Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14395 and ABZR87_RS14400 are separated by 516 nucleotides ABZR87_RS14400 and ABZR87_RS14405 are separated by 48 nucleotides ABZR87_RS14405 and ABZR87_RS14410 are separated by 9 nucleotides
ABZR87_RS14395: ABZR87_RS14395 - ATP-binding protein, at 3,043,935 to 3,046,256
_RS14395
ABZR87_RS14400: ABZR87_RS14400 - energy transducer TonB, at 3,046,773 to 3,047,429
_RS14400
ABZR87_RS14405: ABZR87_RS14405 - MotA/TolQ/ExbB proton channel family protein, at 3,047,478 to 3,048,206
_RS14405
ABZR87_RS14410: ABZR87_RS14410 - biopolymer transporter ExbD, at 3,048,216 to 3,048,626
_RS14410
Position (kb)
3046
3047
3048 Strain fitness (log2 ratio)
-2
-1
0
1 at 3045.877 kb on + strand, within ABZR87_RS14395 at 3045.877 kb on + strand, within ABZR87_RS14395 at 3045.877 kb on + strand, within ABZR87_RS14395 at 3045.878 kb on - strand, within ABZR87_RS14395 at 3045.889 kb on + strand, within ABZR87_RS14395 at 3045.889 kb on + strand, within ABZR87_RS14395 at 3045.889 kb on + strand, within ABZR87_RS14395 at 3045.889 kb on + strand, within ABZR87_RS14395 at 3045.889 kb on + strand, within ABZR87_RS14395 at 3045.890 kb on - strand, within ABZR87_RS14395 at 3045.890 kb on - strand, within ABZR87_RS14395 at 3045.892 kb on + strand, within ABZR87_RS14395 at 3045.892 kb on + strand, within ABZR87_RS14395 at 3045.892 kb on + strand, within ABZR87_RS14395 at 3045.892 kb on + strand, within ABZR87_RS14395 at 3045.892 kb on + strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.893 kb on - strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.950 kb on + strand, within ABZR87_RS14395 at 3045.951 kb on - strand, within ABZR87_RS14395 at 3045.951 kb on - strand, within ABZR87_RS14395 at 3045.951 kb on - strand, within ABZR87_RS14395 at 3045.951 kb on - strand, within ABZR87_RS14395 at 3046.085 kb on + strand at 3046.086 kb on - strand at 3046.170 kb on + strand at 3046.324 kb on - strand at 3046.346 kb on - strand at 3046.376 kb on - strand at 3046.525 kb on - strand at 3046.578 kb on + strand at 3046.578 kb on + strand at 3046.578 kb on + strand at 3046.579 kb on - strand at 3046.579 kb on - strand at 3046.579 kb on - strand at 3046.579 kb on - strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3046.583 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.427 kb on + strand at 3047.448 kb on + strand at 3048.204 kb on + strand at 3048.204 kb on + strand at 3048.204 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 3,045,877 + ABZR87_RS14395 0.84 +0.0 3,045,877 + ABZR87_RS14395 0.84 -0.5 3,045,877 + ABZR87_RS14395 0.84 +0.6 3,045,878 - ABZR87_RS14395 0.84 +0.3 3,045,889 + ABZR87_RS14395 0.84 +0.1 3,045,889 + ABZR87_RS14395 0.84 -0.3 3,045,889 + ABZR87_RS14395 0.84 +0.6 3,045,889 + ABZR87_RS14395 0.84 -0.3 3,045,889 + ABZR87_RS14395 0.84 -0.1 3,045,890 - ABZR87_RS14395 0.84 -0.1 3,045,890 - ABZR87_RS14395 0.84 +0.1 3,045,892 + ABZR87_RS14395 0.84 -0.9 3,045,892 + ABZR87_RS14395 0.84 +0.5 3,045,892 + ABZR87_RS14395 0.84 +0.0 3,045,892 + ABZR87_RS14395 0.84 -0.2 3,045,892 + ABZR87_RS14395 0.84 +0.4 3,045,893 - ABZR87_RS14395 0.84 +0.5 3,045,893 - ABZR87_RS14395 0.84 -0.2 3,045,893 - ABZR87_RS14395 0.84 -1.0 3,045,893 - ABZR87_RS14395 0.84 -0.3 3,045,893 - ABZR87_RS14395 0.84 -2.1 3,045,893 - ABZR87_RS14395 0.84 -0.4 3,045,950 + ABZR87_RS14395 0.87 +0.7 3,045,950 + ABZR87_RS14395 0.87 +1.1 3,045,950 + ABZR87_RS14395 0.87 +0.4 3,045,950 + ABZR87_RS14395 0.87 -0.3 3,045,950 + ABZR87_RS14395 0.87 +0.5 3,045,950 + ABZR87_RS14395 0.87 -0.2 3,045,951 - ABZR87_RS14395 0.87 +0.1 3,045,951 - ABZR87_RS14395 0.87 +0.3 3,045,951 - ABZR87_RS14395 0.87 +0.4 3,045,951 - ABZR87_RS14395 0.87 +0.1 3,046,085 + -1.0 3,046,086 - -0.5 3,046,170 + +0.9 3,046,324 - +0.1 3,046,346 - -0.4 3,046,376 - +0.1 3,046,525 - +0.0 3,046,578 + -0.7 3,046,578 + -0.2 3,046,578 + +0.4 3,046,579 - -1.1 3,046,579 - +1.3 3,046,579 - +0.1 3,046,579 - -0.4 3,046,583 + -0.7 3,046,583 + +1.1 3,046,583 + +0.1 3,046,583 + +1.2 3,046,583 + -0.3 3,046,583 + +0.5 3,046,583 + -0.0 3,046,583 + -0.5 3,046,583 + -0.3 3,047,427 + +0.4 3,047,427 + -2.5 3,047,427 + -1.3 3,047,427 + +0.3 3,047,427 + -1.0 3,047,427 + -0.7 3,047,427 + -1.0 3,047,448 + +0.2 3,048,204 + -1.4 3,048,204 + +0.0 3,048,204 + +0.3
Or see this region's nucleotide sequence