Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14400

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14395 and ABZR87_RS14400 are separated by 516 nucleotidesABZR87_RS14400 and ABZR87_RS14405 are separated by 48 nucleotidesABZR87_RS14405 and ABZR87_RS14410 are separated by 9 nucleotides ABZR87_RS14395: ABZR87_RS14395 - ATP-binding protein, at 3,043,935 to 3,046,256 _RS14395 ABZR87_RS14400: ABZR87_RS14400 - energy transducer TonB, at 3,046,773 to 3,047,429 _RS14400 ABZR87_RS14405: ABZR87_RS14405 - MotA/TolQ/ExbB proton channel family protein, at 3,047,478 to 3,048,206 _RS14405 ABZR87_RS14410: ABZR87_RS14410 - biopolymer transporter ExbD, at 3,048,216 to 3,048,626 _RS14410 Position (kb) 3046 3047 3048Strain fitness (log2 ratio) -2 -1 0 1at 3045.877 kb on + strand, within ABZR87_RS14395at 3045.877 kb on + strand, within ABZR87_RS14395at 3045.877 kb on + strand, within ABZR87_RS14395at 3045.878 kb on - strand, within ABZR87_RS14395at 3045.889 kb on + strand, within ABZR87_RS14395at 3045.889 kb on + strand, within ABZR87_RS14395at 3045.889 kb on + strand, within ABZR87_RS14395at 3045.889 kb on + strand, within ABZR87_RS14395at 3045.889 kb on + strand, within ABZR87_RS14395at 3045.890 kb on - strand, within ABZR87_RS14395at 3045.890 kb on - strand, within ABZR87_RS14395at 3045.892 kb on + strand, within ABZR87_RS14395at 3045.892 kb on + strand, within ABZR87_RS14395at 3045.892 kb on + strand, within ABZR87_RS14395at 3045.892 kb on + strand, within ABZR87_RS14395at 3045.892 kb on + strand, within ABZR87_RS14395at 3045.893 kb on - strand, within ABZR87_RS14395at 3045.893 kb on - strand, within ABZR87_RS14395at 3045.893 kb on - strand, within ABZR87_RS14395at 3045.893 kb on - strand, within ABZR87_RS14395at 3045.893 kb on - strand, within ABZR87_RS14395at 3045.893 kb on - strand, within ABZR87_RS14395at 3045.950 kb on + strand, within ABZR87_RS14395at 3045.950 kb on + strand, within ABZR87_RS14395at 3045.950 kb on + strand, within ABZR87_RS14395at 3045.950 kb on + strand, within ABZR87_RS14395at 3045.950 kb on + strand, within ABZR87_RS14395at 3045.950 kb on + strand, within ABZR87_RS14395at 3045.951 kb on - strand, within ABZR87_RS14395at 3045.951 kb on - strand, within ABZR87_RS14395at 3045.951 kb on - strand, within ABZR87_RS14395at 3045.951 kb on - strand, within ABZR87_RS14395at 3046.085 kb on + strandat 3046.086 kb on - strandat 3046.170 kb on + strandat 3046.324 kb on - strandat 3046.346 kb on - strandat 3046.376 kb on - strandat 3046.525 kb on - strandat 3046.578 kb on + strandat 3046.578 kb on + strandat 3046.578 kb on + strandat 3046.579 kb on - strandat 3046.579 kb on - strandat 3046.579 kb on - strandat 3046.579 kb on - strandat 3046.583 kb on + strandat 3046.583 kb on + strandat 3046.583 kb on + strandat 3046.583 kb on + strandat 3046.583 kb on + strandat 3046.583 kb on + strandat 3046.583 kb on + strandat 3046.583 kb on + strandat 3046.583 kb on + strandat 3047.427 kb on + strandat 3047.427 kb on + strandat 3047.427 kb on + strandat 3047.427 kb on + strandat 3047.427 kb on + strandat 3047.427 kb on + strandat 3047.427 kb on + strandat 3047.448 kb on + strandat 3048.204 kb on + strandat 3048.204 kb on + strandat 3048.204 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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3,045,877 + ABZR87_RS14395 0.84 +0.0
3,045,877 + ABZR87_RS14395 0.84 -0.5
3,045,877 + ABZR87_RS14395 0.84 +0.6
3,045,878 - ABZR87_RS14395 0.84 +0.3
3,045,889 + ABZR87_RS14395 0.84 +0.1
3,045,889 + ABZR87_RS14395 0.84 -0.3
3,045,889 + ABZR87_RS14395 0.84 +0.6
3,045,889 + ABZR87_RS14395 0.84 -0.3
3,045,889 + ABZR87_RS14395 0.84 -0.1
3,045,890 - ABZR87_RS14395 0.84 -0.1
3,045,890 - ABZR87_RS14395 0.84 +0.1
3,045,892 + ABZR87_RS14395 0.84 -0.9
3,045,892 + ABZR87_RS14395 0.84 +0.5
3,045,892 + ABZR87_RS14395 0.84 +0.0
3,045,892 + ABZR87_RS14395 0.84 -0.2
3,045,892 + ABZR87_RS14395 0.84 +0.4
3,045,893 - ABZR87_RS14395 0.84 +0.5
3,045,893 - ABZR87_RS14395 0.84 -0.2
3,045,893 - ABZR87_RS14395 0.84 -1.0
3,045,893 - ABZR87_RS14395 0.84 -0.3
3,045,893 - ABZR87_RS14395 0.84 -2.1
3,045,893 - ABZR87_RS14395 0.84 -0.4
3,045,950 + ABZR87_RS14395 0.87 +0.7
3,045,950 + ABZR87_RS14395 0.87 +1.1
3,045,950 + ABZR87_RS14395 0.87 +0.4
3,045,950 + ABZR87_RS14395 0.87 -0.3
3,045,950 + ABZR87_RS14395 0.87 +0.5
3,045,950 + ABZR87_RS14395 0.87 -0.2
3,045,951 - ABZR87_RS14395 0.87 +0.1
3,045,951 - ABZR87_RS14395 0.87 +0.3
3,045,951 - ABZR87_RS14395 0.87 +0.4
3,045,951 - ABZR87_RS14395 0.87 +0.1
3,046,085 + -1.0
3,046,086 - -0.5
3,046,170 + +0.9
3,046,324 - +0.1
3,046,346 - -0.4
3,046,376 - +0.1
3,046,525 - +0.0
3,046,578 + -0.7
3,046,578 + -0.2
3,046,578 + +0.4
3,046,579 - -1.1
3,046,579 - +1.3
3,046,579 - +0.1
3,046,579 - -0.4
3,046,583 + -0.7
3,046,583 + +1.1
3,046,583 + +0.1
3,046,583 + +1.2
3,046,583 + -0.3
3,046,583 + +0.5
3,046,583 + -0.0
3,046,583 + -0.5
3,046,583 + -0.3
3,047,427 + +0.4
3,047,427 + -2.5
3,047,427 + -1.3
3,047,427 + +0.3
3,047,427 + -1.0
3,047,427 + -0.7
3,047,427 + -1.0
3,047,448 + +0.2
3,048,204 + -1.4
3,048,204 + +0.0
3,048,204 + +0.3

Or see this region's nucleotide sequence