FlhB, at 397,331 to 398,506 _RS18015 Position (kb) 395 396 397 398Strain fitness (log2 ratio) -2 -1 0 1 2 3at 394.168 kb on + strand, within ABZR87_RS18005at 394.169 kb on - strand, within ABZR87_RS18005at 394.169 kb on - strand, within ABZR87_RS18005at 394.191 kb on + strand, within ABZR87_RS18005at 394.191 kb on + strand, within ABZR87_RS18005at 394.191 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.234 kb on + strand, within ABZR87_RS18005at 394.235 kb on - strand, within ABZR87_RS18005at 394.235 kb on - strand, within ABZR87_RS18005at 394.307 kb on - strand, within ABZR87_RS18005at 394.307 kb on - strand, within ABZR87_RS18005at 394.307 kb on - strand, within ABZR87_RS18005at 394.432 kb on + strand, within ABZR87_RS18005at 394.432 kb on + strand, within ABZR87_RS18005at 394.432 kb on + strand, within ABZR87_RS18005at 394.552 kb on + strand, within ABZR87_RS18005at 394.552 kb on + strand, within ABZR87_RS18005at 394.553 kb on - strand, within ABZR87_RS18005at 394.553 kb on - strand, within ABZR87_RS18005at 394.630 kb on + strand, within ABZR87_RS18005at 394.722 kb on - strand, within ABZR87_RS18005at 394.754 kb on - strand, within ABZR87_RS18005at 395.023 kb on - strandat 395.040 kb on + strandat 395.040 kb on + strandat 395.040 kb on + strandat 395.041 kb on - strandat 395.041 kb on - strandat 395.041 kb on - strandat 395.041 kb on - strandat 395.041 kb on - strandat 395.066 kb on + strandat 395.067 kb on - strandat 395.088 kb on + strandat 395.088 kb on + strandat 395.088 kb on + strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.089 kb on - strandat 395.259 kb on + strand, within ABZR87_RS18010at 395.361 kb on + strand, within ABZR87_RS18010at 395.380 kb on - strand, within ABZR87_RS18010at 395.452 kb on + strand, within ABZR87_RS18010at 395.453 kb on - strand, within ABZR87_RS18010at 395.638 kb on - strand, within ABZR87_RS18010at 395.688 kb on + strand, within ABZR87_RS18010at 395.688 kb on + strand, within ABZR87_RS18010at 395.844 kb on + strand, within ABZR87_RS18010at 395.844 kb on + strand, within ABZR87_RS18010at 395.845 kb on - strand, within ABZR87_RS18010at 395.845 kb on - strand, within ABZR87_RS18010at 395.872 kb on - strand, within ABZR87_RS18010at 395.872 kb on - strand, within ABZR87_RS18010at 395.872 kb on - strand, within ABZR87_RS18010at 395.883 kb on + strand, within ABZR87_RS18010at 395.883 kb on + strand, within ABZR87_RS18010at 395.883 kb on + strand, within ABZR87_RS18010at 395.884 kb on - strand, within ABZR87_RS18010at 395.884 kb on - strand, within ABZR87_RS18010at 395.952 kb on + strand, within ABZR87_RS18010at 395.959 kb on + strand, within ABZR87_RS18010at 395.960 kb on - strand, within ABZR87_RS18010at 395.960 kb on - strand, within ABZR87_RS18010at 395.961 kb on + strand, within ABZR87_RS18010at 395.961 kb on + strand, within ABZR87_RS18010at 395.961 kb on + strand, within ABZR87_RS18010at 395.961 kb on + strand, within ABZR87_RS18010at 395.961 kb on + strand, within ABZR87_RS18010at 395.962 kb on - strand, within ABZR87_RS18010at 395.995 kb on - strand, within ABZR87_RS18010at 396.136 kb on - strand, within ABZR87_RS18010at 396.159 kb on + strand, within ABZR87_RS18010at 396.160 kb on - strand, within ABZR87_RS18010at 396.210 kb on + strand, within ABZR87_RS18010at 396.210 kb on + strand, within ABZR87_RS18010at 396.210 kb on + strand, within ABZR87_RS18010at 396.211 kb on - strand, within ABZR87_RS18010at 396.211 kb on - strand, within ABZR87_RS18010at 396.211 kb on - strand, within ABZR87_RS18010at 396.261 kb on + strand, within ABZR87_RS18010at 396.261 kb on + strand, within ABZR87_RS18010at 396.261 kb on + strand, within ABZR87_RS18010at 396.262 kb on - strand, within ABZR87_RS18010at 396.262 kb on - strand, within ABZR87_RS18010at 396.282 kb on + strand, within ABZR87_RS18010at 396.297 kb on + strand, within ABZR87_RS18010at 396.297 kb on + strand, within ABZR87_RS18010at 396.298 kb on - strand, within ABZR87_RS18010at 396.357 kb on + strand, within ABZR87_RS18010at 396.357 kb on + strand, within ABZR87_RS18010at 396.357 kb on + strand, within ABZR87_RS18010at 396.358 kb on - strand, within ABZR87_RS18010at 396.358 kb on - strand, within ABZR87_RS18010at 396.358 kb on - strand, within ABZR87_RS18010at 396.358 kb on - strand, within ABZR87_RS18010at 396.375 kb on + strand, within ABZR87_RS18010at 396.375 kb on + strand, within ABZR87_RS18010at 396.376 kb on - strand, within ABZR87_RS18010at 396.376 kb on - strand, within ABZR87_RS18010at 396.376 kb on - strand, within ABZR87_RS18010at 396.438 kb on + strand, within ABZR87_RS18010at 396.438 kb on + strand, within ABZR87_RS18010at 396.438 kb on + strand, within ABZR87_RS18010at 396.520 kb on + strand, within ABZR87_RS18010at 396.531 kb on + strand, within ABZR87_RS18010at 396.531 kb on + strand, within ABZR87_RS18010at 396.531 kb on + strand, within ABZR87_RS18010at 396.531 kb on + strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.541 kb on - strand, within ABZR87_RS18010at 396.591 kb on + strand, within ABZR87_RS18010at 396.805 kb on - strand, within ABZR87_RS18010at 396.828 kb on + strandat 396.828 kb on + strandat 396.828 kb on + strandat 396.828 kb on + strandat 396.828 kb on + strandat 396.828 kb on + strandat 396.829 kb on - strandat 396.829 kb on - strandat 396.829 kb on - strandat 396.829 kb on - strandat 396.829 kb on - strandat 396.829 kb on - strandat 397.055 kb on + strandat 397.055 kb on + strandat 397.055 kb on + strandat 397.055 kb on + strandat 397.055 kb on + strandat 397.072 kb on + strandat 397.073 kb on - strandat 397.073 kb on - strandat 397.073 kb on - strandat 397.100 kb on + strandat 397.100 kb on + strandat 397.265 kb on + strandat 397.265 kb on + strandat 397.265 kb on + strandat 397.266 kb on - strandat 397.538 kb on + strand, within ABZR87_RS18015at 397.538 kb on + strand, within ABZR87_RS18015at 397.538 kb on + strand, within ABZR87_RS18015at 397.539 kb on - strand, within ABZR87_RS18015at 397.544 kb on + strand, within ABZR87_RS18015at 397.545 kb on - strand, within ABZR87_RS18015at 397.545 kb on - strand, within ABZR87_RS18015at 397.572 kb on - strand, within ABZR87_RS18015at 397.572 kb on - strand, within ABZR87_RS18015at 397.824 kb on - strand, within ABZR87_RS18015at 397.824 kb on - strand, within ABZR87_RS18015

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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394,168 + ABZR87_RS18005 0.21 -1.6
394,169 - ABZR87_RS18005 0.21 +0.0
394,169 - ABZR87_RS18005 0.21 -0.1
394,191 + ABZR87_RS18005 0.23 +0.3
394,191 + ABZR87_RS18005 0.23 -1.2
394,191 + ABZR87_RS18005 0.23 -0.8
394,210 + ABZR87_RS18005 0.25 +0.2
394,210 + ABZR87_RS18005 0.25 -0.8
394,210 + ABZR87_RS18005 0.25 -0.0
394,210 + ABZR87_RS18005 0.25 -0.4
394,210 + ABZR87_RS18005 0.25 +1.2
394,234 + ABZR87_RS18005 0.27 -0.0
394,235 - ABZR87_RS18005 0.27 -0.6
394,235 - ABZR87_RS18005 0.27 -0.8
394,307 - ABZR87_RS18005 0.34 -1.0
394,307 - ABZR87_RS18005 0.34 -0.5
394,307 - ABZR87_RS18005 0.34 +0.2
394,432 + ABZR87_RS18005 0.45 +0.2
394,432 + ABZR87_RS18005 0.45 -0.0
394,432 + ABZR87_RS18005 0.45 +1.0
394,552 + ABZR87_RS18005 0.56 -0.0
394,552 + ABZR87_RS18005 0.56 -0.1
394,553 - ABZR87_RS18005 0.56 +0.2
394,553 - ABZR87_RS18005 0.56 +0.3
394,630 + ABZR87_RS18005 0.63 -0.0
394,722 - ABZR87_RS18005 0.71 -0.1
394,754 - ABZR87_RS18005 0.74 -0.0
395,023 - +0.5
395,040 + -0.2
395,040 + +0.6
395,040 + +0.1
395,041 - +0.0
395,041 - +1.3
395,041 - -0.9
395,041 - -0.3
395,041 - +0.4
395,066 + -0.2
395,067 - +0.1
395,088 + -0.2
395,088 + -0.5
395,088 + +0.1
395,089 - -1.0
395,089 - -0.6
395,089 - -1.1
395,089 - -0.5
395,089 - -0.2
395,089 - -0.0
395,089 - -1.1
395,089 - -0.1
395,259 + ABZR87_RS18010 0.11 +0.1
395,361 + ABZR87_RS18010 0.16 -0.1
395,380 - ABZR87_RS18010 0.17 -0.5
395,452 + ABZR87_RS18010 0.21 +2.0
395,453 - ABZR87_RS18010 0.21 -0.3
395,638 - ABZR87_RS18010 0.30 -1.4
395,688 + ABZR87_RS18010 0.33 -0.0
395,688 + ABZR87_RS18010 0.33 +0.2
395,844 + ABZR87_RS18010 0.41 -0.1
395,844 + ABZR87_RS18010 0.41 +0.5
395,845 - ABZR87_RS18010 0.41 +0.3
395,845 - ABZR87_RS18010 0.41 -0.3
395,872 - ABZR87_RS18010 0.42 +0.8
395,872 - ABZR87_RS18010 0.42 -0.8
395,872 - ABZR87_RS18010 0.42 -0.8
395,883 + ABZR87_RS18010 0.43 -0.3
395,883 + ABZR87_RS18010 0.43 -0.6
395,883 + ABZR87_RS18010 0.43 -0.5
395,884 - ABZR87_RS18010 0.43 -0.5
395,884 - ABZR87_RS18010 0.43 -0.5
395,952 + ABZR87_RS18010 0.46 -0.4
395,959 + ABZR87_RS18010 0.47 -0.1
395,960 - ABZR87_RS18010 0.47 -1.3
395,960 - ABZR87_RS18010 0.47 +0.1
395,961 + ABZR87_RS18010 0.47 -2.5
395,961 + ABZR87_RS18010 0.47 +0.1
395,961 + ABZR87_RS18010 0.47 -0.3
395,961 + ABZR87_RS18010 0.47 +0.6
395,961 + ABZR87_RS18010 0.47 -0.2
395,962 - ABZR87_RS18010 0.47 -1.6
395,995 - ABZR87_RS18010 0.49 -0.9
396,136 - ABZR87_RS18010 0.56 +0.5
396,159 + ABZR87_RS18010 0.57 -0.2
396,160 - ABZR87_RS18010 0.57 -0.1
396,210 + ABZR87_RS18010 0.59 +0.4
396,210 + ABZR87_RS18010 0.59 -0.4
396,210 + ABZR87_RS18010 0.59 -0.6
396,211 - ABZR87_RS18010 0.60 +0.0
396,211 - ABZR87_RS18010 0.60 -0.2
396,211 - ABZR87_RS18010 0.60 +0.1
396,261 + ABZR87_RS18010 0.62 -1.6
396,261 + ABZR87_RS18010 0.62 -0.5
396,261 + ABZR87_RS18010 0.62 -0.1
396,262 - ABZR87_RS18010 0.62 +1.0
396,262 - ABZR87_RS18010 0.62 -0.1
396,282 + ABZR87_RS18010 0.63 -0.0
396,297 + ABZR87_RS18010 0.64 +1.5
396,297 + ABZR87_RS18010 0.64 +0.3
396,298 - ABZR87_RS18010 0.64 -0.3
396,357 + ABZR87_RS18010 0.67 +2.2
396,357 + ABZR87_RS18010 0.67 +1.6
396,357 + ABZR87_RS18010 0.67 +0.0
396,358 - ABZR87_RS18010 0.67 +0.2
396,358 - ABZR87_RS18010 0.67 -0.2
396,358 - ABZR87_RS18010 0.67 -0.3
396,358 - ABZR87_RS18010 0.67 +0.3
396,375 + ABZR87_RS18010 0.68 +1.2
396,375 + ABZR87_RS18010 0.68 -1.0
396,376 - ABZR87_RS18010 0.68 -0.0
396,376 - ABZR87_RS18010 0.68 +0.5
396,376 - ABZR87_RS18010 0.68 -0.5
396,438 + ABZR87_RS18010 0.71 +0.1
396,438 + ABZR87_RS18010 0.71 -0.5
396,438 + ABZR87_RS18010 0.71 -0.4
396,520 + ABZR87_RS18010 0.75 +0.8
396,531 + ABZR87_RS18010 0.76 +0.7
396,531 + ABZR87_RS18010 0.76 -0.1
396,531 + ABZR87_RS18010 0.76 +0.9
396,531 + ABZR87_RS18010 0.76 -1.0
396,532 - ABZR87_RS18010 0.76 +0.7
396,532 - ABZR87_RS18010 0.76 -0.0
396,532 - ABZR87_RS18010 0.76 -0.1
396,532 - ABZR87_RS18010 0.76 -0.6
396,532 - ABZR87_RS18010 0.76 -0.6
396,532 - ABZR87_RS18010 0.76 -0.2
396,541 - ABZR87_RS18010 0.76 -0.4
396,591 + ABZR87_RS18010 0.79 -0.4
396,805 - ABZR87_RS18010 0.90 +0.3
396,828 + -0.1
396,828 + +3.2
396,828 + -0.4
396,828 + -0.4
396,828 + -0.5
396,828 + -0.5
396,829 - +0.2
396,829 - +0.4
396,829 - -0.4
396,829 - -0.3
396,829 - +0.1
396,829 - -0.8
397,055 + -0.8
397,055 + -0.2
397,055 + -0.3
397,055 + -0.5
397,055 + -0.9
397,072 + +0.2
397,073 - -0.1
397,073 - +0.2
397,073 - -0.0
397,100 + -0.0
397,100 + +0.3
397,265 + -0.7
397,265 + +0.2
397,265 + +1.6
397,266 - -1.0
397,538 + ABZR87_RS18015 0.18 +0.6
397,538 + ABZR87_RS18015 0.18 -0.8
397,538 + ABZR87_RS18015 0.18 -0.3
397,539 - ABZR87_RS18015 0.18 -1.2
397,544 + ABZR87_RS18015 0.18 -0.7
397,545 - ABZR87_RS18015 0.18 -2.3
397,545 - ABZR87_RS18015 0.18 -1.1
397,572 - ABZR87_RS18015 0.20 -1.3
397,572 - ABZR87_RS18015 0.20 -1.0
397,824 - ABZR87_RS18015 0.42 -1.4
397,824 - ABZR87_RS18015 0.42 +0.2

Or see this region's nucleotide sequence