Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17695 and ABZR87_RS17700 are separated by 17 nucleotides ABZR87_RS17700 and ABZR87_RS17705 are separated by 135 nucleotides ABZR87_RS17705 and ABZR87_RS17710 are separated by 29 nucleotides ABZR87_RS17710 and ABZR87_RS17715 are separated by 35 nucleotides
ABZR87_RS17695: ABZR87_RS17695 - helix-turn-helix transcriptional regulator, at 334,996 to 335,634
_RS17695
ABZR87_RS17700: ABZR87_RS17700 - DUF1059 domain-containing protein, at 335,652 to 335,870
_RS17700
ABZR87_RS17705: ABZR87_RS17705 - DUF3455 domain-containing protein, at 336,006 to 336,536
_RS17705
ABZR87_RS17710: ABZR87_RS17710 - DUF488 family protein, at 336,566 to 336,964
_RS17710
ABZR87_RS17715: ABZR87_RS17715 - ABC transporter substrate-binding protein, at 337,000 to 338,028
_RS17715
Position (kb) 336
337 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.014 kb on - strand at 335.014 kb on - strand at 335.014 kb on - strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.285 kb on - strand, within ABZR87_RS17695 at 335.563 kb on + strand, within ABZR87_RS17695 at 335.632 kb on + strand at 335.632 kb on + strand at 335.857 kb on + strand at 335.858 kb on - strand at 335.940 kb on + strand at 335.942 kb on + strand at 335.973 kb on + strand at 335.974 kb on - strand at 335.974 kb on - strand at 336.072 kb on + strand, within ABZR87_RS17705 at 336.172 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.345 kb on - strand, within ABZR87_RS17705 at 336.345 kb on - strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.368 kb on - strand, within ABZR87_RS17705 at 336.368 kb on - strand, within ABZR87_RS17705 at 336.645 kb on + strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.844 kb on - strand, within ABZR87_RS17710 at 336.844 kb on - strand, within ABZR87_RS17710 at 336.956 kb on + strand at 336.956 kb on + strand at 336.957 kb on - strand at 337.002 kb on - strand at 337.002 kb on - strand at 337.002 kb on - strand at 337.002 kb on - strand at 337.097 kb on + strand at 337.097 kb on + strand at 337.097 kb on + strand at 337.098 kb on - strand at 337.199 kb on + strand, within ABZR87_RS17715 at 337.200 kb on - strand, within ABZR87_RS17715 at 337.296 kb on - strand, within ABZR87_RS17715 at 337.296 kb on - strand, within ABZR87_RS17715 at 337.296 kb on - strand, within ABZR87_RS17715 at 337.296 kb on - strand, within ABZR87_RS17715 at 337.313 kb on + strand, within ABZR87_RS17715 at 337.313 kb on + strand, within ABZR87_RS17715 at 337.314 kb on - strand, within ABZR87_RS17715 at 337.314 kb on - strand, within ABZR87_RS17715 at 337.314 kb on - strand, within ABZR87_RS17715 at 337.394 kb on + strand, within ABZR87_RS17715 at 337.395 kb on - strand, within ABZR87_RS17715
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 335,014 - -0.4 335,014 - -0.3 335,014 - +0.1 335,053 + -0.4 335,053 + +0.6 335,053 + -0.3 335,053 + -0.3 335,053 + +0.1 335,054 - -0.1 335,054 - -0.7 335,054 - -0.3 335,054 - +0.3 335,054 - -1.0 335,285 - ABZR87_RS17695 0.45 +0.6 335,563 + ABZR87_RS17695 0.89 -0.2 335,632 + -0.8 335,632 + -0.9 335,857 + -0.0 335,858 - -0.0 335,940 + -0.3 335,942 + +0.1 335,973 + +0.2 335,974 - +0.1 335,974 - -0.1 336,072 + ABZR87_RS17705 0.12 -0.5 336,172 - ABZR87_RS17705 0.31 -0.0 336,302 - ABZR87_RS17705 0.56 -1.3 336,302 - ABZR87_RS17705 0.56 -0.3 336,302 - ABZR87_RS17705 0.56 -0.3 336,345 - ABZR87_RS17705 0.64 -0.9 336,345 - ABZR87_RS17705 0.64 +0.8 336,367 + ABZR87_RS17705 0.68 +0.4 336,367 + ABZR87_RS17705 0.68 -0.0 336,367 + ABZR87_RS17705 0.68 +2.4 336,367 + ABZR87_RS17705 0.68 -0.6 336,367 + ABZR87_RS17705 0.68 -1.0 336,367 + ABZR87_RS17705 0.68 -1.6 336,367 + ABZR87_RS17705 0.68 -1.0 336,368 - ABZR87_RS17705 0.68 -1.9 336,368 - ABZR87_RS17705 0.68 -0.0 336,645 + ABZR87_RS17710 0.20 -0.6 336,646 - ABZR87_RS17710 0.20 +0.0 336,646 - ABZR87_RS17710 0.20 -0.0 336,646 - ABZR87_RS17710 0.20 -0.9 336,844 - ABZR87_RS17710 0.70 -0.0 336,844 - ABZR87_RS17710 0.70 +0.1 336,956 + +0.4 336,956 + -0.8 336,957 - -1.1 337,002 - +0.3 337,002 - +1.3 337,002 - +1.6 337,002 - -0.7 337,097 + +0.5 337,097 + +0.2 337,097 + +1.2 337,098 - +0.2 337,199 + ABZR87_RS17715 0.19 +1.1 337,200 - ABZR87_RS17715 0.19 -1.7 337,296 - ABZR87_RS17715 0.29 +1.0 337,296 - ABZR87_RS17715 0.29 -0.3 337,296 - ABZR87_RS17715 0.29 -0.4 337,296 - ABZR87_RS17715 0.29 -0.1 337,313 + ABZR87_RS17715 0.30 +0.1 337,313 + ABZR87_RS17715 0.30 -1.8 337,314 - ABZR87_RS17715 0.31 +0.3 337,314 - ABZR87_RS17715 0.31 -0.5 337,314 - ABZR87_RS17715 0.31 +0.7 337,394 + ABZR87_RS17715 0.38 +0.9 337,395 - ABZR87_RS17715 0.38 +0.6
Or see this region's nucleotide sequence