Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS13960 and ABZR87_RS13965 are separated by 55 nucleotides ABZR87_RS13965 and ABZR87_RS13970 are separated by 145 nucleotides ABZR87_RS13970 and ABZR87_RS13975 are separated by 17 nucleotides ABZR87_RS13975 and ABZR87_RS13980 are separated by 145 nucleotides
ABZR87_RS13960: ABZR87_RS13960 - type VI secretion system ImpA family N-terminal domain-containing protein, at 2,948,203 to 2,949,261
_RS13960
ABZR87_RS13965: ABZR87_RS13965 - Lrp/AsnC family transcriptional regulator, at 2,949,317 to 2,949,787
_RS13965
ABZR87_RS13970: ABZR87_RS13970 - aminotransferase class V-fold PLP-dependent enzyme, at 2,949,933 to 2,951,411
_RS13970
ABZR87_RS13975: ABZR87_RS13975 - Lrp/AsnC family transcriptional regulator, at 2,951,429 to 2,951,950
_RS13975
ABZR87_RS13980: ABZR87_RS13980 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,952,096 to 2,953,112
_RS13980
Position (kb)
2949
2950
2951
2952 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2949.042 kb on - strand, within ABZR87_RS13960 at 2949.045 kb on - strand, within ABZR87_RS13960 at 2949.057 kb on + strand, within ABZR87_RS13960 at 2949.058 kb on - strand, within ABZR87_RS13960 at 2949.087 kb on + strand, within ABZR87_RS13960 at 2949.087 kb on + strand, within ABZR87_RS13960 at 2949.087 kb on + strand, within ABZR87_RS13960 at 2949.088 kb on - strand, within ABZR87_RS13960 at 2949.088 kb on - strand, within ABZR87_RS13960 at 2949.091 kb on - strand, within ABZR87_RS13960 at 2949.284 kb on + strand at 2949.284 kb on + strand at 2949.285 kb on - strand at 2949.285 kb on - strand at 2949.360 kb on + strand at 2949.360 kb on + strand at 2949.430 kb on - strand, within ABZR87_RS13965 at 2949.430 kb on - strand, within ABZR87_RS13965 at 2949.430 kb on - strand, within ABZR87_RS13965 at 2949.441 kb on + strand, within ABZR87_RS13965 at 2949.442 kb on - strand, within ABZR87_RS13965 at 2949.442 kb on - strand, within ABZR87_RS13965 at 2949.442 kb on - strand, within ABZR87_RS13965 at 2949.442 kb on - strand, within ABZR87_RS13965 at 2949.477 kb on + strand, within ABZR87_RS13965 at 2949.478 kb on - strand, within ABZR87_RS13965 at 2949.478 kb on - strand, within ABZR87_RS13965 at 2949.501 kb on + strand, within ABZR87_RS13965 at 2949.719 kb on + strand, within ABZR87_RS13965 at 2949.719 kb on + strand, within ABZR87_RS13965 at 2949.720 kb on - strand, within ABZR87_RS13965 at 2949.765 kb on - strand at 2949.765 kb on - strand at 2949.809 kb on + strand at 2949.810 kb on - strand at 2949.957 kb on + strand at 2949.958 kb on - strand at 2949.958 kb on - strand at 2950.197 kb on + strand, within ABZR87_RS13970 at 2950.197 kb on + strand, within ABZR87_RS13970 at 2950.197 kb on + strand, within ABZR87_RS13970 at 2950.305 kb on + strand, within ABZR87_RS13970 at 2950.305 kb on + strand, within ABZR87_RS13970 at 2950.305 kb on + strand, within ABZR87_RS13970 at 2950.305 kb on + strand, within ABZR87_RS13970 at 2950.305 kb on + strand, within ABZR87_RS13970 at 2950.306 kb on - strand, within ABZR87_RS13970 at 2950.306 kb on - strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.560 kb on + strand, within ABZR87_RS13970 at 2950.561 kb on - strand, within ABZR87_RS13970 at 2950.561 kb on - strand, within ABZR87_RS13970 at 2950.561 kb on - strand, within ABZR87_RS13970 at 2950.561 kb on - strand, within ABZR87_RS13970 at 2950.561 kb on - strand, within ABZR87_RS13970 at 2950.587 kb on + strand, within ABZR87_RS13970 at 2950.587 kb on + strand, within ABZR87_RS13970 at 2950.587 kb on + strand, within ABZR87_RS13970 at 2950.587 kb on + strand, within ABZR87_RS13970 at 2950.587 kb on + strand, within ABZR87_RS13970 at 2950.588 kb on - strand, within ABZR87_RS13970 at 2950.588 kb on - strand, within ABZR87_RS13970 at 2950.588 kb on - strand, within ABZR87_RS13970 at 2951.257 kb on - strand, within ABZR87_RS13970 at 2951.508 kb on + strand, within ABZR87_RS13975 at 2951.509 kb on - strand, within ABZR87_RS13975 at 2951.509 kb on - strand, within ABZR87_RS13975 at 2951.509 kb on - strand, within ABZR87_RS13975 at 2951.538 kb on + strand, within ABZR87_RS13975 at 2951.538 kb on + strand, within ABZR87_RS13975 at 2951.538 kb on + strand, within ABZR87_RS13975 at 2951.539 kb on - strand, within ABZR87_RS13975 at 2951.539 kb on - strand, within ABZR87_RS13975 at 2952.046 kb on - strand at 2952.120 kb on + strand at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.264 kb on + strand, within ABZR87_RS13980 at 2952.265 kb on - strand, within ABZR87_RS13980 at 2952.295 kb on - strand, within ABZR87_RS13980 at 2952.295 kb on - strand, within ABZR87_RS13980 at 2952.408 kb on + strand, within ABZR87_RS13980 at 2952.409 kb on - strand, within ABZR87_RS13980
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 2,949,042 - ABZR87_RS13960 0.79 +0.1 2,949,045 - ABZR87_RS13960 0.80 -1.4 2,949,057 + ABZR87_RS13960 0.81 -0.3 2,949,058 - ABZR87_RS13960 0.81 -0.4 2,949,087 + ABZR87_RS13960 0.83 +0.6 2,949,087 + ABZR87_RS13960 0.83 -0.5 2,949,087 + ABZR87_RS13960 0.83 -0.1 2,949,088 - ABZR87_RS13960 0.84 -0.6 2,949,088 - ABZR87_RS13960 0.84 +0.4 2,949,091 - ABZR87_RS13960 0.84 -0.3 2,949,284 + +2.6 2,949,284 + -0.4 2,949,285 - -0.4 2,949,285 - -0.3 2,949,360 + +1.8 2,949,360 + +0.7 2,949,430 - ABZR87_RS13965 0.24 -1.1 2,949,430 - ABZR87_RS13965 0.24 +0.3 2,949,430 - ABZR87_RS13965 0.24 +0.0 2,949,441 + ABZR87_RS13965 0.26 +0.7 2,949,442 - ABZR87_RS13965 0.27 -0.2 2,949,442 - ABZR87_RS13965 0.27 +0.1 2,949,442 - ABZR87_RS13965 0.27 -0.7 2,949,442 - ABZR87_RS13965 0.27 +0.3 2,949,477 + ABZR87_RS13965 0.34 +0.0 2,949,478 - ABZR87_RS13965 0.34 -0.2 2,949,478 - ABZR87_RS13965 0.34 -1.8 2,949,501 + ABZR87_RS13965 0.39 +0.4 2,949,719 + ABZR87_RS13965 0.85 -1.4 2,949,719 + ABZR87_RS13965 0.85 -0.8 2,949,720 - ABZR87_RS13965 0.86 -0.4 2,949,765 - -0.8 2,949,765 - +2.6 2,949,809 + +0.1 2,949,810 - -0.4 2,949,957 + +1.6 2,949,958 - -0.5 2,949,958 - +4.0 2,950,197 + ABZR87_RS13970 0.18 +0.4 2,950,197 + ABZR87_RS13970 0.18 +0.5 2,950,197 + ABZR87_RS13970 0.18 -0.0 2,950,305 + ABZR87_RS13970 0.25 +0.7 2,950,305 + ABZR87_RS13970 0.25 +0.5 2,950,305 + ABZR87_RS13970 0.25 +0.3 2,950,305 + ABZR87_RS13970 0.25 -0.1 2,950,305 + ABZR87_RS13970 0.25 +0.6 2,950,306 - ABZR87_RS13970 0.25 +0.1 2,950,306 - ABZR87_RS13970 0.25 +1.5 2,950,560 + ABZR87_RS13970 0.42 -0.6 2,950,560 + ABZR87_RS13970 0.42 +0.2 2,950,560 + ABZR87_RS13970 0.42 -0.2 2,950,560 + ABZR87_RS13970 0.42 -0.5 2,950,560 + ABZR87_RS13970 0.42 +0.5 2,950,560 + ABZR87_RS13970 0.42 -1.4 2,950,561 - ABZR87_RS13970 0.42 -0.6 2,950,561 - ABZR87_RS13970 0.42 +0.8 2,950,561 - ABZR87_RS13970 0.42 -0.3 2,950,561 - ABZR87_RS13970 0.42 -1.3 2,950,561 - ABZR87_RS13970 0.42 +0.0 2,950,587 + ABZR87_RS13970 0.44 +0.2 2,950,587 + ABZR87_RS13970 0.44 -0.5 2,950,587 + ABZR87_RS13970 0.44 +0.2 2,950,587 + ABZR87_RS13970 0.44 -0.1 2,950,587 + ABZR87_RS13970 0.44 -0.5 2,950,588 - ABZR87_RS13970 0.44 -0.1 2,950,588 - ABZR87_RS13970 0.44 +0.3 2,950,588 - ABZR87_RS13970 0.44 -1.9 2,951,257 - ABZR87_RS13970 0.90 +0.2 2,951,508 + ABZR87_RS13975 0.15 +0.8 2,951,509 - ABZR87_RS13975 0.15 +0.3 2,951,509 - ABZR87_RS13975 0.15 -0.8 2,951,509 - ABZR87_RS13975 0.15 +0.2 2,951,538 + ABZR87_RS13975 0.21 +0.0 2,951,538 + ABZR87_RS13975 0.21 +0.5 2,951,538 + ABZR87_RS13975 0.21 -0.2 2,951,539 - ABZR87_RS13975 0.21 -0.3 2,951,539 - ABZR87_RS13975 0.21 +1.2 2,952,046 - +0.3 2,952,120 + +0.2 2,952,264 + ABZR87_RS13980 0.17 +0.2 2,952,264 + ABZR87_RS13980 0.17 +0.4 2,952,264 + ABZR87_RS13980 0.17 -0.2 2,952,264 + ABZR87_RS13980 0.17 -0.2 2,952,264 + ABZR87_RS13980 0.17 -1.6 2,952,264 + ABZR87_RS13980 0.17 -0.5 2,952,264 + ABZR87_RS13980 0.17 +0.0 2,952,265 - ABZR87_RS13980 0.17 -1.0 2,952,295 - ABZR87_RS13980 0.20 +0.5 2,952,295 - ABZR87_RS13980 0.20 -1.1 2,952,408 + ABZR87_RS13980 0.31 +0.3 2,952,409 - ABZR87_RS13980 0.31 -0.5
Or see this region's nucleotide sequence