Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15485

Experiment: Ra3_0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ra3_0.1
3,258,885	-				-2.5
3,258,885	-				-1.9
3,259,132	+		ABZR87_RS15480	0.15	-0.5
3,259,132	+		ABZR87_RS15480	0.15	-0.8
3,259,171	+		ABZR87_RS15480	0.20	-1.5
3,259,172	-		ABZR87_RS15480	0.20	-0.5
3,259,172	-		ABZR87_RS15480	0.20	-2.7
3,259,172	-		ABZR87_RS15480	0.20	-2.1
3,259,172	-		ABZR87_RS15480	0.20	-2.3
3,259,172	-		ABZR87_RS15480	0.20	-2.1
3,259,189	-		ABZR87_RS15480	0.22	-1.4
3,259,283	-		ABZR87_RS15480	0.34	+0.0
3,259,283	-		ABZR87_RS15480	0.34	-1.1
3,259,334	+		ABZR87_RS15480	0.41	-0.2
3,259,408	+		ABZR87_RS15480	0.50	-0.4
3,259,408	+		ABZR87_RS15480	0.50	-2.3
3,259,408	+		ABZR87_RS15480	0.50	-1.2
3,259,408	+		ABZR87_RS15480	0.50	-1.5
3,259,409	-		ABZR87_RS15480	0.50	-0.5
3,259,409	-		ABZR87_RS15480	0.50	-1.2
3,259,409	-		ABZR87_RS15480	0.50	-1.0
3,259,409	-		ABZR87_RS15480	0.50	-0.7
3,259,465	+		ABZR87_RS15480	0.57	-2.0
3,259,465	+		ABZR87_RS15480	0.57	-2.1
3,259,465	+		ABZR87_RS15480	0.57	-0.5
3,259,466	-		ABZR87_RS15480	0.58	-1.7
3,259,466	-		ABZR87_RS15480	0.58	-2.5
3,259,466	-		ABZR87_RS15480	0.58	-1.4
3,259,466	-		ABZR87_RS15480	0.58	-0.7
3,259,486	+		ABZR87_RS15480	0.60	-1.0
3,259,486	+		ABZR87_RS15480	0.60	-1.1
3,259,487	-		ABZR87_RS15480	0.60	-1.8
3,259,555	+		ABZR87_RS15480	0.69	-1.1
3,259,555	+		ABZR87_RS15480	0.69	-1.2
3,259,555	+		ABZR87_RS15480	0.69	-0.7
3,259,555	+		ABZR87_RS15480	0.69	-1.0
3,259,556	-		ABZR87_RS15480	0.69	-2.9
3,259,562	-		ABZR87_RS15480	0.70	+2.0
3,259,609	+		ABZR87_RS15480	0.76	-1.5
3,259,609	+		ABZR87_RS15480	0.76	-1.6
3,259,610	-		ABZR87_RS15480	0.76	-1.7
3,259,610	-		ABZR87_RS15480	0.76	-2.0
3,259,610	-		ABZR87_RS15480	0.76	-0.0
3,259,610	-		ABZR87_RS15480	0.76	-1.5
3,259,741	+				-2.8
3,259,741	+				+0.6
3,259,742	-				+0.0
3,259,742	-				-3.0
3,259,776	+				-1.8
3,259,895	+				-1.0
3,259,895	+				-1.1
3,259,895	+				-1.2
3,259,895	+				-1.9
3,259,896	-				+0.6
3,259,896	-				-2.5
3,259,936	+		ABZR87_RS15485	0.15	-1.5
3,259,936	+		ABZR87_RS15485	0.15	-1.0
3,259,937	-		ABZR87_RS15485	0.15	-3.4
3,259,937	-		ABZR87_RS15485	0.15	-1.3
3,259,991	+		ABZR87_RS15485	0.21	-3.4
3,260,207	+		ABZR87_RS15485	0.47	-1.1
3,260,379	-		ABZR87_RS15485	0.67	-1.2
3,260,604	+				-1.0
3,260,605	-				-3.7
3,260,606	+				+1.0
3,260,606	+				-0.2
3,260,606	+				-1.8
3,260,607	-				+0.1
3,260,607	-				-2.4
3,260,607	-				-1.3
3,260,607	-				-0.4
3,260,607	-				-1.7
3,260,607	-				-1.9
3,260,607	-				-1.5
3,260,614	-				-2.1
3,260,682	+				-2.5
3,260,689	-				-2.2
3,260,689	-				-2.7
3,260,689	-				-1.6
3,260,691	+				-1.6
3,260,692	-				-1.0
3,260,763	+		ABZR87_RS15490	0.16	+0.6
3,260,763	+		ABZR87_RS15490	0.16	-0.3
3,260,763	+		ABZR87_RS15490	0.16	-1.4
3,260,763	+		ABZR87_RS15490	0.16	-1.8
3,260,763	+		ABZR87_RS15490	0.16	-2.2
3,260,763	+		ABZR87_RS15490	0.16	-0.7
3,260,763	+		ABZR87_RS15490	0.16	-1.6
3,260,763	+		ABZR87_RS15490	0.16	-1.3
3,260,764	-		ABZR87_RS15490	0.16	-1.0
3,260,764	-		ABZR87_RS15490	0.16	-2.3
3,260,764	-		ABZR87_RS15490	0.16	-1.4
3,260,764	-		ABZR87_RS15490	0.16	-0.5
3,260,764	-		ABZR87_RS15490	0.16	+0.5
3,260,764	-		ABZR87_RS15490	0.16	-1.2
3,260,764	-		ABZR87_RS15490	0.16	-2.3
3,260,764	-		ABZR87_RS15490	0.16	-2.0
3,260,764	-		ABZR87_RS15490	0.16	-1.0
3,260,764	-		ABZR87_RS15490	0.16	-1.4
3,260,764	-		ABZR87_RS15490	0.16	-1.9
3,260,767	+		ABZR87_RS15490	0.16	-3.3
3,260,767	+		ABZR87_RS15490	0.16	+0.0
3,260,767	+		ABZR87_RS15490	0.16	-2.2
3,260,767	+		ABZR87_RS15490	0.16	-0.8
3,260,832	+		ABZR87_RS15490	0.25	+0.1
3,260,832	+		ABZR87_RS15490	0.25	-2.0
3,260,832	+		ABZR87_RS15490	0.25	-2.2
3,260,833	-		ABZR87_RS15490	0.25	-1.7
3,260,859	+		ABZR87_RS15490	0.28	-0.9
3,260,904	+		ABZR87_RS15490	0.34	-0.9
3,260,905	-		ABZR87_RS15490	0.34	-1.3
3,261,082	-		ABZR87_RS15490	0.57	-1.3
3,261,329	+		ABZR87_RS15490	0.89	-2.8
3,261,330	-		ABZR87_RS15490	0.89	+0.5
3,261,472	+				-2.4
3,261,472	+				-1.5
3,261,473	-				-2.4
3,261,473	-				-1.8
3,261,473	-				-1.1
3,261,504	+				+0.6
3,261,504	+				+0.6
3,261,557	+		ABZR87_RS15495	0.10	-1.4
3,261,558	-		ABZR87_RS15495	0.10	-1.7
3,261,558	-		ABZR87_RS15495	0.10	-0.5
3,261,639	+		ABZR87_RS15495	0.16	-2.5