Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS12470 and ABZR87_RS12475 are separated by 81 nucleotides ABZR87_RS12475 and ABZR87_RS12480 overlap by 4 nucleotides ABZR87_RS12480 and ABZR87_RS12485 are separated by 133 nucleotides
ABZR87_RS12470: ABZR87_RS12470 - DNA polymerase III subunit delta', at 2,641,902 to 2,642,912
_RS12470
ABZR87_RS12475: ABZR87_RS12475 - dTMP kinase, at 2,642,994 to 2,643,611
_RS12475
ABZR87_RS12480: ABZR87_RS12480 - endolytic transglycosylase MltG, at 2,643,608 to 2,644,606
_RS12480
ABZR87_RS12485: ABZR87_RS12485 - folate-binding protein YgfZ, at 2,644,740 to 2,645,780
_RS12485
Position (kb)
2643
2644
2645 Strain fitness (log2 ratio)
-2
-1
0
1 at 2643.628 kb on - strand at 2643.628 kb on - strand at 2643.703 kb on - strand at 2643.703 kb on - strand at 2643.796 kb on - strand, within ABZR87_RS12480 at 2643.805 kb on - strand, within ABZR87_RS12480 at 2643.868 kb on - strand, within ABZR87_RS12480 at 2643.868 kb on - strand, within ABZR87_RS12480 at 2644.000 kb on - strand, within ABZR87_RS12480 at 2644.012 kb on - strand, within ABZR87_RS12480 at 2644.012 kb on - strand, within ABZR87_RS12480 at 2644.012 kb on - strand, within ABZR87_RS12480 at 2644.012 kb on - strand, within ABZR87_RS12480 at 2644.012 kb on - strand, within ABZR87_RS12480 at 2644.012 kb on - strand, within ABZR87_RS12480 at 2644.120 kb on - strand, within ABZR87_RS12480 at 2644.120 kb on - strand, within ABZR87_RS12480 at 2644.705 kb on - strand at 2644.705 kb on - strand at 2644.705 kb on - strand at 2644.707 kb on - strand at 2644.707 kb on - strand at 2644.707 kb on - strand at 2644.707 kb on - strand at 2644.707 kb on - strand at 2644.707 kb on - strand at 2644.707 kb on - strand at 2644.709 kb on + strand at 2644.769 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 2,643,628 - -0.4 2,643,628 - -0.8 2,643,703 - -0.3 2,643,703 - -0.3 2,643,796 - ABZR87_RS12480 0.19 -1.6 2,643,805 - ABZR87_RS12480 0.20 -1.2 2,643,868 - ABZR87_RS12480 0.26 -1.4 2,643,868 - ABZR87_RS12480 0.26 -0.2 2,644,000 - ABZR87_RS12480 0.39 -0.2 2,644,012 - ABZR87_RS12480 0.40 -2.7 2,644,012 - ABZR87_RS12480 0.40 +0.3 2,644,012 - ABZR87_RS12480 0.40 -1.0 2,644,012 - ABZR87_RS12480 0.40 -0.4 2,644,012 - ABZR87_RS12480 0.40 +0.3 2,644,012 - ABZR87_RS12480 0.40 +1.0 2,644,120 - ABZR87_RS12480 0.51 -1.6 2,644,120 - ABZR87_RS12480 0.51 -1.1 2,644,705 - -0.3 2,644,705 - +0.2 2,644,705 - +0.0 2,644,707 - +0.1 2,644,707 - +1.0 2,644,707 - +0.1 2,644,707 - +0.6 2,644,707 - +0.3 2,644,707 - -0.0 2,644,707 - +0.5 2,644,709 + -1.3 2,644,769 + -0.2
Or see this region's nucleotide sequence