Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16835 and ABZR87_RS16840 are separated by 374 nucleotides ABZR87_RS16840 and ABZR87_RS16845 are separated by 274 nucleotides ABZR87_RS16845 and ABZR87_RS16850 are separated by 340 nucleotides
ABZR87_RS16835: ABZR87_RS16835 - toll/interleukin-1 receptor domain-containing protein, at 132,161 to 133,432
_RS16835
ABZR87_RS16840: ABZR87_RS16840 - hypothetical protein, at 133,807 to 134,085
_RS16840
ABZR87_RS16845: ABZR87_RS16845 - hypothetical protein, at 134,360 to 134,710
_RS16845
ABZR87_RS16850: ABZR87_RS16850 - HD domain-containing phosphohydrolase, at 135,051 to 136,436
_RS16850
Position (kb) 134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 133.387 kb on - strand at 133.389 kb on - strand at 133.399 kb on - strand at 133.460 kb on + strand at 133.460 kb on + strand at 133.460 kb on + strand at 133.460 kb on + strand at 133.461 kb on - strand at 133.461 kb on - strand at 133.461 kb on - strand at 133.461 kb on - strand at 133.528 kb on + strand at 133.528 kb on + strand at 133.528 kb on + strand at 133.529 kb on - strand at 133.529 kb on - strand at 133.547 kb on - strand at 133.548 kb on + strand at 133.548 kb on + strand at 133.548 kb on + strand at 133.549 kb on - strand at 133.549 kb on - strand at 133.549 kb on - strand at 133.549 kb on - strand at 133.622 kb on + strand at 133.622 kb on + strand at 133.623 kb on - strand at 133.623 kb on - strand at 133.623 kb on - strand at 133.623 kb on - strand at 133.623 kb on - strand at 133.689 kb on - strand at 133.689 kb on - strand at 133.729 kb on - strand at 133.832 kb on - strand at 133.832 kb on - strand at 133.861 kb on + strand, within ABZR87_RS16840 at 133.861 kb on + strand, within ABZR87_RS16840 at 133.861 kb on + strand, within ABZR87_RS16840 at 133.861 kb on + strand, within ABZR87_RS16840 at 133.861 kb on + strand, within ABZR87_RS16840 at 133.862 kb on - strand, within ABZR87_RS16840 at 133.862 kb on - strand, within ABZR87_RS16840 at 133.862 kb on - strand, within ABZR87_RS16840 at 133.862 kb on - strand, within ABZR87_RS16840 at 133.884 kb on + strand, within ABZR87_RS16840 at 133.884 kb on + strand, within ABZR87_RS16840 at 133.884 kb on + strand, within ABZR87_RS16840 at 133.884 kb on + strand, within ABZR87_RS16840 at 133.929 kb on + strand, within ABZR87_RS16840 at 133.929 kb on + strand, within ABZR87_RS16840 at 133.929 kb on + strand, within ABZR87_RS16840 at 133.929 kb on + strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.930 kb on - strand, within ABZR87_RS16840 at 133.939 kb on + strand, within ABZR87_RS16840 at 133.939 kb on + strand, within ABZR87_RS16840 at 133.939 kb on + strand, within ABZR87_RS16840 at 133.940 kb on - strand, within ABZR87_RS16840 at 133.940 kb on - strand, within ABZR87_RS16840 at 133.940 kb on - strand, within ABZR87_RS16840 at 133.963 kb on + strand, within ABZR87_RS16840 at 133.964 kb on - strand, within ABZR87_RS16840 at 133.978 kb on - strand, within ABZR87_RS16840 at 133.978 kb on - strand, within ABZR87_RS16840 at 133.978 kb on - strand, within ABZR87_RS16840 at 133.978 kb on - strand, within ABZR87_RS16840 at 134.083 kb on + strand at 134.087 kb on + strand at 134.088 kb on - strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.129 kb on + strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.133 kb on - strand at 134.133 kb on - strand at 134.371 kb on + strand at 134.664 kb on + strand, within ABZR87_RS16845 at 134.721 kb on + strand at 134.721 kb on + strand at 134.721 kb on + strand at 134.721 kb on + strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.727 kb on + strand at 134.727 kb on + strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.740 kb on + strand at 134.740 kb on + strand at 134.741 kb on - strand at 134.907 kb on + strand at 134.907 kb on + strand at 134.908 kb on - strand at 134.908 kb on - strand at 134.978 kb on - strand at 135.012 kb on + strand at 135.013 kb on - strand at 135.013 kb on - strand at 135.041 kb on + strand at 135.042 kb on - strand at 135.073 kb on + strand at 135.074 kb on - strand at 135.074 kb on - strand at 135.233 kb on + strand, within ABZR87_RS16850 at 135.233 kb on + strand, within ABZR87_RS16850 at 135.233 kb on + strand, within ABZR87_RS16850 at 135.233 kb on + strand, within ABZR87_RS16850 at 135.234 kb on - strand, within ABZR87_RS16850 at 135.234 kb on - strand, within ABZR87_RS16850 at 135.252 kb on - strand, within ABZR87_RS16850 at 135.329 kb on + strand, within ABZR87_RS16850 at 135.329 kb on + strand, within ABZR87_RS16850 at 135.329 kb on + strand, within ABZR87_RS16850 at 135.330 kb on - strand, within ABZR87_RS16850 at 135.368 kb on + strand, within ABZR87_RS16850 at 135.368 kb on + strand, within ABZR87_RS16850 at 135.368 kb on + strand, within ABZR87_RS16850 at 135.369 kb on - strand, within ABZR87_RS16850 at 135.369 kb on - strand, within ABZR87_RS16850 at 135.476 kb on + strand, within ABZR87_RS16850 at 135.477 kb on - strand, within ABZR87_RS16850 at 135.477 kb on - strand, within ABZR87_RS16850 at 135.568 kb on + strand, within ABZR87_RS16850 at 135.569 kb on - strand, within ABZR87_RS16850 at 135.569 kb on - strand, within ABZR87_RS16850 at 135.595 kb on - strand, within ABZR87_RS16850
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 133,387 - -0.1 133,389 - -1.6 133,399 - +0.6 133,460 + -0.5 133,460 + +0.7 133,460 + -0.6 133,460 + +0.3 133,461 - -0.0 133,461 - +0.3 133,461 - +1.6 133,461 - -0.1 133,528 + +0.1 133,528 + +0.2 133,528 + -0.6 133,529 - -0.3 133,529 - +0.6 133,547 - +0.0 133,548 + -1.6 133,548 + -1.0 133,548 + -0.1 133,549 - +1.0 133,549 - -0.4 133,549 - -1.0 133,549 - -1.9 133,622 + -0.2 133,622 + +1.2 133,623 - +1.3 133,623 - -0.4 133,623 - -0.6 133,623 - -1.3 133,623 - -0.4 133,689 - +0.1 133,689 - +0.2 133,729 - -0.1 133,832 - -0.0 133,832 - +0.5 133,861 + ABZR87_RS16840 0.19 -0.1 133,861 + ABZR87_RS16840 0.19 -0.8 133,861 + ABZR87_RS16840 0.19 -0.7 133,861 + ABZR87_RS16840 0.19 -1.4 133,861 + ABZR87_RS16840 0.19 -0.0 133,862 - ABZR87_RS16840 0.20 -1.0 133,862 - ABZR87_RS16840 0.20 -0.3 133,862 - ABZR87_RS16840 0.20 +0.3 133,862 - ABZR87_RS16840 0.20 -0.8 133,884 + ABZR87_RS16840 0.28 -0.3 133,884 + ABZR87_RS16840 0.28 +0.2 133,884 + ABZR87_RS16840 0.28 -1.3 133,884 + ABZR87_RS16840 0.28 +0.3 133,929 + ABZR87_RS16840 0.44 +0.1 133,929 + ABZR87_RS16840 0.44 -0.8 133,929 + ABZR87_RS16840 0.44 -0.1 133,929 + ABZR87_RS16840 0.44 -0.8 133,930 - ABZR87_RS16840 0.44 -1.7 133,930 - ABZR87_RS16840 0.44 -0.8 133,930 - ABZR87_RS16840 0.44 -0.5 133,930 - ABZR87_RS16840 0.44 +0.2 133,930 - ABZR87_RS16840 0.44 +2.6 133,930 - ABZR87_RS16840 0.44 -0.2 133,939 + ABZR87_RS16840 0.47 +0.0 133,939 + ABZR87_RS16840 0.47 +0.2 133,939 + ABZR87_RS16840 0.47 -0.8 133,940 - ABZR87_RS16840 0.48 -0.5 133,940 - ABZR87_RS16840 0.48 +1.2 133,940 - ABZR87_RS16840 0.48 -0.2 133,963 + ABZR87_RS16840 0.56 +0.3 133,964 - ABZR87_RS16840 0.56 -1.2 133,978 - ABZR87_RS16840 0.61 +0.6 133,978 - ABZR87_RS16840 0.61 -0.1 133,978 - ABZR87_RS16840 0.61 -0.2 133,978 - ABZR87_RS16840 0.61 -0.0 134,083 + -0.1 134,087 + -0.4 134,088 - +0.1 134,128 + +0.1 134,128 + -0.6 134,128 + -0.1 134,128 + +1.0 134,128 + +0.3 134,128 + +1.8 134,128 + -1.4 134,128 + -0.3 134,128 + -1.3 134,128 + -0.3 134,128 + +0.2 134,129 + -0.4 134,129 - +0.4 134,129 - -0.2 134,129 - +0.0 134,129 - -0.3 134,129 - +0.2 134,129 - +0.1 134,129 - -1.1 134,129 - -0.1 134,132 + -0.1 134,132 + +0.1 134,132 + -2.4 134,132 + -0.0 134,132 + -0.8 134,133 - -0.1 134,133 - -0.5 134,371 + -0.4 134,664 + ABZR87_RS16845 0.87 +0.2 134,721 + -0.1 134,721 + -0.2 134,721 + +0.0 134,721 + +0.4 134,722 - +0.1 134,722 - +0.6 134,722 - -0.1 134,722 - +0.1 134,722 - -0.1 134,722 - +0.3 134,722 - -0.6 134,722 - +0.2 134,727 + +1.6 134,727 + -0.2 134,728 - +0.2 134,728 - +0.7 134,728 - +0.7 134,728 - -0.7 134,728 - -0.6 134,740 + +0.3 134,740 + -1.0 134,741 - -0.8 134,907 + +0.1 134,907 + +0.8 134,908 - +0.2 134,908 - +0.3 134,978 - -0.2 135,012 + -0.5 135,013 - +0.1 135,013 - -1.6 135,041 + -0.9 135,042 - +1.0 135,073 + +0.4 135,074 - -0.4 135,074 - +0.5 135,233 + ABZR87_RS16850 0.13 +0.8 135,233 + ABZR87_RS16850 0.13 +1.7 135,233 + ABZR87_RS16850 0.13 -0.0 135,233 + ABZR87_RS16850 0.13 -0.5 135,234 - ABZR87_RS16850 0.13 -0.5 135,234 - ABZR87_RS16850 0.13 -2.0 135,252 - ABZR87_RS16850 0.15 +0.0 135,329 + ABZR87_RS16850 0.20 +0.2 135,329 + ABZR87_RS16850 0.20 -0.8 135,329 + ABZR87_RS16850 0.20 +0.8 135,330 - ABZR87_RS16850 0.20 -0.1 135,368 + ABZR87_RS16850 0.23 -1.3 135,368 + ABZR87_RS16850 0.23 +0.6 135,368 + ABZR87_RS16850 0.23 -0.5 135,369 - ABZR87_RS16850 0.23 -0.3 135,369 - ABZR87_RS16850 0.23 +0.3 135,476 + ABZR87_RS16850 0.31 +0.1 135,477 - ABZR87_RS16850 0.31 +0.1 135,477 - ABZR87_RS16850 0.31 +0.9 135,568 + ABZR87_RS16850 0.37 -0.0 135,569 - ABZR87_RS16850 0.37 +0.0 135,569 - ABZR87_RS16850 0.37 -0.6 135,595 - ABZR87_RS16850 0.39 +0.6
Or see this region's nucleotide sequence